Clone Information

BLAST Search Result

Clone Name	rbasdj08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	APAG_RHILO (Q98BB4) Protein apaG	111	2e-24
2	APAG_BRUSU (Q8G2L5) Protein apaG	111	2e-24
3	APAG_BRUME (Q8YFA4) Protein apaG	109	8e-24
4	APAG_RHIME (Q92S97) Protein apaG	107	5e-23
5	APAG_AGRT5 (Q8UI68) Protein apaG	105	2e-22
6	APAG_YERPE (Q8ZIK6) Protein apaG	103	7e-22
7	APAG_SHEON (Q8EB92) Protein apaG	102	9e-22
8	APAG_RHOPA (Q6N0J2) Protein apaG	100	5e-21
9	APAG_PHOLL (Q7N8V8) Protein apaG	100	5e-21
10	APAG_RHIET (Q9ZES3) Protein apaG	99	1e-20
11	APAG_VIBCH (Q9KUS3) Protein apaG	96	9e-20
12	APAG_BORPE (Q7VU61) Protein apaG	96	9e-20
13	APAG_BORPA (Q7W393) Protein apaG	96	9e-20
14	APAG_BORBR (Q7WEL1) Protein apaG	96	9e-20
15	APAG_BDEBA (Q6MK56) Protein apaG	96	9e-20
16	APAG_WOLPM (Q73G26) Protein apaG	96	1e-19
17	APAG_SHIFL (P62675) Protein apaG	95	2e-19
18	APAG_ECOLI (P62672) Protein apaG	95	2e-19
19	APAG_ECOL6 (P62673) Protein apaG	95	2e-19
20	APAG_ECO57 (P62674) Protein apaG	95	2e-19
21	APAG_VIBPA (Q87ST7) Protein apaG	95	2e-19
22	APAG_BRAJA (Q89VE6) Protein apaG	95	3e-19
23	APAG_VIBVY (Q7MP87) Protein apaG	94	4e-19
24	APAG_VIBVU (Q8DED1) Protein apaG	94	4e-19
25	APAG_CHRVO (Q7NW07) Protein apaG	94	6e-19
26	APAG_SALTY (Q56017) Protein apaG (Protein corD)	93	1e-18
27	APAG_XYLFA (Q9PBJ5) Protein apaG	93	1e-18
28	APAG_XANCP (Q8PCE4) Protein apaG	93	1e-18
29	APAG_CAUCR (Q9A655) Protein apaG	92	1e-18
30	APAG_PSEAE (Q9I5U6) Protein apaG	92	1e-18
31	APAG_XYLFT (Q87C84) Protein apaG	92	1e-18
32	APAG_NITEU (Q82UC1) Protein apaG	92	2e-18
33	APAG_SALTI (Q8Z9J8) Protein apaG (Protein corD)	91	3e-18
34	APAG_XANAC (Q8PP26) Protein apaG	90	6e-18
35	APAG_PSEPK (Q88QT7) Protein apaG	90	8e-18
36	APAG_PSESM (Q88A47) Protein apaG	88	3e-17
37	APAG_RALSO (Q8XVF3) Protein apaG	87	7e-17
38	APAG_PHOPR (Q6LV42) Protein apaG	83	8e-16
39	FBX3_HUMAN (Q9UK99) F-box only protein 3	75	2e-13
40	FBX3_MOUSE (Q9DC63) F-box only protein 3	75	2e-13
41	PDIP2_MOUSE (Q91VA6) Polymerase delta-interacting protein 2	73	1e-12
42	PDIP2_HUMAN (Q9Y2S7) Polymerase delta-interacting protein 2 (38 ...	73	1e-12
43	APAG_DEIRA (Q9RXS8) Protein apaG	72	2e-12
44	DPOL_THEAG (O33845) DNA polymerase (EC 2.7.7.7) (Pol Tfu) [Conta...	32	2.1
45	AMID_STRR6 (P0A4N0) Oligopeptide transport system permease prote...	32	2.7
46	AMID_STRPN (P0A4M9) Oligopeptide transport system permease prote...	32	2.7
47	RUMB_VIBCH (Q9KL20) 23S rRNA (uracil-5-)-methyltransferase rumB ...	30	7.8

>APAG_RHILO (Q98BB4) Protein apaG|
          Length = 130

 Score =  111 bits (278), Expect = 2e-24
 Identities = 59/124 (47%), Positives = 79/124 (63%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTEN 487
           A T  I VQVR  Y+E RS P + ++ + Y+I I N S   VQLL R+W +TD  GR E 
Sbjct: 4   AVTRNIEVQVRPFYLEDRSDPSENRYVWGYQITIDNQSDEFVQLLSRYWHITDGAGRVEE 63

