ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdj14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190168.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 373 bits (188), Expect = e-100 Identities = 303/339 (89%), Gaps = 3/339 (0%) Strand = Plus / Minus Query: 311 ccttgttgaccttggcctcacccatctccaccgcggcggccgccttcttgccgtcctcca 370 |||||||| |||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct: 751 ccttgttggtcttggcgtcggccatctccaccgcggcggccgccttcttcgcgtcctcca 692 Query: 371 cctcgtcggcgtcctcccccttgccggccggcacggcgccggcggcggggcccttgttct 430 ||||||||||| | |||||||| ||||||| | | |||||||| || ||||||| | Sbjct: 691 cctcgtcggcggcgtcccccttcccggccgccgc--cgccggcgt-ggcccccttgtggt 635 Query: 431 tccggtagatggcgtagaggatgagctgcatcaggcccaggaagctcccgcacccgttgg 490 |||||||||| ||||||||||| |||||||||| |||||| ||||||||||| || |||| Sbjct: 634 tccggtagatcgcgtagaggatcagctgcatcaagcccagaaagctcccgcatccattgg 575 Query: 491 ggatgtagatgaaggggtcgaggccgagcaggccgtagatgaaccaggaggtgccgcaga 550 |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 574 ggatcgcgatgaaagggtcgcggccgagcaggccgtagatgaaccaggaggtgccgcaca 515 Query: 551 ggaacacggacagggacagcaggaacggcatgaactccacgctcttggtcttgatcacca 610 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 514 ggaacacggacagggagagcaggaacggcatgaactccacgctcttcgtcttgatcacca 455 Query: 611 acctcatgatggagagcggcgaggcgtacatgcagatgg 649 ||||||||||||||| |||||||||||||||||||||| Sbjct: 454 gcctcatgatggagagaggcgaggcgtacatgcagatgg 416
>dbj|AK099531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031J21, full insert sequence Length = 1161 Score = 373 bits (188), Expect = e-100 Identities = 303/339 (89%), Gaps = 3/339 (0%) Strand = Plus / Minus Query: 311 ccttgttgaccttggcctcacccatctccaccgcggcggccgccttcttgccgtcctcca 370 |||||||| |||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct: 895 ccttgttggtcttggcgtcggccatctccaccgcggcggccgccttcttcgcgtcctcca 836 Query: 371 cctcgtcggcgtcctcccccttgccggccggcacggcgccggcggcggggcccttgttct 430 ||||||||||| | |||||||| ||||||| | | |||||||| || ||||||| | Sbjct: 835 cctcgtcggcggcgtcccccttcccggccgccgc--cgccggcgt-ggcccccttgtggt 779 Query: 431 tccggtagatggcgtagaggatgagctgcatcaggcccaggaagctcccgcacccgttgg 490 |||||||||| ||||||||||| |||||||||| |||||| ||||||||||| || |||| Sbjct: 778 tccggtagatcgcgtagaggatcagctgcatcaagcccagaaagctcccgcatccattgg 719 Query: 491 ggatgtagatgaaggggtcgaggccgagcaggccgtagatgaaccaggaggtgccgcaga 550 |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 718 ggatcgcgatgaaagggtcgcggccgagcaggccgtagatgaaccaggaggtgccgcaca 659 Query: 551 ggaacacggacagggacagcaggaacggcatgaactccacgctcttggtcttgatcacca 610 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 658 ggaacacggacagggagagcaggaacggcatgaactccacgctcttcgtcttgatcacca 599 Query: 611 acctcatgatggagagcggcgaggcgtacatgcagatgg 649 ||||||||||||||| |||||||||||||||||||||| Sbjct: 598 gcctcatgatggagagaggcgaggcgtacatgcagatgg 560
>dbj|AK067960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123F10, full insert sequence Length = 1208 Score = 373 bits (188), Expect = e-100 Identities = 303/339 (89%), Gaps = 3/339 (0%) Strand = Plus / Minus Query: 311 ccttgttgaccttggcctcacccatctccaccgcggcggccgccttcttgccgtcctcca 370 |||||||| |||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct: 903 ccttgttggtcttggcgtcggccatctccaccgcggcggccgccttcttcgcgtcctcca 844 Query: 371 cctcgtcggcgtcctcccccttgccggccggcacggcgccggcggcggggcccttgttct 430 ||||||||||| | |||||||| ||||||| | | |||||||| || ||||||| | Sbjct: 843 cctcgtcggcggcgtcccccttcccggccgccgc--cgccggcgt-ggcccccttgtggt 787 Query: 431 tccggtagatggcgtagaggatgagctgcatcaggcccaggaagctcccgcacccgttgg 490 |||||||||| ||||||||||| |||||||||| |||||| ||||||||||| || |||| Sbjct: 786 tccggtagatcgcgtagaggatcagctgcatcaagcccagaaagctcccgcatccattgg 727 Query: 491 ggatgtagatgaaggggtcgaggccgagcaggccgtagatgaaccaggaggtgccgcaga 550 |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 726 ggatcgcgatgaaagggtcgcggccgagcaggccgtagatgaaccaggaggtgccgcaca 667 Query: 551 ggaacacggacagggacagcaggaacggcatgaactccacgctcttggtcttgatcacca 610 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 666 ggaacacggacagggagagcaggaacggcatgaactccacgctcttcgtcttgatcacca 607 Query: 611 acctcatgatggagagcggcgaggcgtacatgcagatgg 649 ||||||||||||||| |||||||||||||||||||||| Sbjct: 606 gcctcatgatggagagaggcgaggcgtacatgcagatgg 568
>gb|AY106071.1| Zea mays PCO141993 mRNA sequence Length = 1300 Score = 361 bits (182), Expect = 2e-96 Identities = 224/238 (94%) Strand = Plus / Minus Query: 412 gcggcggggcccttgttcttccggtagatggcgtagaggatgagctgcatcaggcccagg 471 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 897 gcggcggggcccttgtttttccggtagatggcgtacaggatgagctgcatcaggcccagg 838 Query: 472 aagctcccgcacccgttggggatgtagatgaaggggtcgaggccgagcaggccgtagatg 531 ||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| Sbjct: 837 aagctcccgcacccgttcgggataataatgaaggggtcgcggccgaggaggccgtagatg 778 Query: 532 aaccaggaggtgccgcagaggaacacggacagggacagcaggaacggcatgaactccacg 591 ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| Sbjct: 777 aaccaggaggtgccgcacaggaacacggccagggagagcaggaacggcatgaactccacg 718 Query: 592 ctcttggtcttgatcaccaacctcatgatggagagcggcgaggcgtacatgcagatgg 649 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 717 ctcttcgtcttgatcaccagcctcatgatggagagcggcgaggcgtacatgcagatgg 660
>dbj|AK063475.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B01, full insert sequence Length = 1211 Score = 218 bits (110), Expect = 2e-53 Identities = 200/230 (86%) Strand = Plus / Minus Query: 420 gcccttgttcttccggtagatggcgtagaggatgagctgcatcaggcccaggaagctccc 479 ||||||||| || ||||||||||||||||| | ||||||| ||| || |||||||| Sbjct: 872 gcccttgttgttgcggtagatggcgtagagcaccagctgcacggcgccaagaaagctccc 813 Query: 480 gcacccgttggggatgtagatgaaggggtcgaggccgagcaggccgtagatgaaccagga 539 ||||||||| || || || |||||||||| ||||||||| ||||||||||||||| || Sbjct: 812 gcacccgttcggaatcgtgacgaaggggtcgcggccgagcaagccgtagatgaaccacga 753 Query: 540 ggtgccgcagaggaacacggacagggacagcaggaacggcatgaactccacgctcttggt 599 |||||||| |||||||||| ||| |||| ||||||||||||| ||||||||||||| || Sbjct: 752 cgtgccgcacaggaacacggccagcgacatcaggaacggcatgtactccacgctcttcgt 693 Query: 600 cttgatcaccaacctcatgatggagagcggcgaggcgtacatgcagatgg 649 ||||||||||| ||||||||||||||| || ||||||||||||||||||| Sbjct: 692 cttgatcaccagcctcatgatggagaggggggaggcgtacatgcagatgg 643
