ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdj15 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 118 bits (295), Expect = 2e-26 Identities = 57/76 (75%), Positives = 64/76 (84%), Gaps = 2/76 (2%) Frame = -1 Query: 405 EKSKSLGSGGSMVARLKLKGID--GRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSG 232 + ++ G GG + + +G+D GRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSG Sbjct: 46 QTAQPYGPGGGVAFK---EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSG 102 Query: 231 DVYVGGKTGLFLWAVT 184 DVYVGGKTGLFLWAVT Sbjct: 103 DVYVGGKTGLFLWAVT 118
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 100 bits (250), Expect = 4e-21 Identities = 50/73 (68%), Positives = 54/73 (73%), Gaps = 2/73 (2%) Frame = -1 Query: 396 KSLGSGGSMVARLKLKGID--GRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 223 K G GSM R G+D GR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 49 KPYGINGSMALR---DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 222 VGGKTGLFLWAVT 184 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 100 bits (250), Expect = 4e-21 Identities = 50/73 (68%), Positives = 54/73 (73%), Gaps = 2/73 (2%) Frame = -1 Query: 396 KSLGSGGSMVARLKLKGID--GRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 223 K G GSM R G+D GR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 49 KPYGINGSMALR---DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 222 VGGKTGLFLWAVT 184 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 100 bits (248), Expect = 6e-21 Identities = 50/73 (68%), Positives = 54/73 (73%), Gaps = 2/73 (2%) Frame = -1 Query: 396 KSLGSGGSMVARLKLKGID--GRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 223 K G GSM R G+D GR KGKGVYQF DKYGANVDGYSPIY ++WSPSGDVY Sbjct: 47 KPYGINGSMSLR---DGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103 Query: 222 VGGKTGLFLWAVT 184 VGG TGL +WAVT Sbjct: 104 VGGTTGLAIWAVT 116
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 99.8 bits (247), Expect = 8e-21 Identities = 49/73 (67%), Positives = 53/73 (72%), Gaps = 2/73 (2%) Frame = -1 Query: 396 KSLGSGGSMVARLKLKGID--GRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 223 K LG GG M R G+D GR GKGVYQF DKYGANVDGYSPIY EEW+P+GDVY Sbjct: 51 KPLGIGGGMKLR---DGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVY 107 Query: 222 VGGKTGLFLWAVT 184 GG TGL +WAVT Sbjct: 108 AGGTTGLLIWAVT 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 91.7 bits (226), Expect = 2e-18 Identities = 47/73 (64%), Positives = 51/73 (69%), Gaps = 2/73 (2%) Frame = -1 Query: 396 KSLGSGGSMVARLKLKGID--GRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 223 K G GSM R G+D GR KG GVY+F DKYGANVDGYSPIY +EWS SGDVY Sbjct: 52 KPFGVNGSMDLR---DGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108 Query: 222 VGGKTGLFLWAVT 184 GG TGL +WAVT Sbjct: 109 KGGVTGLAIWAVT 121
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 89.7 bits (221), Expect = 9e-18 Identities = 46/73 (63%), Positives = 50/73 (68%), Gaps = 2/73 (2%) Frame = -1 Query: 396 KSLGSGGSMVARLKLKGID--GRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 223 K G GSM R G+D GR KG GVY++ DKYGANVDGYSPIY EWS SGDVY Sbjct: 51 KPFGINGSMDLR---DGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVY 107 Query: 222 VGGKTGLFLWAVT 184 GG TGL +WAVT Sbjct: 108 KGGVTGLAIWAVT 120
>EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5)| Length = 427 Score = 33.9 bits (76), Expect = 0.56 Identities = 25/91 (27%), Positives = 34/91 (37%) Frame = +3 Query: 372 YSPRNPKTLISHKVPAESYKQHPPIPGRHRLWLRLGRYLIVFEPPTFVLD**KHPWQMLS 551 +SP PK +K P K + P P H Y+ PP P + S Sbjct: 331 HSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPP---------PVKHYS 381 Query: 552 QLFVFHKSKNFTSDYEIRMPPTVPINHYSDP 644 V+H Y + PP P++HYS P Sbjct: 382 PPPVYHSPPPPKEKYVYKSPPPPPVHHYSPP 412
