>UL52_HHV6U (P52467) DNA helicase/primase complex protein|
          Length = 860

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 10  ILXKMPKRKQFADITCLKRLRNLHPNTSFNRHPNTSFNRHRTSNSATATFKM 165
           I  K   RK FAD +   R +NL     F +H +T  N  R S+  T TF++
Sbjct: 200 ITLKSKFRKLFADFSTYARQKNLRDKEEF-KHLDTQINLFRKSSHLTNTFRV 250

>UL52_HHV6Z (P52540) DNA helicase/primase complex protein|
          Length = 860

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 10  ILXKMPKRKQFADITCLKRLRNLHPNTSFNRHPNTSFNRHRTSNSATATFKM 165
           I  K   RK FAD     R +NL     F ++ +T  N  R S+  T TF++
Sbjct: 200 ITLKSKFRKLFADFATYARQKNLRDKEEF-KYLDTQINLFRKSSHLTNTFRV 250

>YKD1_YEAST (P36098) Hypothetical 15.6 kDa protein in IXR1-TFA1 intergenic|
           region
          Length = 137

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 19  KMPKRKQFADITCLKRLRNLHPNTSFNRHPNTSFNRHRTSNSAT 150
           K  K+K+   + C   L  LHP+ + N  P  +   +R+++S+T
Sbjct: 59  KEKKKKKVRKVRCASPLLLLHPDITPNTKPRAAVVSNRSTHSST 102

>PUPB_PSEPU (P38047) Ferric-pseudobactin BN7/BN8 receptor precursor|
          Length = 809

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 22  MPKRKQFADITCLKRLRNLHPNTSFNRHPNTSF 120
           +P R    + T LKR  N  P+ S+N H  TSF
Sbjct: 367 LPTRFSTGERTNLKRSLNAAPDWSYNDHEQTSF 399

>RGYR2_SULSO (Q97ZF5) Reverse gyrase 2 [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1166

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 201 RVLDCKAVFWSCHLECCSCGIGGSMSVETSIGMSVETSIGM 79
           + LDC  +F S   +C  CG     S +T+I +  E ++ +
Sbjct: 664 KCLDCNKIFSSASDKCPYCGSANLQSAQTTINLLRELALSV 704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,672,712
Number of Sequences: 219361
Number of extensions: 551752
Number of successful extensions: 1794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)