ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdj13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CU24_ARADI (P80516) Adult-specific rigid cuticular protein 12.4 ... 32 1.7
2DREB_CHICK (P18302) Drebrin (Developmentally-regulated brain pro... 31 3.8
3NFCP_CONPS (Q95W11) GFP-like non-fluorescent chromoprotein (cpCP) 31 3.8
4DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (... 31 3.8
5GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 30 5.0
6YQU3_CAEEL (Q09550) Hypothetical protein F26C11.3 precursor 30 5.0
7NFCP_CONGI (Q95W86) GFP-like non-fluorescent chromoprotein (cgCP) 30 6.5

>CU24_ARADI (P80516) Adult-specific rigid cuticular protein 12.4 (ACP 12.4)|
          Length = 126

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 343 MLCGEGVYSQSFNNNGIIAHSRVASGCVGPVIDDYIYGD 227
           M    G Y+  FN      HSRV SG  G  +  Y Y D
Sbjct: 5   MTLAGGAYNFGFNTGDATGHSRVESGTAGSAVGSYSYID 43



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>DREB_CHICK (P18302) Drebrin (Developmentally-regulated brain protein)|
          Length = 651

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 29/93 (31%), Positives = 36/93 (38%)
 Frame = +3

Query: 315 CEYTPSPHSIFSNSMSRPRKLSLVGCAILLPWYSQYMQRVSSVPGGVTLTGQHKRTLVPS 494
           C  TP+  S F  S S  RK+S  GC       S      +S P G       +RT  P+
Sbjct: 349 CHRTPNLSSFFPCSQSDYRKVSAAGC-------SPCESSPASTPLG------EQRTRAPA 395

Query: 495 LGHSAKKSIGGVPAEWVARKLMWEQRYQPLPGP 593
               A       P+  VA     EQ + P PGP
Sbjct: 396 EETPATPKDSPSPSTQVAEPAATEQHW-PFPGP 427



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>NFCP_CONPS (Q95W11) GFP-like non-fluorescent chromoprotein (cpCP)|
          Length = 227

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
 Frame = -2

Query: 649 YKLHVICGVNEHVDGPVRRGPGKGWYRCSHI-----------NFLATHSAGTPPML 515
           YK+ V+ G N   DGPV +    GW  C+ I           N +A   +G PP++
Sbjct: 117 YKVKVL-GTNFPADGPVMKNISGGWEPCTEIVYQDNGVLRGRNVMALKVSGRPPLI 171



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>DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-)|
           (DEAH box protein 34)
          Length = 1145

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +1

Query: 310 MTVNTPLLRIASSQTRCRAHGNSPLLGVQSYYHGTHSTCNVFLQCLEVSRSQDSTSAPWC 489
           ++V +P  R A S   C A    PL   +S      +  NVF   ++V   +   S  WC
Sbjct: 614 LSVQSPFTRSAQSNLDC-ATARRPL---ESDQGDPFTLFNVFNAWVQVKSERSGNSRKWC 669

Query: 490 HRWDIQQRRALEV 528
            R  +++ R  E+
Sbjct: 670 RRRGVEEHRLYEM 682



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>GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 528

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +1

Query: 271 LPHGCVR*SHCC*MTVNTPLLRIASSQTRCRAHGNSPLLGVQSYYHGTHSTCNVFL 438
           LP G VR +H    T NTP   +A  Q R        L GVQ +    HSTC + L
Sbjct: 147 LPEGFVRLAH----TANTPEAAVAHLQRR--------LYGVQFHPEVVHSTCGMAL 190



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>YQU3_CAEEL (Q09550) Hypothetical protein F26C11.3 precursor|
          Length = 1317

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 594 GGLAKAGTVAPTSTSLLPILRVHLQCSSLLNVPTMAPRCACAVL 463
           G LA   T   TST  +PI+R+    +   +VPT      C VL
Sbjct: 79  GVLAFKTTTIETSTKFIPIVRIDSTTAETTSVPTTTTSIQCGVL 122



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>NFCP_CONGI (Q95W86) GFP-like non-fluorescent chromoprotein (cgCP)|
          Length = 227

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
 Frame = -2

Query: 649 YKLHVICGVNEHVDGPVRRGPGKGWYRCSHI-----------NFLATHSAGTPPML 515
           YK+ V+ G N   DGPV +    GW  C+ I           N +A   +G PP++
Sbjct: 117 YKVKVL-GTNFPADGPVMKKISGGWEPCTEIVYQDNGVLRGRNVMALKVSGRPPLI 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,961,817
Number of Sequences: 219361
Number of extensions: 2285924
Number of successful extensions: 5928
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5922
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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