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 186 bits (94), Expect = 6e-44 Identities = 112/118 (94%) Strand = Plus / Minus Query: 498 gatgaaggggtcgaggccgagcaggccgtagatgaaccaggaggtgccgcagaggaacac 557 |||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 38249817 gatgaaagggtcgcggccgagcaggccgtagatgaaccaggaggtgccgcacaggaacac 38249758 Query: 558 ggacagggacagcaggaacggcatgaactccacgctcttggtcttgatcaccaacctc 615 ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 38249757 ggacagggagagcaggaacggcatgaactccacgctcttcgtcttgatcaccagcctc 38249700 Score = 145 bits (73), Expect = 2e-31 Identities = 158/184 (85%), Gaps = 3/184 (1%) Strand = Plus / Minus Query: 311 ccttgttgaccttggcctcacccatctccaccgcggcggccgccttcttgccgtcctcca 370 |||||||| |||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct: 38250549 ccttgttggtcttggcgtcggccatctccaccgcggcggccgccttcttcgcgtcctcca 38250490 Query: 371 cctcgtcggcgtcctcccccttgccggccggcacggcgccggcggcggggcccttgttct 430 ||||||||||| | |||||||| ||||||| || ||||||| | || ||||||| | Sbjct: 38250489 cctcgtcggcggcgtcccccttcccggccg--ccgccgccggc-gtggcccccttgtggt 38250433 Query: 431 tccggtagatggcgtagaggatgagctgcatcaggcccaggaagctcccgcacccgttgg 490 |||||||||| ||||||||||| |||||||||| |||||| ||||||||||| || |||| Sbjct: 38250432 tccggtagatcgcgtagaggatcagctgcatcaagcccagaaagctcccgcatccattgg 38250373 Query: 491 ggat 494 |||| Sbjct: 38250372 ggat 38250369 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 615 catgatggagagcggcgaggcgtacatgcagatgg 649 |||||||||||| |||||||||||||||||||||| Sbjct: 38249452 catgatggagagaggcgaggcgtacatgcagatgg 38249418 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 573 gaacggcatgaactccacgctcttggtcttgatcac 608 |||||||||| ||||||||||||| ||||| ||||| Sbjct: 23876078 gaacggcatgtactccacgctcttcgtctttatcac 23876043 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcacca 610 |||||| ||||||||||||| ||| ||||||||| Sbjct: 19957434 ggcatgtactccacgctcttcgtcctgatcacca 19957401 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcctc 386 ||||||||||||||||||||| |||| Sbjct: 8490110 ccgtcctccacctcgtcggcgacctc 8490135
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 186 bits (94), Expect = 6e-44 Identities = 112/118 (94%) Strand = Plus / Minus Query: 498 gatgaaggggtcgaggccgagcaggccgtagatgaaccaggaggtgccgcagaggaacac 557 |||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 169051 gatgaaagggtcgcggccgagcaggccgtagatgaaccaggaggtgccgcacaggaacac 168992 Query: 558 ggacagggacagcaggaacggcatgaactccacgctcttggtcttgatcaccaacctc 615 ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 168991 ggacagggagagcaggaacggcatgaactccacgctcttcgtcttgatcaccagcctc 168934 Score = 145 bits (73), Expect = 2e-31 Identities = 158/184 (85%), Gaps = 3/184 (1%) Strand = Plus / Minus Query: 311 ccttgttgaccttggcctcacccatctccaccgcggcggccgccttcttgccgtcctcca 370 |||||||| |||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct: 169783 ccttgttggtcttggcgtcggccatctccaccgcggcggccgccttcttcgcgtcctcca 169724 Query: 371 cctcgtcggcgtcctcccccttgccggccggcacggcgccggcggcggggcccttgttct 430 ||||||||||| | |||||||| ||||||| || ||||||| | || ||||||| | Sbjct: 169723 cctcgtcggcggcgtcccccttcccggccg--ccgccgccggc-gtggcccccttgtggt 169667 Query: 431 tccggtagatggcgtagaggatgagctgcatcaggcccaggaagctcccgcacccgttgg 490 |||||||||| ||||||||||| |||||||||| |||||| ||||||||||| || |||| Sbjct: 169666 tccggtagatcgcgtagaggatcagctgcatcaagcccagaaagctcccgcatccattgg 169607 Query: 491 ggat 494 |||| Sbjct: 169606 ggat 169603 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 615 catgatggagagcggcgaggcgtacatgcagatgg 649 |||||||||||| |||||||||||||||||||||| Sbjct: 168686 catgatggagagaggcgaggcgtacatgcagatgg 168652
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 186 bits (94), Expect = 6e-44 Identities = 112/118 (94%) Strand = Plus / Minus Query: 498 gatgaaggggtcgaggccgagcaggccgtagatgaaccaggaggtgccgcagaggaacac 557 |||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 10642 gatgaaagggtcgcggccgagcaggccgtagatgaaccaggaggtgccgcacaggaacac 10583 Query: 558 ggacagggacagcaggaacggcatgaactccacgctcttggtcttgatcaccaacctc 615 ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 10582 ggacagggagagcaggaacggcatgaactccacgctcttcgtcttgatcaccagcctc 10525 Score = 145 bits (73), Expect = 2e-31 Identities = 158/184 (85%), Gaps = 3/184 (1%) Strand = Plus / Minus Query: 311 ccttgttgaccttggcctcacccatctccaccgcggcggccgccttcttgccgtcctcca 370 |||||||| |||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct: 11374 ccttgttggtcttggcgtcggccatctccaccgcggcggccgccttcttcgcgtcctcca 11315 Query: 371 cctcgtcggcgtcctcccccttgccggccggcacggcgccggcggcggggcccttgttct 430 ||||||||||| | |||||||| ||||||| || ||||||| | || ||||||| | Sbjct: 11314 cctcgtcggcggcgtcccccttcccggccg--ccgccgccggc-gtggcccccttgtggt 11258 Query: 431 tccggtagatggcgtagaggatgagctgcatcaggcccaggaagctcccgcacccgttgg 490 |||||||||| ||||||||||| |||||||||| |||||| ||||||||||| || |||| Sbjct: 11257 tccggtagatcgcgtagaggatcagctgcatcaagcccagaaagctcccgcatccattgg 11198 Query: 491 ggat 494 |||| Sbjct: 11197 ggat 11194 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 615 catgatggagagcggcgaggcgtacatgcagatgg 649 |||||||||||| |||||||||||||||||||||| Sbjct: 10277 catgatggagagaggcgaggcgtacatgcagatgg 10243
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 141 bits (71), Expect = 3e-30 Identities = 104/115 (90%) Strand = Plus / Minus Query: 501 gaaggggtcgaggccgagcaggccgtagatgaaccaggaggtgccgcagaggaacacgga 560 |||||||||| ||||||||| ||||||||||||||| || |||||||| |||||||||| Sbjct: 42199 gaaggggtcgcggccgagcaagccgtagatgaaccacgacgtgccgcacaggaacacggc 42140 Query: 561 cagggacagcaggaacggcatgaactccacgctcttggtcttgatcaccaacctc 615 ||| |||| ||||||||||||| ||||||||||||| ||||||||||||| |||| Sbjct: 42139 cagcgacatcaggaacggcatgtactccacgctcttcgtcttgatcaccagcctc 42085 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 615 catgatggagagcggcgaggcgtacatgcagatgg 649 |||||||||||| || ||||||||||||||||||| Sbjct: 41849 catgatggagaggggggaggcgtacatgcagatgg 41815 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Minus Query: 420 gcccttgttcttccggtagatggcgtagaggatgagctgcatcaggcccaggaagctccc 479 ||||||||| || ||||||||||||||||| | ||||||| ||| || |||||||| Sbjct: 42370 gcccttgttgttgcggtagatggcgtagagcaccagctgcacggcgccaagaaagctccc 42311 Query: 480 gcacccgtt 488 ||||||||| Sbjct: 42310 gcacccgtt 42302
