ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdj06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY522625.1| Oreochromis mossambicus nascent polypeptide-assoc... 50 0.004
2gb|AY168640.1| Oreochromis niloticus nascent polypeptide-associa... 50 0.004
3gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 geno... 46 0.058
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.058
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.058
6ref|NM_190087.1| Oryza sativa (japonica cultivar-group), predic... 44 0.23
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
8dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
9dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
10dbj|AK109341.2| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.23
11dbj|AK101971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.23
12dbj|AK070627.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.23
13ref|XM_418516.1| PREDICTED: Gallus gallus similar to KIAA0363 (L... 42 0.90
14gb|AC154213.3| Mus musculus BAC clone RP24-120I12 from chromosom... 42 0.90
15emb|AL845306.9| Zebrafish DNA sequence from clone DKEY-217M5 in ... 42 0.90
16gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, com... 40 3.6
17ref|XM_420962.1| PREDICTED: Gallus gallus TEA domain family memb... 40 3.6
18gb|AC125189.4| Mus musculus BAC clone RP23-280K1 from chromosome... 40 3.6
19gb|AC116450.17| Mus musculus chromosome 7, clone RP24-249O20, co... 40 3.6
20gb|AC151988.3| Mus musculus BAC clone RP23-362F11 from chromosom... 40 3.6
21gb|AC133951.3| Mus musculus BAC clone RP23-82H2 from chromosome ... 40 3.6
22gb|AY231744.1| Drosophila yakuba clone yak-em_Nacalpha mRNA sequ... 40 3.6
23gb|AC117670.15| Mus musculus chromosome 7, clone RP23-383P11, co... 40 3.6
24emb|AL049843.18|HSJ392M17 Human DNA sequence from clone RP3-392M... 40 3.6
25gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, com... 40 3.6
26gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, com... 40 3.6
27emb|AL691494.15| Mouse DNA sequence from clone RP23-294J14 on ch... 40 3.6
28gb|AC161002.2| Mus musculus BAC clone RP23-6N4 from chromosome 7... 40 3.6
29gb|AC150900.5| Mus musculus BAC clone RP23-145O23 from chromosom... 40 3.6
30emb|BX931451.1| Gallus gallus finished cDNA, clone ChEST332b16 40 3.6
31gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, co... 40 3.6
32emb|AL772276.15| Mouse DNA sequence from clone RP23-335F19 on ch... 40 3.6
33gb|AC168909.4| Mus musculus BAC clone RP23-248K5 from chromosome... 40 3.6
34emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chr... 40 3.6
35gb|AC171240.3| Mus musculus BAC clone RP24-163J14 from chromosom... 40 3.6
36gb|AC171196.1| Mus musculus BAC clone RP23-182D23 from chromosom... 40 3.6
37gb|AC168854.4| Mus musculus BAC clone RP23-170J16 from chromosom... 40 3.6
38emb|AL772328.13| Mouse DNA sequence from clone RP23-270A19 on ch... 40 3.6
39gb|AC164312.3| Mus musculus BAC clone RP23-88M21 from chromosome... 40 3.6 
>gb|AY522625.1| Oreochromis mossambicus nascent polypeptide-associated complex
           alpha polypeptide-like mRNA, partial sequence
          Length = 461

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 243 gtcaactccatgatggcactgacgatgtc 271
           |||||||||||||||||| ||||||||||
Sbjct: 348 gtcaactccatgatggcattgacgatgtc 320
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>gb|AY168640.1| Oreochromis niloticus nascent polypeptide-associated complex alpha
           polypeptide (naca) mRNA, complete cds
          Length = 808

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 243 gtcaactccatgatggcactgacgatgtc 271
           |||||||||||||||||| ||||||||||
Sbjct: 677 gtcaactccatgatggcattgacgatgtc 649
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>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
              sequence
          Length = 178692

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 134    cctccaattccgcaactgcaaca 156
              |||||||||||||||||||||||
Sbjct: 137545 cctccaattccgcaactgcaaca 137567
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 134      cctccaattccgcaactgcaaca 156
                |||||||||||||||||||||||
Sbjct: 17537086 cctccaattccgcaactgcaaca 17537064
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 134      cctccaattccgcaactgcaaca 156
                |||||||||||||||||||||||
Sbjct: 17546126 cctccaattccgcaactgcaaca 17546104
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>ref|NM_190087.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 609