Query: 486 VWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
           V G GVVG+QP + P   ++Y+S CPL+TP+G M G + M+  +K G  TF+IAI  FSL
Sbjct: 64  VRGPGVVGDQPELNPGDSYQYTSGCPLSTPSGIMVGHYTMR--NKRG-ETFDIAIPAFSL 120

Query: 306 SILG 295
            + G
Sbjct: 121 DLPG 124

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>APAG_BRUSU (Q8G2L5) Protein apaG|
          Length = 130

 Score =  111 bits (278), Expect = 2e-24
 Identities = 56/122 (45%), Positives = 75/122 (61%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTEN 487
           A T GI V V   Y+E +S+P + ++ + YR+ I NNS   VQL  R+W +TDANG  + 
Sbjct: 4   AVTRGIEVTVEPFYLEVQSEPEENRYVWGYRVTIVNNSSETVQLCSRYWQITDANGHVQE 63

Query: 486 VWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
           V G GVVGEQPV+ P   ++YSS CPL T +G M G ++MK  D    + F I I  FSL
Sbjct: 64  VRGSGVVGEQPVLDPGASYQYSSGCPLTTSSGVMVGRYQMKGED---GAQFEIEIPAFSL 120

Query: 306 SI 301
            +
Sbjct: 121 DV 122

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>APAG_BRUME (Q8YFA4) Protein apaG|
          Length = 130

 Score =  109 bits (273), Expect = 8e-24
 Identities = 55/122 (45%), Positives = 75/122 (61%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTEN 487
           A T GI V V   Y+E +S+P + ++ + YR+ I NNS   VQL  R+W +TDANG  + 
Sbjct: 4   AVTRGIEVTVEPFYLEVQSEPEENRYVWGYRVTIVNNSSETVQLCSRYWQITDANGHVQE 63

Query: 486 VWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
           V G GVVG+QPV+ P   ++YSS CPL T +G M G ++MK  D    + F I I  FSL
Sbjct: 64  VRGSGVVGKQPVLDPGDSYQYSSGCPLTTSSGVMVGRYQMKGED---GAQFEIEIPAFSL 120

Query: 306 SI 301
            +
Sbjct: 121 DV 122

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>APAG_RHIME (Q92S97) Protein apaG|
          Length = 130

 Score =  107 bits (266), Expect = 5e-23
 Identities = 55/124 (44%), Positives = 77/124 (62%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTEN 487
           A T  I V V   Y+E +S P   ++ + YRI I N+S  AV+L+ R+W +TD NG+ + 
Sbjct: 4   ALTRDIEVTVEPYYLEEQSDPDDSRYVWGYRIIIANHSGLAVRLMTRYWHITDENGQVDE 63

Query: 486 VWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
           V G GV+GEQP++ P   +EYSS CPL+TP+G M G + M   +  G  TF++AI  FSL
Sbjct: 64  VSGPGVIGEQPLLNPGDTYEYSSGCPLDTPSGVMFGHYSM---EAEGGETFDVAIPAFSL 120

Query: 306 SILG 295
              G
Sbjct: 121 DSPG 124

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>APAG_AGRT5 (Q8UI68) Protein apaG|
          Length = 130

 Score =  105 bits (261), Expect = 2e-22
 Identities = 53/124 (42%), Positives = 74/124 (59%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTEN 487
           A T  I V V   Y+E +S P   ++ + Y++ I NNS   V+L+ R+W +TD NG+ + 
Sbjct: 4   ALTRDIEVTVDPYYLEEQSDPDDDRYVWGYKVVIANNSDVPVKLVNRYWHITDQNGQVDE 63

Query: 486 VWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
           V+G GVVGEQP + P   +EYSS CPL+TP+G M G +EM   +      FN+ I  FSL
Sbjct: 64  VYGPGVVGEQPQLKPGDSYEYSSGCPLDTPSGLMFGHYEM---ETENGEVFNVTIPAFSL 120

Query: 306 SILG 295
              G
Sbjct: 121 DSPG 124

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>APAG_YERPE (Q8ZIK6) Protein apaG|
          Length = 125

 Score =  103 bits (256), Expect = 7e-22
 Identities = 54/117 (46%), Positives = 76/117 (64%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I VQV S+Y+E++S P + +F FAY + + N  +  VQLL R+W++T++NGR   V G G
Sbjct: 7   ICVQVHSIYVETQSIPEEERFVFAYTVTVRNLGRSNVQLLGRYWLITNSNGRQTEVQGEG 66

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           V+GEQP+I P   F+Y+S   L TP G MEG +EM  ID +G + F   I  F L+I
Sbjct: 67  VIGEQPLILPGNEFQYTSGAVLETPLGTMEGHYEM--IDHLGQA-FRTVIPVFRLAI 120

