ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdk05 |
|---|---|
| Clone Library Name | barley_pub |
>ERF2_CANMA (Q9HGI7) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 712 Score = 33.5 bits (75), Expect = 0.68 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = -3 Query: 596 DQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTY------LKSASISASKCVVV 435 D+E SAEP+A +P +P +P + + KSA +SAS VV Sbjct: 204 DEEASAEPEAKKESTPVPASSSPAPAAADSTPAPVKKESTPTPSVASKSAPVSASASVVT 263 Query: 434 NPNKQPEYDDAISEETEGAVDGLSEKVS 351 E +D + EE + G + VS Sbjct: 264 ADALAKEQEDEVDEEVVKDMFGGKDHVS 291
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 32.3 bits (72), Expect = 1.5 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Frame = -3 Query: 599 SDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVVNPNKQ 420 +D E SA+ A V +KP DA + GLSP S + S S K + ++ K Sbjct: 1377 TDGERSAKKPA---VQKKKPGDASSLPDAGLSPGS-------QVDSKSTFKRLFLHKTKD 1426 Query: 419 PEYDDAISEETEGAVDG-LSEKVSKMHA*CSADDGSRHR 306 +Y +EE E AV G + + + M A G +HR Sbjct: 1427 KKYSLEGAEELENAVSGHVVLEATTMKKGLEAPSGQQHR 1465
>STAU2_MOUSE (Q8CJ67) Double-stranded RNA-binding protein Staufen homolog 2| Length = 570 Score = 32.0 bits (71), Expect = 2.0 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = -3 Query: 632 HR-TTGNNEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQ---NGLSPTSLSSRTYLKSA 465 HR T+G ++S ++M+ + +VSP A + NG SPT+ LK + Sbjct: 428 HRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTA--EAIGLKGS 485 Query: 464 SISASKCVVVNPNKQPEY 411 S S C V P+KQ EY Sbjct: 486 S-PTSPCSSVQPSKQLEY 502
>SAC3_YEAST (P46674) Leucine permease transcriptional regulator| Length = 1301 Score = 31.6 bits (70), Expect = 2.6 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = -3 Query: 614 NEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVV 435 ++ H P HG +S QK Q V G SP +++++ ASK ++ Sbjct: 624 SQSHTLSTNPLLTPQVHGDLSEQKQQQIKTVTDGG-SPFVFDQSA--QNSTVEASKAHMI 680 Query: 434 NPNKQPEYDDAISEETE 384 + YD+ +S E E Sbjct: 681 STTSNGAYDEKLSSEQE 697
>TAOK2_RAT (Q9JLS3) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)| (Thousand and one amino acid protein 2) Length = 1235 Score = 30.0 bits (66), Expect = 7.5 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Frame = -3 Query: 575 PDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISAS-------KCVVVNPNKQP 417 P+ GA +P++ ++A + TSL S + S SISAS + N++ Sbjct: 321 PNGPGAEAPEEEEEAEPYMHRAGTLTSLESSHSVPSMSISASSQSSSVNSLADASDNEEE 380 Query: 416 EYDDAISEETEGAVDGLSEKVSKMHA*CSADDGSRHRISHFRQVHRM 276 E ++ EE E S +++ M +G SH +HR+ Sbjct: 381 EEEEEEEEEEEEEEGPESREMAMM------QEGEHTVTSHSSIIHRL 421
>TAOK2_HUMAN (Q9UL54) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)| (Thousand and one amino acid protein 2) (Prostate-derived STE20-like kinase 1) (PSK-1) (Kinase from chicken homolog C) (hKFC-C) Length = 1235 Score = 30.0 bits (66), Expect = 7.5 Identities = 26/100 (26%), Positives = 42/100 (42%) Frame = -3 Query: 575 PDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVVNPNKQPEYDDAIS 396 P+ GA +P++ ++A + TSL S + S SISAS + N + D Sbjct: 321 PNGPGAEAPEEEEEAEPYMHRAGTLTSLESSHSVPSMSISASS-QSSSVNSLADASDNEE 379 Query: 395 EETEGAVDGLSEKVSKMHA*CSADDGSRHRISHFRQVHRM 276 EE E + E+ + +G SH +HR+ Sbjct: 380 EEEEEEEEEEEEEGPEAREMAMMQEGEHTVTSHSSIIHRL 419
>V70K_EPMV (P20129) 70 kDa protein| Length = 649 Score = 30.0 bits (66), Expect = 7.5 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -3 Query: 506 SPTSLSSRTYLKSASISASKCVVVNPNKQP 417 SP+SLS RT+L SA IS V+ P+ P Sbjct: 546 SPSSLSLRTFLDSAVISCDSSPVLPPSPSP 575
>BCL6_MOUSE (P41183) B-cell lymphoma 6 protein homolog| Length = 707 Score = 29.6 bits (65), Expect = 9.8 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 16/129 (12%) Frame = -1 Query: 460 LVLPSVSLSTRINSQSMTMRSLRKRKGPS--TDYPRRSPRCMPSAAP-----MTEVGTAF 302 LV S++ S R +S+S + + K S + P+ + C+ +A P M E + + Sbjct: 450 LVNRSLAGSPRSSSESHSPLYMHPPKCTSCGSQSPQHTEMCLHTAGPTFPEEMGETQSEY 509 Query: 301 LISVRYTG--------C**QSSAVLGKHCIQV-GDCLASV*SCQASLLHAGTVALHGLMY 149 S G C A L +H +Q D CQAS + G +A H ++ Sbjct: 510 SDSSCENGTFFCNECDCRFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGNLASHKTVH 569 Query: 148 FYTQDYRCN 122 + YRCN Sbjct: 570 TGEKPYRCN 578
>ARRC_RANCA (P51481) Arrestin-C (Cone arrestin)| Length = 389 Score = 29.6 bits (65), Expect = 9.8 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 5/102 (4%) Frame = +2 Query: 29 ECSTAKQDSVQMSCSVRYNHA*MICVGTNPGVTSVILSVKIHQPMQGNSSC---VQQRCL 199 E K+ V M+C+ RY M +G + + S ++H P+ G +Q++ Sbjct: 45 EYQKEKKVFVMMTCAFRYGRDDMELIGLSFRKDIYVQSCQVHPPLPGEKKALTPLQEKLK 104 Query: 200 A--GSHTR*TISNLYAVLP*DRTALLSASGVPDGNEKCGADF 319 A G ++ N+ LP ++ G D + CG DF Sbjct: 105 AKLGGNSFPFSFNMATNLP---CSVTLQPGPEDSGKACGVDF 143 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,736,500 Number of Sequences: 219361 Number of extensions: 2284214 Number of successful extensions: 6502 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 6100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6498 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7422931207 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