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 236 ctagttagtcaactccatgatggcactgacgatgtcac 273
           |||||| |||| ||||||||||||| |||| |||||||
Sbjct: 609 ctagttcgtcagctccatgatggcagtgacaatgtcac 572
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 236      ctagttagtcaactccatgatggcactgacgatgtcac 273
                |||||| |||| ||||||||||||| |||| |||||||
Sbjct: 41209147 ctagttcgtcagctccatgatggcagtgacaatgtcac 41209110
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>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1150F11
          Length = 130355

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 236   ctagttagtcaactccatgatggcactgacgatgtcac 273
             |||||| |||| ||||||||||||| |||| |||||||
Sbjct: 26062 ctagttcgtcagctccatgatggcagtgacaatgtcac 26025
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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504E02
          Length = 137468

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 236    ctagttagtcaactccatgatggcactgacgatgtcac 273
              |||||| |||| ||||||||||||| |||| |||||||
Sbjct: 106202 ctagttcgtcagctccatgatggcagtgacaatgtcac 106165
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>dbj|AK109341.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F04, full
           insert sequence
          Length = 909

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 236 ctagttagtcaactccatgatggcactgacgatgtcac 273
           |||||| |||| ||||||||||||| |||| |||||||
Sbjct: 721 ctagttcgtcagctccatgatggcagtgacaatgtcac 684
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>dbj|AK101971.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076L24, full
           insert sequence
          Length = 976

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 236 ctagttagtcaactccatgatggcactgacgatgtcac 273
           |||||| |||| ||||||||||||| |||| |||||||
Sbjct: 700 ctagttcgtcagctccatgatggcagtgacaatgtcac 663
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>dbj|AK070627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055N09, full
            insert sequence
          Length = 3171

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 236  ctagttagtcaactccatgatggcactgacgatgtcac 273
            |||||| |||| ||||||||||||| |||| |||||||
Sbjct: 2979 ctagttcgtcagctccatgatggcagtgacaatgtcac 2942
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>ref|XM_418516.1| PREDICTED: Gallus gallus similar to KIAA0363 (LOC420409), mRNA
          Length = 3051

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 243  gtcaactccatgatggcactgacgatgtc 271
            |||| ||||||||||||| ||||||||||
Sbjct: 2915 gtcagctccatgatggcattgacgatgtc 2887
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>gb|AC154213.3| Mus musculus BAC clone RP24-120I12 from chromosome 14, complete sequence
          Length = 183773

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    ttcaagatgacatgaccaaaa 177
              |||||||||||||||||||||
Sbjct: 118835 ttcaagatgacatgaccaaaa 118855
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>emb|AL845306.9| Zebrafish DNA sequence from clone DKEY-217M5 in linkage group 20,
             complete sequence
          Length = 186675

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 153   aacattcaagatgacatgaccaaaa 177
             ||||||||| |||||||||||||||
Sbjct: 73698 aacattcaacatgacatgaccaaaa 73674
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>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 52273 gcccaagagaaagcagtttg 52254
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>ref|XM_420962.1| PREDICTED: Gallus gallus TEA domain family member 1 (TEAD1), mRNA
          Length = 1554

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 147  aactgcaacattcaagatga 166
            ||||||||||||||||||||
Sbjct: 1156 aactgcaacattcaagatga 1175
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>gb|AC125189.4| Mus musculus BAC clone RP23-280K1 from chromosome 7, complete sequence
          Length = 192628

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gcccaagagaaagcagtttg 43
              ||||||||||||||||||||
Sbjct: 168903 gcccaagagaaagcagtttg 168922
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>gb|AC116450.17| Mus musculus chromosome 7, clone RP24-249O20, complete sequence
          Length = 142066

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gcccaagagaaagcagtttg 43
              ||||||||||||||||||||
Sbjct: 138595 gcccaagagaaagcagtttg 138614
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>gb|AC151988.3| Mus musculus BAC clone RP23-362F11 from chromosome 7, complete sequence
          Length = 196173

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 24385 gcccaagagaaagcagtttg 24404
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>gb|AC133951.3| Mus musculus BAC clone RP23-82H2 from chromosome 7, complete sequence
          Length = 176364

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gcccaagagaaagcagtttg 43
              ||||||||||||||||||||
Sbjct: 113695 gcccaagagaaagcagtttg 113714
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>gb|AY231744.1| Drosophila yakuba clone yak-em_Nacalpha mRNA sequence
          Length = 198