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>APAG_SHEON (Q8EB92) Protein apaG|
          Length = 126

 Score =  102 bits (255), Expect = 9e-22
 Identities = 55/119 (46%), Positives = 74/119 (62%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           IRV+V++ YIE +S P   K+ F+Y I I N  ++A +L  RHWI+TDANG+T  V G G
Sbjct: 8   IRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAG 67

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 295
           VVGE P I P T ++Y+S   L+TP G M G + M  + + G   FN  I PF L+  G
Sbjct: 68  VVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGM--VSESGEH-FNAIIKPFRLATPG 123

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>APAG_RHOPA (Q6N0J2) Protein apaG|
          Length = 130

 Score =  100 bits (249), Expect = 5e-21
 Identities = 52/120 (43%), Positives = 72/120 (60%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTEN 487
           A T  I V V   Y+  RS     ++F++Y + ITN+ +  V+L  RHW++TDA+GRT+ 
Sbjct: 4   AVTRRIEVTVEPNYLPERSSAENRQYFWSYTVVITNSGEETVKLRTRHWVITDASGRTQE 63

Query: 486 VWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
           V G GVVGEQPV+ P   FEY+S  PL T +G M G ++M   +      F I + PFSL
Sbjct: 64  VRGEGVVGEQPVLAPGERFEYTSGVPLPTASGFMAGRYQM---ETEAGEKFEIDVPPFSL 120

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>APAG_PHOLL (Q7N8V8) Protein apaG|
          Length = 125

 Score =  100 bits (249), Expect = 5e-21
 Identities = 54/117 (46%), Positives = 75/117 (64%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + +QV+SVY+ES+S P + +F FAY I I N  +  VQL+ R+W++T+++     V G G
Sbjct: 7   VSIQVQSVYVESQSCPDQRRFVFAYTITIRNLGRERVQLINRYWLITNSDSHQTEVQGEG 66

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVGEQP+I P T + Y+S   L TP G MEG +EM  ID  G   F +AI  F L+I
Sbjct: 67  VVGEQPIIQPGTEYRYTSGAILETPLGTMEGHYEM--IDHNG-EPFRVAIPVFRLAI 120

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>APAG_RHIET (Q9ZES3) Protein apaG|
          Length = 130

 Score = 99.4 bits (246), Expect = 1e-20
 Identities = 53/124 (42%), Positives = 75/124 (60%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTEN 487
           A T  I V V   Y+E +S P   ++ + YRI I+NNS  AV+L+ R+W +TD NG+ + 
Sbjct: 4   ALTRDIEVVVEPFYLEEQSDPEDDRYVWGYRIVISNNSGVAVRLVNRYWNITDQNGQVDE 63

Query: 486 VWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
           V G GVVGEQP + P   +EYSS CPL+TP+  M G ++M+  +      F++ I  FSL
Sbjct: 64  VTGPGVVGEQPRLSPGDTYEYSSGCPLDTPSAVMFGHYQMETDE---GELFDVDIPAFSL 120

Query: 306 SILG 295
              G
Sbjct: 121 DSPG 124

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>APAG_VIBCH (Q9KUS3) Protein apaG|
          Length = 126

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 54/117 (46%), Positives = 74/117 (63%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I++QV++ YIE +S P   +F FAY I I N S + VQL+ R W++TDA+G+   V G G
Sbjct: 8   IKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDG 67

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVGEQP I     + YSS   L+TP G M+G + M  ID+ G S F + I PF L++
Sbjct: 68  VVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLM--IDEQGES-FTVEIEPFRLAV 121

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>APAG_BORPE (Q7VU61) Protein apaG|
          Length = 131

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 47/117 (40%), Positives = 67/117 (57%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + V V   Y+  +S P + ++ FAY +RITN      Q++ RHWI+TD   R + V G+G
Sbjct: 13  LTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLG 72

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVG+QP++ P   FEY+S CPL TP G M G +   H        F + IA F L++
Sbjct: 73  VVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTY---HCVGENGIPFEVPIAEFLLAM 126

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>APAG_BORPA (Q7W393) Protein apaG|
          Length = 131

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 47/117 (40%), Positives = 67/117 (57%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + V V   Y+  +S P + ++ FAY +RITN      Q++ RHWI+TD   R + V G+G
Sbjct: 13  LTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLG 72

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVG+QP++ P   FEY+S CPL TP G M G +   H        F + IA F L++
Sbjct: 73  VVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTY---HCVGENGIPFEVPIAEFLLAM 126

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>APAG_BORBR (Q7WEL1) Protein apaG|
          Length = 131

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 47/117 (40%), Positives = 67/117 (57%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + V V   Y+  +S P + ++ FAY +RITN      Q++ RHWI+TD   R + V G+G
Sbjct: 13  LTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLG 72

