ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdk03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK105879.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C10, full insert sequence Length = 1012 Score = 305 bits (154), Expect = 9e-80 Identities = 244/274 (89%) Strand = Plus / Minus Query: 367 ttcttccctctttttcatcttgctggagctaggcctatatagaataactgagcggccaat 426 |||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||| Sbjct: 665 ttcttctctctttttcatcttactggtgctaggacgatatagaatgacagatcgaccaat 606 Query: 427 ttggtcgacagcaatggatccggttgactcctcaagttgtcgtatcacatcaggtagttc 486 |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 605 ttggtcaacagcaatggatccggttgactcctcaagttgtagtatcacgtcaggcagctc 546 Query: 487 tccagggcaattcccatgaatttttagcttgaggagctcgttggactcaaggttgtccgt 546 ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 545 tccagggcagttcaaatgaatttttagcttgaggagctcgttggactcgaggttgtcgtt 486 Query: 547 gaaggcggtgacgaggttgggcgtcacgccgcccttcccgacctgctgcgacttgagctt 606 |||||||| ||||| | ||||| ||||||||||| ||||||||||||||||||||| Sbjct: 485 gaaggcggcgacgacggacggcgtgacgccgcccttgccgacctgctgcgacttgagccg 426 Query: 607 cttgccgaggccgtgcgcgtacgaggcgagctcc 640 |||||||||||||||||||||||| ||||||||| Sbjct: 425 cttgccgaggccgtgcgcgtacgacgcgagctcc 392
>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence Length = 82909 Score = 161 bits (81), Expect = 3e-36 Identities = 132/149 (88%) Strand = Plus / Plus Query: 367 ttcttccctctttttcatcttgctggagctaggcctatatagaataactgagcggccaat 426 |||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||| Sbjct: 80768 ttcttctctctttttcatcttactggtgctaggacgatatagaatgacagatcgaccaat 80827 Query: 427 ttggtcgacagcaatggatccggttgactcctcaagttgtcgtatcacatcaggtagttc 486 |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 80828 ttggtcaacagcaatggatccggttgactcctcaagttgtagtatcacgtcaggcagctc 80887 Query: 487 tccagggcaattcccatgaatttttagct 515 ||||||||| ||| |||||||||||||| Sbjct: 80888 tccagggcagttcaaatgaatttttagct 80916 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Plus Query: 514 cttgaggagctcgttggactcaaggttgtccgtgaaggcggtgacgaggttgggcgtcac 573 ||||||||||||||||||||| |||||||| ||||||||| ||||| | ||||| || Sbjct: 82299 cttgaggagctcgttggactcgaggttgtcgttgaaggcggcgacgacggacggcgtgac 82358 Query: 574 gccgcccttcccgacctgctgcgacttgagcttcttgccgaggccgtgcgcgtacgaggc 633 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct: 82359 gccgcccttgccgacctgctgcgacttgagccgcttgccgaggccgtgcgcgtacgacgc 82418 Query: 634 gagctcc 640 ||||||| Sbjct: 82419 gagctcc 82425
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 161 bits (81), Expect = 3e-36 Identities = 132/149 (88%) Strand = Plus / Minus Query: 367 ttcttccctctttttcatcttgctggagctaggcctatatagaataactgagcggccaat 426 |||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||| Sbjct: 147957 ttcttctctctttttcatcttactggtgctaggacgatatagaatgacagatcgaccaat 147898 Query: 427 ttggtcgacagcaatggatccggttgactcctcaagttgtcgtatcacatcaggtagttc 486 |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 147897 ttggtcaacagcaatggatccggttgactcctcaagttgtagtatcacgtcaggcagctc 147838 Query: 487 tccagggcaattcccatgaatttttagct 515 ||||||||| ||| |||||||||||||| Sbjct: 147837 tccagggcagttcaaatgaatttttagct 147809 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 514 cttgaggagctcgttggactcaaggttgtccgtgaaggcggtgacgaggttgggcgtcac 573 ||||||||||||||||||||| |||||||| ||||||||| ||||| | ||||| || Sbjct: 146426 cttgaggagctcgttggactcgaggttgtcgttgaaggcggcgacgacggacggcgtgac 146367 Query: 574 gccgcccttcccgacctgctgcgacttgagcttcttgccgaggccgtgcgcgtacgaggc 633 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct: 146366 gccgcccttgccgacctgctgcgacttgagccgcttgccgaggccgtgcgcgtacgacgc 146307 Query: 634 gagctcc 640 ||||||| Sbjct: 146306 gagctcc 146300
