ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdk03 |
|---|---|
| Clone Library Name | barley_pub |
>YQEI_BACSU (P54454) Hypothetical UPF0044 protein yqeI| Length = 96 Score = 52.8 bits (125), Expect = 9e-07 Identities = 25/66 (37%), Positives = 39/66 (59%) Frame = -2 Query: 591 QVGKGGVTPNLVTAFTDNLESNELLKLKIHGNCPGELPDVIRQLEESTGSIAVDQIGRSV 412 QVGKGGV N++ + LE+ EL+K+ + NC + DV L + + S V IG ++ Sbjct: 22 QVGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDKNDVAEALVKGSRSQLVQTIGNTI 81 Query: 411 ILYRPS 394 +LY+ S Sbjct: 82 VLYKES 87
>YHBY_SHIFL (P0AGK7) UPF0044 protein yhbY| Length = 97 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = -2 Query: 588 VGKGGVTPNLVTAFTDNLESNELLKLKIHGNCPGELPDVIRQLEESTGSIAVDQIGRSVI 409 +G G+T ++ LE +EL+K+KI ++ + TG+ V IG++++ Sbjct: 24 LGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLV 83 Query: 408 LYRPSSSK 385 LYRP+ + Sbjct: 84 LYRPTKER 91
>YHBY_ECOLI (P0AGK4) UPF0044 protein yhbY| Length = 97 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = -2 Query: 588 VGKGGVTPNLVTAFTDNLESNELLKLKIHGNCPGELPDVIRQLEESTGSIAVDQIGRSVI 409 +G G+T ++ LE +EL+K+KI ++ + TG+ V IG++++ Sbjct: 24 LGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLV 83 Query: 408 LYRPSSSK 385 LYRP+ + Sbjct: 84 LYRPTKER 91
>YHBY_ECOL6 (P0AGK5) UPF0044 protein yhbY| Length = 97 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = -2 Query: 588 VGKGGVTPNLVTAFTDNLESNELLKLKIHGNCPGELPDVIRQLEESTGSIAVDQIGRSVI 409 +G G+T ++ LE +EL+K+KI ++ + TG+ V IG++++ Sbjct: 24 LGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLV 83 Query: 408 LYRPSSSK 385 LYRP+ + Sbjct: 84 LYRPTKER 91
>YHBY_ECO57 (P0AGK6) UPF0044 protein yhbY| Length = 97 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = -2 Query: 588 VGKGGVTPNLVTAFTDNLESNELLKLKIHGNCPGELPDVIRQLEESTGSIAVDQIGRSVI 409 +G G+T ++ LE +EL+K+KI ++ + TG+ V IG++++ Sbjct: 24 LGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLV 83 Query: 408 LYRPSSSK 385 LYRP+ + Sbjct: 84 LYRPTKER 91
>Y1333_HAEIN (P71376) Hypothetical UPF0044 protein HI1333| Length = 99 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/65 (29%), Positives = 33/65 (50%) Frame = -2 Query: 588 VGKGGVTPNLVTAFTDNLESNELLKLKIHGNCPGELPDVIRQLEESTGSIAVDQIGRSVI 409 +G G+T ++ + L +EL+K+K+ G +I + T + V IG ++ Sbjct: 25 LGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILV 84 Query: 408 LYRPS 394 LYRPS Sbjct: 85 LYRPS 89
>POLG_BVDVS (Q01499) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3898 Score = 32.3 bits (72), Expect = 1.2 Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Frame = -2 Query: 576 GVTPNL--VTAFTDNLESNELLKLKIHGNCPGELPDVIRQLEESTGSIAVDQIGRSVILY 403 GVTP + V TDN +S+ + L GN PG +EE A R I+ Sbjct: 2973 GVTPVMEKVEPDTDNNQSSVKIGLD-EGNYPGPGVQTHTLVEEIHNKDA-----RPFIMV 3026 Query: 402 RPSSSKMKKREEVARNREEYARNNPR 325 S S M R + ARN Y N+PR Sbjct: 3027 LGSKSSMSNRAKTARNINLYTGNDPR 3052