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVG+QP++ P   FEY+S CPL TP G M G +   H        F + IA F L++
Sbjct: 73  VVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTY---HCVGENGIPFEVPIAEFLLAM 126

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>APAG_BDEBA (Q6MK56) Protein apaG|
          Length = 127

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = -3

Query: 648 RVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGV 469
           ++  + VY+ S S+P +G  FFAY+I ITN      QL+ RHW++TDA G+ E V G GV
Sbjct: 10  QITAKVVYVPSESRPDEGYHFFAYKITITNTGSTPAQLMSRHWVITDALGKKEEVRGPGV 69

Query: 468 VGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSS--TFNIAIAPFSL 307
           VG QP I P   FEY SACPL T  G M G +       VG S  +F++ +  F L
Sbjct: 70  VGLQPKIQPGQTFEYDSACPLTTSTGSMVGRYFF-----VGESGESFSVEVPEFYL 120

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>APAG_WOLPM (Q73G26) Protein apaG|
          Length = 133

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 48/119 (40%), Positives = 70/119 (58%)
 Frame = -3

Query: 663 TTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENV 484
           TT  + V V  +YIE +S P +  + + Y ++I N SQ  +QLL RHW + D  G+   +
Sbjct: 7   TTNFVEVTVLPIYIEEQSIPYENCYVWMYNVKIKNKSQSTIQLLSRHWQIIDYKGKVNEI 66

Query: 483 WGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
            GVGV+GEQPVI     F+Y+S   LN P+G M+G +E  + + +    F + I PFSL
Sbjct: 67  AGVGVIGEQPVIKSGEVFKYTSGTYLNVPSGIMQGKYEFLNEESI--KVFEVMIPPFSL 123

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>APAG_SHIFL (P62675) Protein apaG|
          Length = 125

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 51/115 (44%), Positives = 74/115 (64%)
 Frame = -3

Query: 645 VQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVV 466
           +QV+SVYIE++S P   ++ FAY + I N  +  VQLL R+W++T+ NGR   V G GVV
Sbjct: 9   IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVV 68

Query: 465 GEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           G QP+I P   ++Y+S   + TP G M+G +EM  ID+ G   F+I I  F L++
Sbjct: 69  GVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEM--IDENG-VPFSIDIPVFRLAV 120

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>APAG_ECOLI (P62672) Protein apaG|
          Length = 125

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 51/115 (44%), Positives = 74/115 (64%)
 Frame = -3

Query: 645 VQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVV 466
           +QV+SVYIE++S P   ++ FAY + I N  +  VQLL R+W++T+ NGR   V G GVV
Sbjct: 9   IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVV 68

Query: 465 GEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           G QP+I P   ++Y+S   + TP G M+G +EM  ID+ G   F+I I  F L++
Sbjct: 69  GVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEM--IDENG-VPFSIDIPVFRLAV 120

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>APAG_ECOL6 (P62673) Protein apaG|
          Length = 125

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 51/115 (44%), Positives = 74/115 (64%)
 Frame = -3

Query: 645 VQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVV 466
           +QV+SVYIE++S P   ++ FAY + I N  +  VQLL R+W++T+ NGR   V G GVV
Sbjct: 9   IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVV 68

Query: 465 GEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           G QP+I P   ++Y+S   + TP G M+G +EM  ID+ G   F+I I  F L++
Sbjct: 69  GVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEM--IDENG-VPFSIDIPVFRLAV 120

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>APAG_ECO57 (P62674) Protein apaG|
          Length = 125

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 51/115 (44%), Positives = 74/115 (64%)
 Frame = -3

Query: 645 VQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVV 466
           +QV+SVYIE++S P   ++ FAY + I N  +  VQLL R+W++T+ NGR   V G GVV
Sbjct: 9   IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVV 68

Query: 465 GEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           G QP+I P   ++Y+S   + TP G M+G +EM  ID+ G   F+I I  F L++
Sbjct: 69  GVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEM--IDENG-VPFSIDIPVFRLAV 120

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>APAG_VIBPA (Q87ST7) Protein apaG|
          Length = 126

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 53/117 (45%), Positives = 72/117 (61%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I++QV + YIE +S P   +F FAY I I N SQ+ VQL+ R W++TD+NG+   V G G
Sbjct: 8   IKIQVHTKYIEEQSNPELQRFVFAYVITIKNLSQQTVQLISRRWLITDSNGKQMTVEGEG 67

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVG+QP I     + YSS   L TP G M+G ++M  +D+ G   F   I PF L+I
Sbjct: 68  VVGQQPFIPSNDEYTYSSGTALETPVGVMQGHYKM--LDEKGQE-FITEIEPFRLAI 121