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 141 bits (71), Expect = 3e-30 Identities = 104/115 (90%) Strand = Plus / Minus Query: 501 gaaggggtcgaggccgagcaggccgtagatgaaccaggaggtgccgcagaggaacacgga 560 |||||||||| ||||||||| ||||||||||||||| || |||||||| |||||||||| Sbjct: 20728975 gaaggggtcgcggccgagcaagccgtagatgaaccacgacgtgccgcacaggaacacggc 20728916 Query: 561 cagggacagcaggaacggcatgaactccacgctcttggtcttgatcaccaacctc 615 ||| |||| ||||||||||||| ||||||||||||| ||||||||||||| |||| Sbjct: 20728915 cagcgacatcaggaacggcatgtactccacgctcttcgtcttgatcaccagcctc 20728861 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 615 catgatggagagcggcgaggcgtacatgcagatgg 649 |||||||||||| || ||||||||||||||||||| Sbjct: 20728625 catgatggagaggggggaggcgtacatgcagatgg 20728591 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Minus Query: 420 gcccttgttcttccggtagatggcgtagaggatgagctgcatcaggcccaggaagctccc 479 ||||||||| || ||||||||||||||||| | ||||||| ||| || |||||||| Sbjct: 20729146 gcccttgttgttgcggtagatggcgtagagcaccagctgcacggcgccaagaaagctccc 20729087 Query: 480 gcacccgtt 488 ||||||||| Sbjct: 20729086 gcacccgtt 20729078
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 267 gtcgacggcctgctcgtcgacgtccacggcg 297 ||||||||||||||||||||||||||||||| Sbjct: 2816346 gtcgacggcctgctcgtcgacgtccacggcg 2816376
>ref|XM_483522.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1500 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 576 cggcatgaactccacgctcttggtcttgatcacc 609 |||||||||||| ||||||||||||||||||||| Sbjct: 678 cggcatgaactcgacgctcttggtcttgatcacc 645
>ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702C09.33 mRNA Length = 1517 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 576 cggcatgaactccacgctcttggtcttgatcacc 609 |||||||||||| ||||||||||||||||||||| Sbjct: 679 cggcatgaactcgacgctcttggtcttgatcacc 646
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 576 cggcatgaactccacgctcttggtcttgatcacc 609 |||||||||||| ||||||||||||||||||||| Sbjct: 26719640 cggcatgaactcgacgctcttggtcttgatcacc 26719673 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cggccggcacggcgccggcggcgg 418 |||||||||||||| ||||||||| Sbjct: 3923173 cggccggcacggcggcggcggcgg 3923196
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 576 cggcatgaactccacgctcttggtcttgatcacc 609 |||||||||||| ||||||||||||||||||||| Sbjct: 131167 cggcatgaactcgacgctcttggtcttgatcacc 131200
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 576 cggcatgaactccacgctcttggtcttgatcacc 609 |||||||||||| ||||||||||||||||||||| Sbjct: 62982 cggcatgaactcgacgctcttggtcttgatcacc 63015
>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence Length = 1500 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 576 cggcatgaactccacgctcttggtcttgatcacc 609 |||||||||||| ||||||||||||||||||||| Sbjct: 678 cggcatgaactcgacgctcttggtcttgatcacc 645
>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence Length = 1517 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 576 cggcatgaactccacgctcttggtcttgatcacc 609 |||||||||||| ||||||||||||||||||||| Sbjct: 679 cggcatgaactcgacgctcttggtcttgatcacc 646
>ref|XM_465955.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1562 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatg 621 |||||||||||||||||||||||| |||||||| ||| |||||| Sbjct: 700 ggcatgaactccacgctcttggtccggatcaccagcctgatgatg 656
>dbj|AK109114.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C05, full insert sequence Length = 1492 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcgg 629 |||||||||||||||||||||||| ||||||| ||| ||||||| |||||| Sbjct: 643 ggcatgaactccacgctcttggtcctgatcacttgcctgatgatggtgagcgg 591
>dbj|AK103266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124G19, full insert sequence Length = 1562 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatg 621 |||||||||||||||||||||||| |||||||| ||| |||||| Sbjct: 700 ggcatgaactccacgctcttggtccggatcaccagcctgatgatg 656
>gb|AY105503.1| Zea mays PCO075069 mRNA sequence Length = 549 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 565 gacagcaggaacggcatgaactccacgctcttggtcttgatcaccaacctcatgatggag 624 ||||| ||||| |||||| |||| |||||||||||||||||||| |||||||| | | Sbjct: 319 gacaggaggaagggcatgtactcaacgctcttggtcttgatcactcgactcatgatagtg 260 Query: 625 agcggcgaggcgtacat 641 || || ||||||||||| Sbjct: 259 agtggtgaggcgtacat 243
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 577 ggcatgaactccacgctcttggtcttgatcac 608 |||||||||||||||||||||||| ||||||| Sbjct: 12981269 ggcatgaactccacgctcttggtcctgatcac 12981300
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 577 ggcatgaactccacgctcttggtcttgatcac 608 |||||||||||||||||||||||| ||||||| Sbjct: 12978044 ggcatgaactccacgctcttggtcctgatcac 12978075
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 577 ggcatgaactccacgctcttggtcttgatcac 608 |||||||||||||||||||||||| ||||||| Sbjct: 58967 ggcatgaactccacgctcttggtcctgatcac 58998
>ref|XM_465111.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1377 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| |||| |||||||| |||||| |||||| || | |||| Sbjct: 707 ggcatgtactccacgctcttagtctggatcaccattttcatgacggagaggggggcggcg 648 Query: 637 tacatgc 643 ||||||| Sbjct: 647 tacatgc 641
>ref|XM_507468.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1383 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| |||| |||||||| |||||| |||||| || | |||| Sbjct: 707 ggcatgtactccacgctcttagtctggatcaccattttcatgacggagaggggggcggcg 648 Query: 637 tacatgc 643 ||||||| Sbjct: 647 tacatgc 641
>ref|XM_507467.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1384 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| |||| |||||||| |||||| |||||| || | |||| Sbjct: 708 ggcatgtactccacgctcttagtctggatcaccattttcatgacggagaggggggcggcg 649 Query: 637 tacatgc 643 ||||||| Sbjct: 648 tacatgc 642