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 161 bits (81), Expect = 3e-36 Identities = 132/149 (88%) Strand = Plus / Plus Query: 367 ttcttccctctttttcatcttgctggagctaggcctatatagaataactgagcggccaat 426 |||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||| Sbjct: 19228424 ttcttctctctttttcatcttactggtgctaggacgatatagaatgacagatcgaccaat 19228483 Query: 427 ttggtcgacagcaatggatccggttgactcctcaagttgtcgtatcacatcaggtagttc 486 |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 19228484 ttggtcaacagcaatggatccggttgactcctcaagttgtagtatcacgtcaggcagctc 19228543 Query: 487 tccagggcaattcccatgaatttttagct 515 ||||||||| ||| |||||||||||||| Sbjct: 19228544 tccagggcagttcaaatgaatttttagct 19228572 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Plus Query: 514 cttgaggagctcgttggactcaaggttgtccgtgaaggcggtgacgaggttgggcgtcac 573 ||||||||||||||||||||| |||||||| ||||||||| ||||| | ||||| || Sbjct: 19229955 cttgaggagctcgttggactcgaggttgtcgttgaaggcggcgacgacggacggcgtgac 19230014 Query: 574 gccgcccttcccgacctgctgcgacttgagcttcttgccgaggccgtgcgcgtacgaggc 633 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct: 19230015 gccgcccttgccgacctgctgcgacttgagccgcttgccgaggccgtgcgcgtacgacgc 19230074 Query: 634 gagctcc 640 ||||||| Sbjct: 19230075 gagctcc 19230081
>dbj|AK067203.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095N21, full insert sequence Length = 2308 Score = 161 bits (81), Expect = 3e-36 Identities = 132/149 (88%) Strand = Plus / Minus Query: 367 ttcttccctctttttcatcttgctggagctaggcctatatagaataactgagcggccaat 426 |||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||| Sbjct: 2035 ttcttctctctttttcatcttactggtgctaggacgatatagaatgacagatcgaccaat 1976 Query: 427 ttggtcgacagcaatggatccggttgactcctcaagttgtcgtatcacatcaggtagttc 486 |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 1975 ttggtcaacagcaatggatccggttgactcctcaagttgtagtatcacgtcaggcagctc 1916 Query: 487 tccagggcaattcccatgaatttttagct 515 ||||||||| ||| |||||||||||||| Sbjct: 1915 tccagggcagttcaaatgaatttttagct 1887 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 514 cttgaggagctcgttggactcaaggttgtccgtgaaggcggtgacgaggttgggcgtcac 573 ||||||||||||||||||||| |||||||| ||||||||| ||||| | ||||| || Sbjct: 504 cttgaggagctcgttggactcgaggttgtcgttgaaggcggcgacgacggacggcgtgac 445 Query: 574 gccgcccttcccgacctgctgcgacttgagcttcttgccgaggccgtgcgcgtacgaggc 633 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct: 444 gccgcccttgccgacctgctgcgacttgagccgcttgccgaggccgtgcgcgtacgacgc 385 Query: 634 gagctcc 640 ||||||| Sbjct: 384 gagctcc 378
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 161 bits (81), Expect = 3e-36 Identities = 132/149 (88%) Strand = Plus / Plus Query: 367 ttcttccctctttttcatcttgctggagctaggcctatatagaataactgagcggccaat 426 |||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||| Sbjct: 19239700 ttcttctctctttttcatcttactggtgctaggacgatatagaatgacagatcgaccaat 19239759 Query: 427 ttggtcgacagcaatggatccggttgactcctcaagttgtcgtatcacatcaggtagttc 486 |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 19239760 ttggtcaacagcaatggatccggttgactcctcaagttgtagtatcacgtcaggcagctc 19239819 Query: 487 tccagggcaattcccatgaatttttagct 515 ||||||||| ||| |||||||||||||| Sbjct: 19239820 tccagggcagttcaaatgaatttttagct 19239848 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Plus Query: 514 cttgaggagctcgttggactcaaggttgtccgtgaaggcggtgacgaggttgggcgtcac 573 ||||||||||||||||||||| |||||||| ||||||||| ||||| | ||||| || Sbjct: 19241231 cttgaggagctcgttggactcgaggttgtcgttgaaggcggcgacgacggacggcgtgac 19241290 Query: 574 gccgcccttcccgacctgctgcgacttgagcttcttgccgaggccgtgcgcgtacgaggc 633 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct: 19241291 gccgcccttgccgacctgctgcgacttgagccgcttgccgaggccgtgcgcgtacgacgc 19241350 Query: 634 gagctcc 640 ||||||| Sbjct: 19241351 gagctcc 19241357