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>APAG_BRAJA (Q89VE6) Protein apaG|
          Length = 130

 Score = 94.7 bits (234), Expect = 3e-19
 Identities = 51/120 (42%), Positives = 72/120 (60%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTEN 487
           A T  I V V   ++  +S   + ++F++Y I ITN+ +  VQL  RHWI+TDA GR + 
Sbjct: 4   AVTRQIEVTVEPNFVPEQSSADRSRYFWSYTIVITNSGEETVQLKTRHWIITDATGRQQE 63

Query: 486 VWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
           V G GVVGEQP + P   FEY+S  PL+T +G M G ++M  + + G   F I +  FSL
Sbjct: 64  VKGEGVVGEQPTLAPGERFEYTSGVPLSTASGFMTGRYQM--VSESG-ERFEIDVPTFSL 120

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>APAG_VIBVY (Q7MP87) Protein apaG|
          Length = 126

 Score = 94.0 bits (232), Expect = 4e-19
 Identities = 52/123 (42%), Positives = 74/123 (60%)
 Frame = -3

Query: 669 DATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTE 490
           D +   I++QV + Y+E +S P   ++ FAY I I N+S  +VQLL R W++TDANG+  
Sbjct: 2   DVSQPRIQIQVHTKYVEEQSNPELARYIFAYIITIKNHSSESVQLLSRRWLITDANGKQI 61

Query: 489 NVWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFS 310
           +V G GVVG+QP I     + YSS   L+TP G M+G + M   D  G   F + I PF 
Sbjct: 62  SVEGDGVVGQQPFIDAGDEYTYSSGTALDTPVGVMQGQYIMH--DAQGKE-FVVEIEPFR 118

Query: 309 LSI 301
           L++
Sbjct: 119 LAV 121

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>APAG_VIBVU (Q8DED1) Protein apaG|
          Length = 126

 Score = 94.0 bits (232), Expect = 4e-19
 Identities = 52/123 (42%), Positives = 74/123 (60%)
 Frame = -3

Query: 669 DATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTE 490
           D +   I++QV + Y+E +S P   ++ FAY I I N+S  +VQLL R W++TDANG+  
Sbjct: 2   DVSQPRIQIQVHTKYVEEQSNPELARYIFAYIITIKNHSSESVQLLSRRWLITDANGKQI 61

Query: 489 NVWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFS 310
           +V G GVVG+QP I     + YSS   L+TP G M+G + M   D  G   F + I PF 
Sbjct: 62  SVEGDGVVGQQPFIDAGDEYTYSSGTALDTPVGVMQGQYIMH--DAQGKE-FVVEIEPFR 118

Query: 309 LSI 301
           L++
Sbjct: 119 LAV 121

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>APAG_CHRVO (Q7NW07) Protein apaG|
          Length = 126

 Score = 93.6 bits (231), Expect = 6e-19
 Identities = 44/95 (46%), Positives = 59/95 (62%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + VQ    Y+  +S      + FAYR+RITN      QL+ RHWI+TDAN + + V G+G
Sbjct: 8   MEVQAEPQYVAEQSSVANDVYVFAYRVRITNTGSEPAQLISRHWIITDANQQVQEVRGMG 67

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEM 367
           VVGEQP + P   FEYSSA  + TP G M+G ++M
Sbjct: 68  VVGEQPHLDPGQVFEYSSAAHITTPYGSMKGAYQM 102

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>APAG_SALTY (Q56017) Protein apaG (Protein corD)|
          Length = 125

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 50/115 (43%), Positives = 73/115 (63%)
 Frame = -3

Query: 645 VQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVV 466
           +QV+SVYIE++S P   ++ FAY + I N  +  VQLL R+W++T+ +GR   V G GVV
Sbjct: 9   IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNGHGRETEVQGEGVV 68

Query: 465 GEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           G QP I P   ++Y+S   + TP G M+G +EM  ID+ G + F I I  F L++
Sbjct: 69  GVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEM--IDENGDA-FTIDIPVFRLAV 120

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>APAG_XYLFA (Q9PBJ5) Protein apaG|
          Length = 127

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 48/117 (41%), Positives = 69/117 (58%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I V + S +++ +S   +G++ FAY IRI N      +L+ RHW +TDANG+ E V G G
Sbjct: 9   IEVAISSRFLDHQSNRNEGRYVFAYTIRIYNAGNVPARLIARHWQITDANGKVEYVTGEG 68

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           V+GEQP + P   F Y+S   L T  G+M+G ++M   D    + F   IAPF LS+
Sbjct: 69  VIGEQPRLRPGEEFRYTSGVVLGTEQGQMQGHYDMMADD---GTEFTATIAPFVLSV 122