>DDG_SHIFL (P0ACV3) Protein ddg| Length = 306 Score = 32.3 bits (72), Expect = 1.6 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -1 Query: 384 SGGSMVARLKLKGIDGRVAKGKGVYQFADK-YGANVDGYSPIYTPEEWSPSGDVYV 220 S +M+ R L+GI G + KG+ V+ D+ YG ++P + E + + YV Sbjct: 172 SNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVENVATTNGTYV 227
>DDG_ECOLI (P0ACV2) Protein ddg| Length = 306 Score = 32.3 bits (72), Expect = 1.6 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -1 Query: 384 SGGSMVARLKLKGIDGRVAKGKGVYQFADK-YGANVDGYSPIYTPEEWSPSGDVYV 220 S +M+ R L+GI G + KG+ V+ D+ YG ++P + E + + YV Sbjct: 172 SNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVENVATTNGTYV 227
>CAPP1_FLAPR (Q01647) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 967 Score = 31.6 bits (70), Expect = 2.8 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 13/118 (11%) Frame = -1 Query: 564 RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKS-- 391 R A+ +AKD+ + +++L D L I A + D RTPP P ++ ++ Sbjct: 189 RNCLAQLYAKDITPDDKQEL------DEALHREIQAAFR--TDEIRRTPPTPQDEMRAGM 240 Query: 390 ------LGSGGSMVAR-----LKLKGIDGRVAKGKGVYQFADKYGANVDGYSPIYTPE 250 + G R LK GI+ RV + QF+ G + DG P TPE Sbjct: 241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGKHPRVTPE 298
>ORK1_DROME (Q94526) Open rectifier potassium channel protein 1 (Two pore| domain potassium channel Ork1) Length = 1001 Score = 30.8 bits (68), Expect = 4.7 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -1 Query: 426 RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRV---AKGKGVYQ 307 R PP P+E + SL SGG + + + DG A G G YQ Sbjct: 599 RGPPPPFESNGSLASGGGGLTNMGFQMEDGATPPSALGGGAYQ 641
>CINA_SYNY3 (Q55760) CinA-like protein| Length = 416 Score = 30.8 bits (68), Expect = 4.7 Identities = 21/72 (29%), Positives = 31/72 (43%) Frame = -2 Query: 458 MPTRDRRMLLIGLRRHLMRNQSLWVPGGVWSQG*NLKELTEG*PRGRVFTSLPTSMEQML 279 M +R+ L+ L L+ N + PG +W +L LT F +P+ M QM Sbjct: 110 MAANNRKQALLPLGAELLANATGTAPGMIWHPQPDLLILT--------FPGVPSEMRQMW 161 Query: 278 MGTALYTHQKSG 243 G A+ Q G Sbjct: 162 QGVAVPYLQSQG 173
>ENDD1_MOUSE (Q8C522) Endonuclease domain-containing 1 protein precursor (EC| 3.1.30.-) Length = 501 Score = 30.0 bits (66), Expect = 8.1 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = +2 Query: 23 VVIFVSITYVLTVIIRTIIHIVWCIA 100 + +F I Y++T ++R I+H++W +A Sbjct: 341 IKLFQLIYYLVTAVLRNIVHLLWLVA 366
>RS5_DECAR (Q47J86) 30S ribosomal protein S5| Length = 175 Score = 30.0 bits (66), Expect = 8.1 Identities = 19/57 (33%), Positives = 29/57 (50%) Frame = -1 Query: 417 PAPYEKSKSLGSGGSMVARLKLKGIDGRVAKGKGVYQFADKYGANVDGYSPIYTPEE 247 PAP + + +GG+M A ++ G+ VAK G + A +DG S + TP E Sbjct: 107 PAP--EGTGIIAGGAMRAVFEVVGVTNVVAKAHGSTNPYNIVRATIDGLSKVNTPAE 161
>AKT6_ARATH (Q8GXE6) Potassium channel AKT6 (Shaker pollen inward rectifier| K(+) channel) (Potassium channel SPIK) Length = 888 Score = 30.0 bits (66), Expect = 8.1 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = -1 Query: 531 VFINQERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMV 367 V ++Q+RKL R S ++S N AD G R+P P G GGSM+ Sbjct: 773 VVVSQKRKLNNFRNSLFGIISAANSADDGGE--VPRSPAVP-------GGGGSMI 818 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,499,910 Number of Sequences: 219361 Number of extensions: 2854343 Number of successful extensions: 7638 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 7236 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7633 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 7958637276 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