>ref|NM_197318.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0055O03.5), mRNA Length = 486 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 514 cttgaggagctcgttggactcaaggttgtccgtgaaggcggtgacgaggttgggcgtcac 573 ||||||||||||||||||||| |||||||| ||||||||| ||||| | ||||| || Sbjct: 450 cttgaggagctcgttggactcgaggttgtcgttgaaggcggcgacgacggacggcgtgac 391 Query: 574 gccgcccttcccgacctgctgcgacttgagcttcttgccgaggccgtgcgcgtacgaggc 633 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct: 390 gccgcccttgccgacctgctgcgacttgagccgcttgccgaggccgtgcgcgtacgacgc 331 Query: 634 gagctcc 640 ||||||| Sbjct: 330 gagctcc 324
>gb|AY247216.1| Hordeum vulgare subsp. vulgare syntaxin-like protein 3 gene, partial cds Length = 553 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 598 cttgagcttcttgccgaggccg 619 |||||||||||||||||||||| Sbjct: 394 cttgagcttcttgccgaggccg 373
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 598 cttgagcttcttgccgaggccg 619 |||||||||||||||||||||| Sbjct: 22801995 cttgagcttcttgccgaggccg 22801974
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633E08 Length = 136471 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 598 cttgagcttcttgccgaggccg 619 |||||||||||||||||||||| Sbjct: 88946 cttgagcttcttgccgaggccg 88925
>dbj|AK107080.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-F10, full insert sequence Length = 1131 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 598 cttgagcttcttgccgaggccg 619 |||||||||||||||||||||| Sbjct: 519 cttgagcttcttgccgaggccg 498
>gb|AC102130.7| Mus musculus chromosome 3, clone RP23-223I2, complete sequence Length = 176409 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 ttcaaatgcattttcagattt 318 ||||||||||||||||||||| Sbjct: 48960 ttcaaatgcattttcagattt 48980
>gb|AC153494.25| Mus musculus 10 BAC RP23-345J24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231991 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 agttctccagggcaattccca 502 ||||||||||||||||||||| Sbjct: 176074 agttctccagggcaattccca 176054
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 attttcagattttccaaacct 327 ||||||||||||||||||||| Sbjct: 2295342 attttcagattttccaaacct 2295362
>gb|AY280634.1| Uncultured bacterium cosmid pbiov sequence Length = 37440 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 585 cgacctgctgcgacttgagcttcttgccg 613 |||||||| |||||||||||| ||||||| Sbjct: 8947 cgacctgcagcgacttgagctgcttgccg 8919
>emb|AL355003.10| Human DNA sequence from clone RP11-753M10 on chromosome 13, complete sequence Length = 133309 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ttcctaggaccttcttcaaat 304 ||||||||||||||||||||| Sbjct: 25725 ttcctaggaccttcttcaaat 25705
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 605 ttcttgccgaggccgtgcgcg 625 ||||||||||||||||||||| Sbjct: 1212089 ttcttgccgaggccgtgcgcg 1212069
>gb|AC112906.3| Homo sapiens 3 BAC RP11-498P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 117771 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 ctttttcatcttgctggagct 396 ||||||||||||||||||||| Sbjct: 4722 ctttttcatcttgctggagct 4742
>gb|U84215.1|NHU84215 Nectria haematococca cytoplasmic dynein heavy chain (DHC1) gene, complete cds Length = 13157 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 tgagcttcttgccgaggccgt 620 ||||||||||||||||||||| Sbjct: 5332 tgagcttcttgccgaggccgt 5352
>gb|AC104656.3| Homo sapiens BAC clone RP11-547J14 from 4, complete sequence Length = 175350 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 ttcaaatgcattttcagattt 318 ||||||||||||||||||||| Sbjct: 68559 ttcaaatgcattttcagattt 68539
>gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-338F18, complete sequence Length = 169903 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ttcctaggaccttcttcaaat 304 ||||||||||||||||||||| Sbjct: 64292 ttcctaggaccttcttcaaat 64272
>emb|AJ428930.1|XLA428930 Xenopus laevis partial beta-TrCP gene, exon 1 Length = 2008 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 cttcaaatgcattttcagatt 317 ||||||||||||||||||||| Sbjct: 1666 cttcaaatgcattttcagatt 1686
>emb|BX321888.21| Zebrafish DNA sequence from clone DKEYP-47D4 in linkage group 20, complete sequence Length = 176463 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 gaagtggtgttagtgttagcc 37 ||||||||||||||||||||| Sbjct: 121158 gaagtggtgttagtgttagcc 121178
>ref|XM_527077.1| PREDICTED: Pan troglodytes similar to interferon inducible protein 1 (LOC471699), mRNA Length = 546 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 catcaggtagttctccaggg 493 |||||||||||||||||||| Sbjct: 318 catcaggtagttctccaggg 299
>gb|AC148009.3| Mus musculus BAC clone RP23-227B20 from chromosome 19, complete sequence Length = 201209 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 295 ttcttcaaatgcattttcagattttcca 322 ||||||||||||||||| | |||||||| Sbjct: 85209 ttcttcaaatgcatttttatattttcca 85236
>gb|AC165278.4| Mus musculus chromosome 15, clone RP23-250O18, complete sequence Length = 187758 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 tgagacttggaatcatggtttactagca 80 |||||||||||| |||||||||| |||| Sbjct: 90518 tgagacttggaagcatggtttacaagca 90545
>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence Length = 257109 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 tcctccaaacaataagaaaaacaa 161 ||||||||||||||| |||||||| Sbjct: 193406 tcctccaaacaataacaaaaacaa 193429
>gb|BC064674.1| Mus musculus inhibitor of growth family, member 5, mRNA (cDNA clone MGC:66742 IMAGE:6400183), complete cds Length = 4579 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tcatcttgctggagctaggc 400 |||||||||||||||||||| Sbjct: 2861 tcatcttgctggagctaggc 2880
>emb|AJ459965.1|ECA459965 Equus caballus CRISP3 gene for cysteine-rich secretory protein 3 and TPX1 gene for testis specific protein 1 Length = 137520 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ttcaaatgcattttcagatt 317 |||||||||||||||||||| Sbjct: 37274 ttcaaatgcattttcagatt 37293
>gb|AC124540.4| Mus musculus BAC clone RP23-361G19 from chromosome 19, complete sequence Length = 199168 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 295 ttcttcaaatgcattttcagattttcca 322 ||||||||||||||||| | |||||||| Sbjct: 189668 ttcttcaaatgcatttttatattttcca 189695
>gb|AC093775.2| Homo sapiens BAC clone RP11-138B9 from 7, complete sequence Length = 104892 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aacaataagaaaaacaatct 164 |||||||||||||||||||| Sbjct: 68718 aacaataagaaaaacaatct 68737
>gb|AC147635.4| Mus musculus BAC clone RP23-290C4 from chromosome 3, complete sequence Length = 213637 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ccaaacaataagaaaaacaa 161 |||||||||||||||||||| Sbjct: 153931 ccaaacaataagaaaaacaa 153950
>gb|AC146791.12| Medicago truncatula clone mth2-123m17, complete sequence Length = 130971 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gtttactagcacaaattaaa 89 |||||||||||||||||||| Sbjct: 124238 gtttactagcacaaattaaa 124257
>ref|NM_001005698.1| Xenopus tropicalis amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) (app), mRNA Length = 3137 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 gtagttctccagggcaattc 499 |||||||||||||||||||| Sbjct: 1466 gtagttctccagggcaattc 1447