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>APAG_XANCP (Q8PCE4) Protein apaG|
          Length = 127

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 50/117 (42%), Positives = 69/117 (58%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + V+V   ++  +S P +G++ FAY IRI N      +L+ RHW +TDANGRTE V G G
Sbjct: 9   VEVEVSPRFLAHQSTPEEGRYAFAYSIRIQNAGAVPARLIARHWKITDANGRTEQVDGEG 68

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVGEQP + P   F Y+S   L T  G+M+G ++M   D    + F   IA F LS+
Sbjct: 69  VVGEQPRLRPGEAFHYTSGVLLETEQGQMQGYYDMVADD---GTEFTAPIAAFVLSV 122

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>APAG_CAUCR (Q9A655) Protein apaG|
          Length = 140

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 49/125 (39%), Positives = 69/125 (55%)
 Frame = -3

Query: 669 DATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTE 490
           +A T  I V+V   Y    S P +G + ++Y + I N+ +  V L+ R W +TD   R  
Sbjct: 13  EARTRDIVVRVFPTYAAEESSPEQGLYLWSYTVEIENHGEETVTLIARRWTITDGFNRVN 72

Query: 489 NVWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFS 310
            V G GVVGEQP + P+  F Y S CPL TP+G M G ++M  +   G   F++AI  FS
Sbjct: 73  EVEGSGVVGEQPELKPREAFRYVSNCPLPTPSGAMRGSYQM--VTDAG-DLFDVAIPEFS 129

Query: 309 LSILG 295
           L + G
Sbjct: 130 LHLPG 134

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>APAG_PSEAE (Q9I5U6) Protein apaG|
          Length = 126

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 49/119 (41%), Positives = 69/119 (57%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + V+V + Y+  +S P + +F FAY + I N  +   QLL RHWI+TD +GRT+ V G G
Sbjct: 8   VNVRVDTRYLPEQSAPEQNRFAFAYTVTIENQGEVPAQLLSRHWIITDGDGRTQEVRGAG 67

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 295
           VVGEQP+I P     Y+S   L T  G M G ++M   D +    F+ AI  F L++ G
Sbjct: 68  VVGEQPLIAPGAQHTYTSGTVLATRVGSMRGSYQMLGSDGI---AFDAAIPVFRLAVPG 123

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>APAG_XYLFT (Q87C84) Protein apaG|
          Length = 127

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 48/117 (41%), Positives = 69/117 (58%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I V V S +++ +S   +G++ FAY IRI N      +L+ RHW +TDANG+ E V G G
Sbjct: 9   IEVAVSSRFLDQQSNRNEGRYVFAYTIRIYNAGNVPARLIARHWQITDANGKVEYVTGEG 68

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           V+GEQP + P   F Y+S   L T  G+M+G ++M   D    + F   I+PF LS+
Sbjct: 69  VIGEQPRLRPGEEFRYTSGVVLGTEQGQMQGHYDMMADD---GTEFTATISPFVLSV 122

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>APAG_NITEU (Q82UC1) Protein apaG|
          Length = 127

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 47/117 (40%), Positives = 71/117 (60%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I+V+VR++Y+  +S P   ++ FAY I I N    A QL+ RHWI+T  +G T  V G+G
Sbjct: 9   IKVEVRTIYLPDQSDPEAERYVFAYTITINNTGSVASQLVSRHWIITSGDGVTREVRGLG 68

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVGEQP++ P   FEY+S   +++  G M+G ++M   D      F++ I  F LS+
Sbjct: 69  VVGEQPLLKPGETFEYTSGTAISSIAGSMKGSYQMVAED---GFHFSVEIPEFILSV 122

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>APAG_SALTI (Q8Z9J8) Protein apaG (Protein corD)|
          Length = 125

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 49/115 (42%), Positives = 72/115 (62%)
 Frame = -3

Query: 645 VQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVV 466
           +QV+SVYIE++S P   ++ FAY + I N  +  VQLL R+W++T+ +GR   V G GVV
Sbjct: 9   IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNGHGRETEVQGKGVV 68

Query: 465 GEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           G QP I P   ++Y+    + TP G M+G +EM  ID+ G + F I I  F L++
Sbjct: 69  GVQPRIAPGEEYQYTGGAVIETPLGTMQGHYEM--IDENGDA-FTIDIPVFRLAV 120

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>APAG_XANAC (Q8PP26) Protein apaG|
          Length = 127

 Score = 90.1 bits (222), Expect = 6e-18
 Identities = 49/117 (41%), Positives = 68/117 (58%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + V+V   ++  +S P +G++ FAY IRI N      +L+ RHW +TD NGRTE V G G
Sbjct: 9   VEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEG 68