>ref|XM_506777.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1485 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| |||| |||||||| |||||| |||||| || | |||| Sbjct: 704 ggcatgtactccacgctcttagtctggatcaccattttcatgacggagaggggggcggcg 645 Query: 637 tacatgc 643 ||||||| Sbjct: 644 tacatgc 638
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 573 gaacggcatgaactccacgctcttggt 599 ||||||||||||||||||||||||||| Sbjct: 82052 gaacggcatgaactccacgctcttggt 82078
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 573 gaacggcatgaactccacgctcttggt 599 ||||||||||||||||||||||||||| Sbjct: 17574241 gaacggcatgaactccacgctcttggt 17574267 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 402 cacggcgccggcggcggggcccttgttcttcc 433 ||||||| |||||||||||| ||| ||||||| Sbjct: 24734215 cacggcggcggcggcggggcgcttcttcttcc 24734184
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctc 615 |||||||||||||||||||||||| |||||||| |||| Sbjct: 18555053 ggcatgaactccacgctcttggtccggatcaccagcctc 18555091 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 577 ggcatgaactccacgctcttggtcttgatcacca 610 |||||| ||||||||||||| |||| |||||||| Sbjct: 11593470 ggcatgtactccacgctcttagtctggatcacca 11593503 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcc 384 ||||||||| |||||||||||||| Sbjct: 28472677 ccgtcctcctcctcgtcggcgtcc 28472700
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1789_D08 Length = 128673 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctc 615 |||||||||||||||||||||||| |||||||| |||| Sbjct: 96192 ggcatgaactccacgctcttggtccggatcaccagcctc 96230
>dbj|AK104467.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C10, full insert sequence Length = 1383 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| |||| |||||||| |||||| |||||| || | |||| Sbjct: 707 ggcatgtactccacgctcttagtctggatcaccattttcatgacggagaggggggcggcg 648 Query: 637 tacatgc 643 ||||||| Sbjct: 647 tacatgc 641
>dbj|AK104411.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G12, full insert sequence Length = 1377 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| |||| |||||||| |||||| |||||| || | |||| Sbjct: 707 ggcatgtactccacgctcttagtctggatcaccattttcatgacggagaggggggcggcg 648 Query: 637 tacatgc 643 ||||||| Sbjct: 647 tacatgc 641
>dbj|AK101913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071H09, full insert sequence Length = 1494 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 573 gaacggcatgaactccacgctcttggt 599 ||||||||||||||||||||||||||| Sbjct: 733 gaacggcatgaactccacgctcttggt 707
>dbj|AK100174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027A16, full insert sequence Length = 1484 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| |||| |||||||| |||||| |||||| || | |||| Sbjct: 703 ggcatgtactccacgctcttagtctggatcaccattttcatgacggagaggggggcggcg 644 Query: 637 tacatgc 643 ||||||| Sbjct: 643 tacatgc 637
>dbj|AK071676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108F17, full insert sequence Length = 1384 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| |||| |||||||| |||||| |||||| || | |||| Sbjct: 708 ggcatgtactccacgctcttagtctggatcaccattttcatgacggagaggggggcggcg 649 Query: 637 tacatgc 643 ||||||| Sbjct: 648 tacatgc 642
>gb|AY104514.1| Zea mays PCO071788 mRNA sequence Length = 616 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| | ||||||||||| |||| ||||||||| |||||| |||||||||| ||| Sbjct: 613 ggcatgtattccacgctctttgtctggatcaccaatttcatgaccgagagcggcgcagcg 554 Query: 637 tacatgc 643 ||||||| Sbjct: 553 tacatgc 547
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 573 gaacggcatgaactccacgctcttggt 599 ||||||||||||||||||||||||||| Sbjct: 17668065 gaacggcatgaactccacgctcttggt 17668091 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 402 cacggcgccggcggcggggcccttgttcttcc 433 ||||||| |||||||||||| ||| ||||||| Sbjct: 25045885 cacggcggcggcggcggggcgcttcttcttcc 25045854
>ref|NM_101997.1| Arabidopsis thaliana unknown protein AT1G21460 mRNA, complete cds Length = 990 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 ||||| ||||| || ||||| ||||| | |||||| |||||||||||||| || || ||| Sbjct: 562 ggcataaactctacactcttcgtctttaccaccaatctcatgatggagagtggagaagcg 503 Query: 637 tacatg 642 |||||| Sbjct: 502 tacatg 497
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 573 gaacggcatgaactccacgctcttggtcttgatcacca 610 |||||||||||||||| |||| || ||||||||||||| Sbjct: 121234 gaacggcatgaactccgcgcttttcgtcttgatcacca 121271
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 573 gaacggcatgaactccacgctcttggtcttgatcacca 610 |||||||||||||||| |||| || ||||||||||||| Sbjct: 19402008 gaacggcatgaactccgcgcttttcgtcttgatcacca 19402045 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 565 gacagcaggaacggcatgaactccacgctcttggtctt 602 |||||||| ||||||||| ||||||||||||| ||||| Sbjct: 4051490 gacagcagcaacggcatgtactccacgctctttgtctt 4051453
>emb|BX813530.1|CNS0AEJE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB22ZE06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 950 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 ||||| ||||| || ||||| ||||| | |||||| |||||||||||||| || || ||| Sbjct: 536 ggcataaactctacactcttcgtctttaccaccaatctcatgatggagagtggagaagcg 477 Query: 637 tacatg 642 |||||| Sbjct: 476 tacatg 471
>gb|BT005476.1| Arabidopsis thaliana clone U50074 unknown protein (At1g21460) mRNA, complete cds Length = 775 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 ||||| ||||| || ||||| ||||| | |||||| |||||||||||||| || || ||| Sbjct: 485 ggcataaactctacactcttcgtctttaccaccaatctcatgatggagagtggagaagcg 426 Query: 637 tacatg 642 |||||| Sbjct: 425 tacatg 420
>gb|BT004185.1| Arabidopsis thaliana clone RAFL15-42-O11 (R50074) unknown protein (At1g21460) mRNA, complete cds Length = 960 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 ||||| ||||| || ||||| ||||| | |||||| |||||||||||||| || || ||| Sbjct: 560 ggcataaactctacactcttcgtctttaccaccaatctcatgatggagagtggagaagcg 501 Query: 637 tacatg 642 |||||| Sbjct: 500 tacatg 495
>gb|AY088391.1| Arabidopsis thaliana clone 6411 mRNA, complete sequence Length = 990 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 ||||| ||||| || ||||| ||||| | |||||| |||||||||||||| || || ||| Sbjct: 562 ggcataaactctacactcttcgtctttaccaccaatctcatgatggagagtggagaagcg 503 Query: 637 tacatg 642 |||||| Sbjct: 502 tacatg 497