>gb|AC162891.6| Mus musculus chromosome 1, clone RP24-263F3, complete sequence Length = 148545 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 tcatcttgctggagctaggc 400 |||||||||||||||||||| Sbjct: 3707 tcatcttgctggagctaggc 3688
>gb|BC075266.1| Xenopus tropicalis amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease), mRNA (cDNA clone MGC:88882 IMAGE:6998307), complete cds Length = 3137 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 gtagttctccagggcaattc 499 |||||||||||||||||||| Sbjct: 1466 gtagttctccagggcaattc 1447
>gb|U18916.2|SCE9781 Saccharomyces cerevisiae chromosome V cosmids 9781, 8198, 9115, 9981, and lambda clones 3955 and 6052 Length = 68301 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 ggcaattcccatgaattttt 511 |||||||||||||||||||| Sbjct: 66686 ggcaattcccatgaattttt 66667
>dbj|AK134740.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330544B10 product:inhibitor of growth family, member 5, full insert sequence Length = 1809 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tcatcttgctggagctaggc 400 |||||||||||||||||||| Sbjct: 159 tcatcttgctggagctaggc 178
>ref|XM_293893.3| PREDICTED: Homo sapiens immunity-related GTPase family, M (IRGM), mRNA Length = 546 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 catcaggtagttctccaggg 493 |||||||||||||||||||| Sbjct: 318 catcaggtagttctccaggg 299
>dbj|AK145695.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0030J19 product:inhibitor of growth family, member 5, full insert sequence Length = 4505 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tcatcttgctggagctaggc 400 |||||||||||||||||||| Sbjct: 2854 tcatcttgctggagctaggc 2873
>gb|S69371.1| GDI1=Gdi1p [Saccharomyces cerevisiae, Genomic, 1634 nt] Length = 1634 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 ggcaattcccatgaattttt 511 |||||||||||||||||||| Sbjct: 1411 ggcaattcccatgaattttt 1392
>gb|AC010441.6| Homo sapiens chromosome 5 clone CTD-2228J3, complete sequence Length = 157076 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 catcaggtagttctccaggg 493 |||||||||||||||||||| Sbjct: 63026 catcaggtagttctccaggg 63045
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 ggttgggcgtcacgccgccc 580 |||||||||||||||||||| Sbjct: 2145309 ggttgggcgtcacgccgccc 2145328
>emb|Z82261.1|CEC35D6 Caenorhabditis elegans Cosmid C35D6, complete sequence Length = 42844 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 aaatgcattttcagattttccaaa 324 |||| ||||||||||||||||||| Sbjct: 31914 aaatccattttcagattttccaaa 31891
>gb|AC138302.3| Mus musculus BAC clone RP24-554C14 from 3, complete sequence Length = 152548 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ccaaacaataagaaaaacaa 161 |||||||||||||||||||| Sbjct: 66270 ccaaacaataagaaaaacaa 66251
>ref|NM_025454.2| Mus musculus inhibitor of growth family, member 5 (Ing5), mRNA Length = 4539 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tcatcttgctggagctaggc 400 |||||||||||||||||||| Sbjct: 2882 tcatcttgctggagctaggc 2901
>emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chromosome 15, complete sequence Length = 196812 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 53 tgagacttggaatcatggtttactagca 80 |||||||||||| |||||||||| |||| Sbjct: 30071 tgagacttggaagcatggtttacaagca 30044
>gb|AC167139.9| Mus musculus chromosome 1, clone RP23-397C14, complete sequence Length = 198105 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tcatcttgctggagctaggc 400 |||||||||||||||||||| Sbjct: 47154 tcatcttgctggagctaggc 47173 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,758,460 Number of Sequences: 3902068 Number of extensions: 5758460 Number of successful extensions: 125427 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125131 Number of HSP's gapped (non-prelim): 292 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