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVGEQP + P   F Y+S   L T  G+M+G ++M   D    + F   IA F LS+
Sbjct: 69  VVGEQPWLRPGEAFHYTSGVLLETEQGQMQGHYDMVADD---GTEFIAPIAAFVLSV 122

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>APAG_PSEPK (Q88QT7) Protein apaG|
          Length = 126

 Score = 89.7 bits (221), Expect = 8e-18
 Identities = 47/119 (39%), Positives = 68/119 (57%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I V V + Y++ +S P   +F FAY I + NN   + +LL RHW++T+ +G  E V G G
Sbjct: 8   IDVSVVTRYLKEQSDPENSRFAFAYTITVQNNGSLSAKLLSRHWLITNGDGEVEEVRGAG 67

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 295
           VVG+QP I P     YSS   ++T  G M+G ++M   D      F+  IAPF L++ G
Sbjct: 68  VVGQQPNIDPGQSHTYSSGAVISTRVGTMQGSYQMFAED---GKRFDAEIAPFRLAVPG 123

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>APAG_PSESM (Q88A47) Protein apaG|
          Length = 126

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 46/119 (38%), Positives = 67/119 (56%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + V V + ++  +SQP + +F FAY I + NN +   +LL RHWI+TD +G  E V G G
Sbjct: 8   VDVSVVTRFLAEQSQPEQNRFAFAYTITVHNNGELPAKLLSRHWIITDGDGHVEEVRGEG 67

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 295
           VVG+QP+I       YSS   + T  G M+G ++M   D      F+  I PF L++ G
Sbjct: 68  VVGQQPLIKVGQSHTYSSGTVMTTQVGNMQGSYQMLAED---GKRFDAVIEPFRLAVPG 123

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>APAG_RALSO (Q8XVF3) Protein apaG|
          Length = 124

 Score = 86.7 bits (213), Expect = 7e-17
 Identities = 39/93 (41%), Positives = 59/93 (63%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           + VQVR+ Y+  +S+P + ++ FAY I I N  +   QL+ RHW++TDA    + V G+G
Sbjct: 6   LTVQVRTRYLPEQSEPSQDQYAFAYTITIRNTGEVPSQLVSRHWVITDAESHVQEVAGLG 65

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDF 373
           VVG QP++ P   FEY+S   + TP G M G++
Sbjct: 66  VVGHQPLLPPGESFEYTSWATIKTPVGTMRGEY 98

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>APAG_PHOPR (Q6LV42) Protein apaG|
          Length = 127

 Score = 83.2 bits (204), Expect = 8e-16
 Identities = 45/117 (38%), Positives = 68/117 (58%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I+  V + YIE +S+P   ++ F+Y I I N  + + +LL R+W++TDANG+   + G G
Sbjct: 9   IKCNVVTHYIEEQSEPNNQRYVFSYTITIRNLGKGSAKLLSRYWLITDANGKRLVIEGEG 68

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 301
           VVGEQP I     + Y+S   + TP G M+G + M   D     TF   ++PF L+I
Sbjct: 69  VVGEQPEIKMNEEYTYTSGTIIETPLGVMQGHYVMGTED---GETFKAEVSPFRLAI 122

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>FBX3_HUMAN (Q9UK99) F-box only protein 3|
          Length = 471

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNS----QRAVQLLRRHWIVTDANG 499
           ATT  I V V + ++   S      +FF YRIRI  +     ++A QL  R+W +T+A G
Sbjct: 279 ATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKG 338

Query: 498 RTENVWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIA 319
             E V G GVVGE P+I P   +EY+S    +T +G MEG +   H        FN+AI 
Sbjct: 339 DVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTF-HFLYFKDKIFNVAIP 397

Query: 318 PFSLS 304
            F ++
Sbjct: 398 RFHMA 402

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>FBX3_MOUSE (Q9DC63) F-box only protein 3|
          Length = 480

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
 Frame = -3

Query: 666 ATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNS----QRAVQLLRRHWIVTDANG 499
           ATT  I V V + ++   S      +FF YRIRI  +     ++A QL  R+W +T+A G
Sbjct: 279 ATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSRDALPEKACQLDSRYWRITNAKG 338

Query: 498 RTENVWGVGVVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIA 319
             E V G GVVGE P+I P   +EY+S    +T +G MEG +   H        FN+AI 
Sbjct: 339 DVEEVQGPGVVGEFPIISPGRIYEYTSCTTFSTTSGYMEGYYTF-HFLYFKDKVFNVAIP 397

Query: 318 PFSLS 304
            F ++
Sbjct: 398 RFHMA 402

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>PDIP2_MOUSE (Q91VA6) Polymerase delta-interacting protein 2|
          Length = 368