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 565 gacagcaggaacggcatgaactccacgctcttggtctt 602 |||||||| ||||||||| ||||||||||||| ||||| Sbjct: 34971 gacagcagcaacggcatgtactccacgctctttgtctt 34934
>ref|NM_192689.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 780 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 573 gaacggcatgaactccacgctcttggtcttgatcac 608 |||||||||| ||||||||||||| ||||| ||||| Sbjct: 501 gaacggcatgtactccacgctcttcgtctttatcac 466
>gb|BT018599.1| Zea mays clone EL01N0449A02.d mRNA sequence Length = 1762 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtc 600 |||||||||||||||||||||||| Sbjct: 746 ggcatgaactccacgctcttggtc 723
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Plus Query: 392 tgccggccggcacggcgccggcgg 415 |||||||||||||||||||||||| Sbjct: 778700 tgccggccggcacggcgccggcgg 778723
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 573 gaacggcatgaactccacgctcttggtcttgatcac 608 |||||||||| ||||||||||||| ||||| ||||| Sbjct: 22482 gaacggcatgtactccacgctcttcgtctttatcac 22447
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 393 gccggccggcacggcgccggcgg 415 ||||||||||||||||||||||| Sbjct: 19266 gccggccggcacggcgccggcgg 19244
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 568 agcaggaacggcatgaactccacgctcttggtctt 602 ||||| ||||||||| ||||||||||||| ||||| Sbjct: 3976657 agcagcaacggcatgtactccacgctcttcgtctt 3976623
>dbj|AK119866.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A10, full insert sequence Length = 3441 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 514 ccgagcaggccgtagatgaaccaggag 540 ||||||||||||||||||||| ||||| Sbjct: 2989 ccgagcaggccgtagatgaacgaggag 2963
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 568 agcaggaacggcatgaactccacgctcttggtctt 602 ||||| ||||||||| ||||||||||||| ||||| Sbjct: 3976633 agcagcaacggcatgtactccacgctcttcgtctt 3976599
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 568 agcaggaacggcatgaactccacgctcttggtctt 602 ||||| ||||||||| ||||||||||||| ||||| Sbjct: 13067 agcagcaacggcatgtactccacgctcttcgtctt 13033
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 568 agcaggaacggcatgaactccacgctcttggtctt 602 ||||| ||||||||| ||||||||||||| ||||| Sbjct: 138633 agcagcaacggcatgtactccacgctcttcgtctt 138599
>ref|NM_187899.1| Oryza sativa (japonica cultivar-group), Ozsa8341 predicted mRNA Length = 873 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcctc 386 ||||||||||||||||||||| |||| Sbjct: 239 ccgtcctccacctcgtcggcgacctc 264
>ref|XM_475994.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 714 Score = 44.1 bits (22), Expect = 0.57 Identities = 55/66 (83%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| ||| |||||| ||||||||| |||||||| |||| Sbjct: 500 ggcatgtactccacgctctttgtcgcgatcacttgtttcatgatggtgagcggcgcggcg 441 Query: 637 tacatg 642 |||||| Sbjct: 440 tacatg 435
>gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, complete sequence Length = 213829 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 agaaaaacaaatcaacaagcag 136 |||||||||||||||||||||| Sbjct: 77497 agaaaaacaaatcaacaagcag 77476
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcctc 386 ||||||||||||||||||||| |||| Sbjct: 65263 ccgtcctccacctcgtcggcgacctc 65288
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcacca 610 |||||| ||||||||||||| ||| ||||||||| Sbjct: 60343 ggcatgtactccacgctcttcgtcctgatcacca 60310
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0705D01 Length = 147174 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcctc 386 ||||||||||||||||||||| |||| Sbjct: 105065 ccgtcctccacctcgtcggcgacctc 105090
>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0010K08 Length = 184760 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 577 ggcatgaactccacgctcttggtcttgatcacca 610 |||||| ||||||||||||| |||| |||||||| Sbjct: 39759 ggcatgtactccacgctcttagtctggatcacca 39792
>dbj|AK104255.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D11, full insert sequence Length = 1168 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcacca 610 |||||| ||||||||||||| ||| ||||||||| Sbjct: 685 ggcatgtactccacgctcttcgtcctgatcacca 652
>dbj|AK104143.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G10, full insert sequence Length = 1096 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcacca 610 |||||| ||||||||||||| ||| ||||||||| Sbjct: 689 ggcatgtactccacgctcttcgtcctgatcacca 656
>dbj|AK069614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023E05, full insert sequence Length = 1363 Score = 44.1 bits (22), Expect = 0.57 Identities = 55/66 (83%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcaccaacctcatgatggagagcggcgaggcg 636 |||||| ||||||||||||| ||| |||||| ||||||||| |||||||| |||| Sbjct: 836 ggcatgtactccacgctctttgtcgcgatcacttgtttcatgatggtgagcggcgcggcg 777 Query: 637 tacatg 642 |||||| Sbjct: 776 tacatg 771
>dbj|AK066226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057K13, full insert sequence Length = 1213 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcacca 610 |||||| ||||||||||||| ||| ||||||||| Sbjct: 690 ggcatgtactccacgctcttcgtcctgatcacca 657
>dbj|AK058528.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A04, full insert sequence Length = 1370 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcctc 386 ||||||||||||||||||||| |||| Sbjct: 529 ccgtcctccacctcgtcggcgacctc 554
>gb|AY103821.1| Zea mays PCO084551 mRNA sequence Length = 2318 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 399 cggcacggcgccggcggcgggg 420 |||||||||||||||||||||| Sbjct: 294 cggcacggcgccggcggcgggg 273
>ref|XM_380810.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein (FG00634.1) partial mRNA Length = 714 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 ggccttgttgaccttggcctc 329 ||||||||||||||||||||| Sbjct: 675 ggccttgttgaccttggcctc 655
>gb|AC115051.6| Mus musculus chromosome 1, clone RP24-340A23, complete sequence Length = 158391 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 taccaagccaagaaaaacaaatcaa 129 |||||||| |||||||||||||||| Sbjct: 78091 taccaagctaagaaaaacaaatcaa 78115
>emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granaticin biosynthetic gene cluster Length = 39250 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 343 gcggcggccgccttcttgccgtcctccac 371 |||||||||| ||||| |||||||||||| Sbjct: 27797 gcggcggccgtcttctcgccgtcctccac 27825
>emb|X84374.3|SCARD1GN Saccharothrix mutabilis subsp. capreolus A201A biosynthetic gene cluster Length = 33676 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cggcgccggcggcggggccct 424 ||||||||||||||||||||| Sbjct: 4363 cggcgccggcggcggggccct 4343
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 cacctcgtcggcgtcctcccc 389 ||||||||||||||||||||| Sbjct: 3352461 cacctcgtcggcgtcctcccc 3352481
>emb|X16300.1|SVPKS Streptomyces violaceoruber polyketide synthase gene cluster Length = 5820 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 343 gcggcggccgccttcttgccgtcctccac 371 |||||||||| ||||| |||||||||||| Sbjct: 613 gcggcggccgtcttctcgccgtcctccac 641
>emb|X16144.1|SVGRA S. violaceoruber DNA for granaticin polyketide synthase Length = 6793 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 343 gcggcggccgccttcttgccgtcctccac 371 |||||||||| ||||| |||||||||||| Sbjct: 673 gcggcggccgtcttctcgccgtcctccac 701
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 395 cggccggcacggcgccggcggcggg 419 |||||||| |||||||||||||||| Sbjct: 318768 cggccggctcggcgccggcggcggg 318792
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 395 cggccggcacggcgccggcggcggg 419 |||||||| |||||||||||||||| Sbjct: 226622 cggccggctcggcgccggcggcggg 226646
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 395 cggccggcacggcgccggcggcggg 419 |||||||| |||||||||||||||| Sbjct: 94104 cggccggctcggcgccggcggcggg 94128
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 ccggccggcacggcgccggcggcgg 418 ||||||||||| ||||||||||||| Sbjct: 709132 ccggccggcacagcgccggcggcgg 709108
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 497 agatgaaggggtcgaggccga 517 ||||||||||||||||||||| Sbjct: 454602 agatgaaggggtcgaggccga 454582
>dbj|AB167818.1| Streptomyces violaceoruber gra-orf6 gene for ketoreductase, complete cds Length = 750 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 343 gcggcggccgccttcttgccgtcctccac 371 |||||||||| ||||| |||||||||||| Sbjct: 155 gcggcggccgtcttctcgccgtcctccac 127
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 266 tgtcgacggcctgctcgtcgacgtc 290 ||||| ||||||||||||||||||| Sbjct: 237236 tgtcggcggcctgctcgtcgacgtc 237260
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 gccggccggcacggcgccggcggcg 417 ||||||| ||||||||||||||||| Sbjct: 3513881 gccggccagcacggcgccggcggcg 3513905 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 tgccggccggcacggcgccg 411 |||||||||||||||||||| Sbjct: 343954 tgccggccggcacggcgccg 343935
>gb|AY108458.1| Zea mays PCO137991 mRNA sequence Length = 991 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 577 ggcatgaactccacgctcttggtcttgatcacc 609 |||| |||||| |||||||||||||||| |||| Sbjct: 163 ggcaggaactcgacgctcttggtcttgaccacc 131
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 ccggccggcacggcgccggcggcgg 418 ||||||||||| ||||||||||||| Sbjct: 739605 ccggccggcacagcgccggcggcgg 739581
>gb|AF092918.1|AF092918 Pseudomonas alcaligenes outer membrane Xcp-secretion system gene cluster Length = 20758 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 505 gggtcgaggccgagcaggccg 525 ||||||||||||||||||||| Sbjct: 11374 gggtcgaggccgagcaggccg 11354
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 acgctcttggtcttgatcacc 609 ||||||||||||||||||||| Sbjct: 3650012 acgctcttggtcttgatcacc 3649992
>emb|X57477.1|OCCCBI2 Rabbit mRNA for calcium channel BI-2 Length = 8405 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 cggcacggcgccggcggcggggccc 423 |||||||||| |||||||||||||| Sbjct: 7012 cggcacggcggcggcggcggggccc 7036
>emb|X57476.1|OCCCBI1 Rabbit mRNA for calcium channel BI-1 Length = 8820 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 cggcacggcgccggcggcggggccc 423 |||||||||| |||||||||||||| Sbjct: 7435 cggcacggcggcggcggcggggccc 7459
>emb|X57689.1|OCCCBI2CB Rabbit mRNA for calcium channel BI-2 (lambda CBP109 and CB101) Length = 8405 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 cggcacggcgccggcggcggggccc 423 |||||||||| |||||||||||||| Sbjct: 7012 cggcacggcggcggcggcggggccc 7036
>emb|X57688.1|OCCCBI1CB Rabbit mRNA for calcium channel BI-1 (lambda CBP109 and CB101) Length = 8820 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 cggcacggcgccggcggcggggccc 423 |||||||||| |||||||||||||| Sbjct: 7435 cggcacggcggcggcggcggggccc 7459
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gtcctccacctcgtcggcgt 382 |||||||||||||||||||| Sbjct: 1042469 gtcctccacctcgtcggcgt 1042488
>ref|XM_480256.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2274 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cggccggcacggcgccggcggcgg 418 |||||||||||||| ||||||||| Sbjct: 540 cggccggcacggcggcggcggcgg 563
>ref|XM_467251.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1024 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcc 384 ||||||||| |||||||||||||| Sbjct: 300 ccgtcctcctcctcgtcggcgtcc 323
>ref|NM_153675.1| Homo sapiens forkhead box A2 (FOXA2), transcript variant 2, mRNA Length = 2230 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 1026 cggcggccgccttcttgccg 1007
>ref|NM_021784.3| Homo sapiens forkhead box A2 (FOXA2), transcript variant 1, mRNA Length = 2242 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 1038 cggcggccgccttcttgccg 1019
>ref|XM_472982.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2010 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cctgctcgtcgacgtccacg 294 |||||||||||||||||||| Sbjct: 1177 cctgctcgtcgacgtccacg 1158
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 ggtcgaggccgagcaggccg 525 |||||||||||||||||||| Sbjct: 2891064 ggtcgaggccgagcaggccg 2891045
>gb|AC106169.5| Rattus norvegicus x BAC CH230-105D14 (Children's Hospital Oakland Research Institute) complete sequence Length = 227592 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 591 gctcttggtcttgatcacca 610 |||||||||||||||||||| Sbjct: 192535 gctcttggtcttgatcacca 192554
>ref|XM_360857.1| Magnaporthe grisea 70-15 hypothetical protein (MG03400.4) partial mRNA Length = 3870 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 cgtcctccacctcgtcggcg 381 |||||||||||||||||||| Sbjct: 3211 cgtcctccacctcgtcggcg 3192