>MAC1_SCHPO (Q10268) Membrane-anchored protein 1 precursor| Length = 756 Score = 32.0 bits (71), Expect = 1.6 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 12/115 (10%) Frame = -2 Query: 504 HGNCPGELPDVIRQLEESTGSIAVDQIGRSVILYRPSSSKMKKREEVARNREEYARNNPR 325 H + P +LP + E ST ++G SS+ + + + +N RN PR Sbjct: 443 HSSFPSDLPI---KGEMSTNMTGAPRVGSR----NNSSNDLHAQAGMLKNVGNGPRNAPR 495 Query: 324 FGKSENAFEEG------------PRNNSAGRRFVKSGSTFRTQQKRRPVASKGSS 196 S N +G PRNNS+G ++SG + R + SS Sbjct: 496 NNSSNNLHAQGGMPMNMRGPRGAPRNNSSGDLHIQSGMPMNGRNGPRDTSRNNSS 550
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = -2 Query: 585 GKGGVTPNLVTAFTDNLESNEL--LKLKIHGNCPGELPDVIRQLEES 451 G G + L+ + + +LE L L+ KIHG+ P DV+++L+ S Sbjct: 2064 GDGSLVDELLQSLSPHLEEGPLNELRSKIHGHDPSGSADVLKELQRS 2110
>FAR2_HELAS (P41870) FMRFamide-related peptides type HF-1 precursor (TetraFaRP)| [Contains: QFYRF-amide; FLRF-amide; FMRF-amide] Length = 346 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -2 Query: 369 EVARNREEYARNNPRFGKSENAFEEGPRNNSAGRRFVKSGSTFRTQQK 226 E+ N ++ + RFGK F G + S +RF++ G + R Q+ Sbjct: 194 EILSNEDDLEKKFMRFGKRFMRFGRGDEDESYDKRFMRFGKSLRHDQE 241
>DFA2_SYNY3 (P72723) Putative diflavin flavoprotein A 2 (EC 1.-.-.-)| Length = 578 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +2 Query: 170 FQCCYPRLYDDPLDATGLRFC*VLNVDPDFTNLLPALLFLGP 295 F+ Y +L D +D L + V + +PD + L+P LL L P Sbjct: 73 FEAVYLQLLQDLVDLRSLDYLIVNHTEPDHSGLIPDLLELAP 114
>ETS2_MOUSE (P15037) C-ets-2 protein| Length = 468 Score = 30.4 bits (67), Expect = 4.6 Identities = 23/68 (33%), Positives = 31/68 (45%) Frame = +1 Query: 79 HKLNTNVHYTTTSWSKIYMIPPNNKKNNLLFSMLLPSAV*RPLGCYRSSLLLSPKCRPRF 258 H +N+N + + M PN K+NLL SM PSA LG S L + PK R Sbjct: 189 HWINSNTLGFSMEQAPYGMQAPNYPKDNLLDSMCPPSATPAALG---SELQMLPKSRLNT 245 Query: 259 YESPACAV 282 C++ Sbjct: 246 VNVNYCSI 253
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 30.0 bits (66), Expect = 6.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 627 YAHGLGKKLKSQQVGKGGVTPNLVTAFTDNLESNEL 520 Y+H +GKK+K+ +V + P+ + A D + NE+ Sbjct: 996 YSHFIGKKIKTNEVERSTDHPDEIAAEKDKIPENEM 1031
>Y206_ENCCU (Q8SWH6) Hypothetical protein ECU02_0060| Length = 602 Score = 30.0 bits (66), Expect = 6.1 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -2 Query: 489 GELPDVIRQLEESTGSIAVDQIGRSVILYRPSSSKMKKREEV--ARNREEYARNNPRFGK 316 G ++++Q+ ++ I + + R V R +KR E ARNREE R R Sbjct: 281 GVAGELVKQVLKNDKDIDSESVNRVVCSIREREEDERKRAEAESARNREELLRMEER--- 337 Query: 315 SENAFEEGPRNNSAGRRFVKSGSTFRTQQK 226 E E+G + +R K + + K Sbjct: 338 -EKGKEKGSKGKGRKKRGKKGAGEAKEESK 366
>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21| Length = 1629 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -1 Query: 637 ARLVRARPRQEAQVAAGREGRRDAQPRHRLHGQP*VQRAPQ 515 A L+R + +Q+A AAG G++ QP H+ QP Q++ Q Sbjct: 1545 AALLRQQQQQQASAAAGSPGQQHQQP-HQAQHQPQQQQSQQ 1584 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,538,640 Number of Sequences: 219361 Number of extensions: 1655556 Number of successful extensions: 4323 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4225 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4323 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