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 47/130 (36%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
 Frame = -3

Query: 663 TTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENV 484
           TT  IRV V   Y+  R       +++ Y IR+ N     VQL  RHW +   +G  E V
Sbjct: 237 TTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETV 296

Query: 483 WGVGVVGEQPVIF-PKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
            G GVVG +PV+   +  F+YSS   L   +G M G F  +  D    S F++ I PFSL
Sbjct: 297 RGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPD---GSHFDVRIPPFSL 353

Query: 306 SILGDDNDAP 277
               D+   P
Sbjct: 354 ESNKDEKTPP 363

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>PDIP2_HUMAN (Q9Y2S7) Polymerase delta-interacting protein 2 (38 kDa DNA|
           polymerase delta interaction protein) (p38)
          Length = 368

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 47/130 (36%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
 Frame = -3

Query: 663 TTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENV 484
           TT  IRV V   Y+  R       +++ Y IR+ N     VQL  RHW +   +G  E V
Sbjct: 237 TTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETV 296

Query: 483 WGVGVVGEQPVIF-PKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 307
            G GVVG +PV+   +  F+YSS   L   +G M G F  +  D    S F++ I PFSL
Sbjct: 297 RGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPD---GSHFDVRIPPFSL 353

Query: 306 SILGDDNDAP 277
               D+   P
Sbjct: 354 ESNKDEKTPP 363

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>APAG_DEIRA (Q9RXS8) Protein apaG|
          Length = 128

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 43/123 (34%), Positives = 65/123 (52%)
 Frame = -3

Query: 651 IRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVG 472
           I V V+  ++ ++S P +    FAY I I NN+  + +LL RHW +T  +G+   V G G
Sbjct: 7   ITVSVQVHHLPAQSTPQRQ--LFAYFITIENNTDDSWKLLSRHWTITSGDGQQFTVEGEG 64

Query: 471 VVGEQPVIFPKTGFEYSSACPLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILGD 292
           VVGEQP++ P   + Y+S   ++   GRMEG + M         T  + I PF L I  +
Sbjct: 65  VVGEQPLLAPGAQYTYNSFVTVDALPGRMEGHYVM---GDAWGQTAQVPIPPFRLDIAPE 121

Query: 291 DND 283
             +
Sbjct: 122 SGE 124

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>DPOL_THEAG (O33845) DNA polymerase (EC 2.7.7.7) (Pol Tfu) [Contains: Tag pol-1|
            intein (Tsp-TY pol-1) (Intein I); Tag pol-2 intein
            (Tsp-TY pol-2) (Intein II); Tag pol-3 intein (Tsp-TY
            pol-3) (Intein III)]
          Length = 1829

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 582  AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPK 439
            AY + +  NS R + + R H + T  NG+ + +WG  V     +I PK
Sbjct: 933  AYEVEL--NSGRKIHITRGHSLFTIRNGKIKEIWGEEVKVGDLIIVPK 978

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>AMID_STRR6 (P0A4N0) Oligopeptide transport system permease protein amiD|
          Length = 308

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 684 LKCSSDATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDA 505
           +K  S    LGI V   ++ + S   P+  KF F    ++ + S R ++    HW  TD+
Sbjct: 38  MKKKSTVVMLGILV---AIILISFIYPMFSKFDFNDVSKVNDFSVRYIKPNAEHWFGTDS 94

Query: 504 NGRT--ENVW 481
           NG++  + VW
Sbjct: 95  NGKSLFDGVW 104

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>AMID_STRPN (P0A4M9) Oligopeptide transport system permease protein amiD|
          Length = 308

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 684 LKCSSDATTLGIRVQVRSVYIESRSQPLKGKFFFAYRIRITNNSQRAVQLLRRHWIVTDA 505
           +K  S    LGI V   ++ + S   P+  KF F    ++ + S R ++    HW  TD+
Sbjct: 38  MKKKSTVVMLGILV---AIILISFIYPMFSKFDFNDVSKVNDFSVRYIKPNAEHWFGTDS 94

Query: 504 NGRT--ENVW 481
           NG++  + VW
Sbjct: 95  NGKSLFDGVW 104

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>RUMB_VIBCH (Q9KL20) 23S rRNA (uracil-5-)-methyltransferase rumB (EC 2.1.1.-)|
           (23S rRNA(M-5-U747)-methyltransferase)
          Length = 375

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 439 LWEYYRLLSHYTNTPNILCPSIRIGDNPVSSEKLYSTLR 555
           L E   LL H+ + P ++ P      NP  +E+LY+T R
Sbjct: 188 LTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATAR 226


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,751,959
Number of Sequences: 219361
Number of extensions: 2459360
Number of successful extensions: 6957
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 6685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6951
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

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