>ref|XM_415907.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC417662), mRNA Length = 770 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 cggcgccggcggcggggccc 423 |||||||||||||||||||| Sbjct: 195 cggcgccggcggcggggccc 214
>gb|AY657601.1| Synthetic construct Peudomonas aeruginosa clone FLH041302.01F PA4833 gene, partial cds Length = 618 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 ctcggcagcgccggctacacctgg 255 |||||||||||||||| ||||||| Sbjct: 448 ctcggcagcgccggcttcacctgg 471
>ref|XM_959088.1| Neurospora crassa OR74A hypothetical protein (NCU03132.1) partial mRNA Length = 2196 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 tcctccacctcgtcggcgtcctcc 387 ||||||||||| |||||||||||| Sbjct: 1171 tcctccacctcttcggcgtcctcc 1194
>gb|AF176110.1| Homo sapiens hepatocyte nuclear factor-3 beta (HNF3B) gene, complete cds Length = 5227 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 3476 cggcggccgccttcttgccg 3457
>ref|XM_330567.1| Neurospora crassa OR74A hypothetical protein (NCU03132.1) partial mRNA Length = 2196 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 tcctccacctcgtcggcgtcctcc 387 ||||||||||| |||||||||||| Sbjct: 1171 tcctccacctcttcggcgtcctcc 1194
>ref|XM_446051.1| Candida glabrata CBS138, CAGL0F01815g partial mRNA Length = 945 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 gatggagagcggcgaggcgt 637 |||||||||||||||||||| Sbjct: 318 gatggagagcggcgaggcgt 337
>gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome 2, complete sequence Length = 176452 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 aagccaagaaaaacaaatcaacaa 132 ||||||||||||||||| |||||| Sbjct: 145176 aagccaagaaaaacaaagcaacaa 145153
>ref|XM_809076.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein (Tc00.1047053511215.119) partial mRNA Length = 1803 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ttgccgtcctccacctcgtcggcg 381 ||||||||||||||||| |||||| Sbjct: 1649 ttgccgtcctccacctcctcggcg 1626
>gb|AC122456.4| Mus musculus BAC clone RP24-265M23 from chromosome 16, complete sequence Length = 158610 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 104 gtaccaagccaagaaaaacaaatcaaca 131 ||||||||||||| |||| ||||||||| Sbjct: 153520 gtaccaagccaaggaaaagaaatcaaca 153547
>ref|XM_797553.1| Trypanosoma cruzi strain CL Brener paraxonemal rod protein PAR2 (Tc00.1047053434931.10) partial mRNA Length = 795 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ttgccgtcctccacctcgtcggcg 381 ||||||||||||||||| |||||| Sbjct: 641 ttgccgtcctccacctcctcggcg 618
>gb|BC006545.2| Homo sapiens forkhead box A2, mRNA (cDNA clone IMAGE:2821244), partial cds Length = 1891 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 831 cggcggccgccttcttgccg 812
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 402 cacggcgccggcggcggggcccttgttcttcc 433 ||||||| |||||||||||| ||| ||||||| Sbjct: 88273 cacggcggcggcggcggggcgcttcttcttcc 88304
>emb|AL356114.12| Human DNA sequence from clone RP11-257I14 on chromosome 10 Contains part of the PCDH15 gene for protocadherin 15 and the 3' end of a novel gene, complete sequence Length = 124856 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aagaaaaacaaatcaacaag 133 |||||||||||||||||||| Sbjct: 13918 aagaaaaacaaatcaacaag 13937
>emb|AL121722.9|HSJ788L20 Human DNA sequence from clone RP4-788L20 on chromosome 20 Contains the FOXA2 gene for forkhead box A2, a novel gene, the 5' end of the C20orf56 gene for chromosome 20 open reading frame 56, the 5' end of a novel gene and five CpG islands, complete sequence Length = 120869 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 34271 cggcggccgccttcttgccg 34290
>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence Length = 927101 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 gatggagagcggcgaggcgt 637 |||||||||||||||||||| Sbjct: 180097 gatggagagcggcgaggcgt 180078
>emb|BX842637.1| Neurospora crassa DNA linkage group I cosmid contig 5C2 Length = 98769 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 tcctccacctcgtcggcgtcctcc 387 ||||||||||| |||||||||||| Sbjct: 61506 tcctccacctcttcggcgtcctcc 61483
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 tgccggccggcacggcgccggcgg 415 |||||||||||||| ||||||||| Sbjct: 59059 tgccggccggcacgccgccggcgg 59082
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cctgctcgtcgacgtccacg 294 |||||||||||||||||||| Sbjct: 39141 cctgctcgtcgacgtccacg 39122
>gb|AC069413.14| Homo sapiens 3 BAC RP11-53D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172964 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 accgtctcacagccctcctt 54 |||||||||||||||||||| Sbjct: 154398 accgtctcacagccctcctt 154379
>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine K203, and chemokine ah294 genes, complete cds Length = 112034 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 cacagccctcctttaggttg 61 |||||||||||||||||||| Sbjct: 95173 cacagccctcctttaggttg 95192
>gb|BC019288.1|BC019288 Homo sapiens, hepatocyte nuclear factor 3, beta, clone IMAGE:2821244, mRNA, partial cds Length = 1891 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 831 cggcggccgccttcttgccg 812
>gb|AF349434.1|AF349434 Mycobacterium smegmatis single-stranded DNA-binding protein gene, complete cds Length = 498 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tggccttgttgaccttggcc 327 |||||||||||||||||||| Sbjct: 361 tggccttgttgaccttggcc 342
>emb|BX005169.18| Zebrafish DNA sequence from clone CH211-81D10 in linkage group 14, complete sequence Length = 164868 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gtaacaactctactactcct 188 |||||||||||||||||||| Sbjct: 104792 gtaacaactctactactcct 104773
>dbj|AK049615.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530004I09 product:CBFA2T1 identified gene homolog (human), full insert sequence Length = 1776 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aagaaaaacaaatcaacaag 133 |||||||||||||||||||| Sbjct: 900 aagaaaaacaaatcaacaag 881
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cctgctcgtcgacgtccacg 294 |||||||||||||||||||| Sbjct: 24479510 cctgctcgtcgacgtccacg 24479491
>gb|AC018662.3|AC018662 Human Chromosome 7 clone RP11-339C9, complete sequence Length = 173845 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ccaagaaaaacaaatcaaca 131 |||||||||||||||||||| Sbjct: 28600 ccaagaaaaacaaatcaaca 28581
>gb|AE004896.1| Pseudomonas aeruginosa PAO1, section 457 of 529 of the complete genome Length = 11735 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 ctcggcagcgccggctacacctgg 255 |||||||||||||||| ||||||| Sbjct: 6339 ctcggcagcgccggcttcacctgg 6362
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 cggcgccggcggcggggccc 423 |||||||||||||||||||| Sbjct: 4687506 cggcgccggcggcggggccc 4687525 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 ccggccggcacggcgccggcggcg 417 ||||||||| |||||||||||||| Sbjct: 1920005 ccggccggcccggcgccggcggcg 1920028
>gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, complete sequence Length = 197346 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ccaagaaaaacaaatcaaca 131 |||||||||||||||||||| Sbjct: 134271 ccaagaaaaacaaatcaaca 134252
>dbj|AP005605.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_C01 Length = 192857 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cggccggcacggcgccggcggcgg 418 |||||||||||||| ||||||||| Sbjct: 188390 cggccggcacggcggcggcggcgg 188413
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcc 384 ||||||||| |||||||||||||| Sbjct: 96798 ccgtcctcctcctcgtcggcgtcc 96821
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcc 384 ||||||||| |||||||||||||| Sbjct: 41518 ccgtcctcctcctcgtcggcgtcc 41541
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 ggccgagcaggccgtagatg 531 |||||||||||||||||||| Sbjct: 387029 ggccgagcaggccgtagatg 387010
>emb|AL954708.10| Zebrafish DNA sequence from clone CH211-160I4, complete sequence Length = 163996 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gtaacaactctactactcct 188 |||||||||||||||||||| Sbjct: 121272 gtaacaactctactactcct 121291
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0462E11 Length = 166115 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cggccggcacggcgccggcggcgg 418 |||||||||||||| ||||||||| Sbjct: 10470 cggccggcacggcggcggcggcgg 10493
>dbj|AP000386.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MLD15 Length = 82430 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 caagaaaaacaaatcaacaa 132 |||||||||||||||||||| Sbjct: 13987 caagaaaaacaaatcaacaa 14006
>ref|XM_320601.2| Anopheles gambiae str. PEST ENSANGP00000008728 (ENSANGG00000006575), partial mRNA Length = 3444 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ccttcttgccgtcctccacc 372 |||||||||||||||||||| Sbjct: 3004 ccttcttgccgtcctccacc 2985
>gb|BC011780.2| Homo sapiens forkhead box A2, transcript variant 1, mRNA (cDNA clone MGC:19807 IMAGE:3940139), complete cds Length = 1937 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 877 cggcggccgccttcttgccg 858
>dbj|AK062683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H07, full insert sequence Length = 1021 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 ccgtcctccacctcgtcggcgtcc 384 ||||||||| |||||||||||||| Sbjct: 300 ccgtcctcctcctcgtcggcgtcc 323
>gb|AF147787.1|AF147787 Homo sapiens hepatocyte nuclear factor-3 beta gene, complete cds Length = 4471 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 3558 cggcggccgccttcttgccg 3539
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 ctgcatcaggcccaggaagc 475 |||||||||||||||||||| Sbjct: 4867202 ctgcatcaggcccaggaagc 4867221
>emb|CR931784.7| Zebrafish DNA sequence from clone DKEY-237H12 in linkage group 14, complete sequence Length = 223042 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gtaacaactctactactcct 188 |||||||||||||||||||| Sbjct: 104196 gtaacaactctactactcct 104215
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 gccggcacggcgccggcggc 416 |||||||||||||||||||| Sbjct: 4338245 gccggcacggcgccggcggc 4338226
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cctgctcgtcgacgtccacg 294 |||||||||||||||||||| Sbjct: 72832 cctgctcgtcgacgtccacg 72813
>emb|AL845525.13| Mouse DNA sequence from clone RP23-298B10 on chromosome 2, complete sequence Length = 131438 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 aagccaagaaaaacaaatcaacaa 132 ||||||||||||||||| |||||| Sbjct: 112083 aagccaagaaaaacaaagcaacaa 112106
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgacggcctgctcgtcgacg 288 |||||||||||||||||||| Sbjct: 3763068 cgacggcctgctcgtcgacg 3763049
>emb|AL136059.3|CNS01DVW Human chromosome 5 DNA sequence BAC R-391B7 of library RPCI-11 from chromosome 5 of Homo sapiens (Human), complete sequence Length = 188334 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aaaacaaatcaacaagcagg 137 |||||||||||||||||||| Sbjct: 103710 aaaacaaatcaacaagcagg 103729
>emb|AL844572.8| Mouse DNA sequence from clone RP23-40C5 on chromosome 4, complete sequence Length = 78062 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aagaaaaacaaatcaacaag 133 |||||||||||||||||||| Sbjct: 74585 aagaaaaacaaatcaacaag 74566
>gb|M97548.1|TRBPAR2A Trypanosoma cruzi major paraflagellar rod protein (PAR2) mRNA, complete cds Length = 2057 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ttgccgtcctccacctcgtcggcg 381 ||||||||||||||||| |||||| Sbjct: 1697 ttgccgtcctccacctcctcggcg 1674
>dbj|AB028021.1| Homo sapiens HNF-3beta mRNA for hepatocyte nuclear factor-3 beta, complete cds Length = 1944 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggcggccgccttcttgccg 363 |||||||||||||||||||| Sbjct: 1031 cggcggccgccttcttgccg 1012 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,329,673 Number of Sequences: 3902068 Number of extensions: 5329673 Number of successful extensions: 122111 Number of sequences better than 10.0: 154 Number of HSP's better than 10.0 without gapping: 161 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 117418 Number of HSP's gapped (non-prelim): 4690 length of query: 649 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 626 effective length of database: 17,143,297,704 effective search space: 10731704362704 effective search space used: 10731704362704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