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 241 tagtcaactccatgatggcactgacgatgtca 272
           |||||| ||||||||||||  |||||||||||
Sbjct: 193 tagtcagctccatgatggcgttgacgatgtca 162
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>gb|AC117670.15| Mus musculus chromosome 7, clone RP23-383P11, complete sequence
          Length = 219661

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gcccaagagaaagcagtttg 43
              ||||||||||||||||||||
Sbjct: 130660 gcccaagagaaagcagtttg 130641
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>emb|AL049843.18|HSJ392M17 Human DNA sequence from clone RP3-392M17 on chromosome 6p12.3-21.2
             Contains an ATPase H+ transporting lysosomal (ATP6C)
             pseudogene, the RDS gene for retinal degeneration slow
             (retinitis pigmentosa 7), the 3' end of the UBR2 gene for
             ubiquitin protein ligase E3 component n-recognin 2 and a
             CpG island, complete sequence
          Length = 110900

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    tgcccaagagaaagcagttt 42
             ||||||||||||||||||||
Sbjct: 96031 tgcccaagagaaagcagttt 96050
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>gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, complete sequence
          Length = 142444

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 79391 gcccaagagaaagcagtttg 79372
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>gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, complete sequence
          Length = 164489

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 94148 gcccaagagaaagcagtttg 94167
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>emb|AL691494.15| Mouse DNA sequence from clone RP23-294J14 on chromosome 11 Contains the
             5' end of the Hlf gene for hepatic leukemia factor,
             complete sequence
          Length = 57014

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 40169 gcccaagagaaagcagtttg 40188
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>gb|AC161002.2| Mus musculus BAC clone RP23-6N4 from chromosome 7, complete sequence
          Length = 182230

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 67045 gcccaagagaaagcagtttg 67064
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>gb|AC150900.5| Mus musculus BAC clone RP23-145O23 from chromosome 7, complete sequence
          Length = 211722

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gcccaagagaaagcagtttg 43
              ||||||||||||||||||||
Sbjct: 129182 gcccaagagaaagcagtttg 129201
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>emb|BX931451.1| Gallus gallus finished cDNA, clone ChEST332b16
          Length = 1511

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 aactgcaacattcaagatga 166
           ||||||||||||||||||||
Sbjct: 544 aactgcaacattcaagatga 563
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>gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, complete sequence
          Length = 154308

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gcccaagagaaagcagtttg 43
              ||||||||||||||||||||
Sbjct: 118569 gcccaagagaaagcagtttg 118550
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>emb|AL772276.15| Mouse DNA sequence from clone RP23-335F19 on chromosome 4, complete
             sequence
          Length = 192682

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 89905 gcccaagagaaagcagtttg 89924
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>gb|AC168909.4| Mus musculus BAC clone RP23-248K5 from chromosome 7, complete sequence
          Length = 181751

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 64533 gcccaagagaaagcagtttg 64514
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>emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chromosome 4, complete
             sequence
          Length = 197911

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 58288 gcccaagagaaagcagtttg 58269
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>gb|AC171240.3| Mus musculus BAC clone RP24-163J14 from chromosome 7, complete sequence
          Length = 180133

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 90562 gcccaagagaaagcagtttg 90543
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>gb|AC171196.1| Mus musculus BAC clone RP23-182D23 from chromosome 7, complete sequence
          Length = 228024

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 89028 gcccaagagaaagcagtttg 89009
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>gb|AC168854.4| Mus musculus BAC clone RP23-170J16 from chromosome 7, complete sequence
          Length = 226303

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 63103 gcccaagagaaagcagtttg 63122
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>emb|AL772328.13| Mouse DNA sequence from clone RP23-270A19 on chromosome 4, complete
             sequence
          Length = 219095

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcccaagagaaagcagtttg 43
             ||||||||||||||||||||
Sbjct: 67688 gcccaagagaaagcagtttg 67669
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>gb|AC164312.3| Mus musculus BAC clone RP23-88M21 from chromosome 7, complete sequence
          Length = 223232

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gcccaagagaaagcagtttg 43
              ||||||||||||||||||||
Sbjct: 179287 gcccaagagaaagcagtttg 179268


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,901,113
Number of Sequences: 3902068
Number of extensions: 1901113
Number of successful extensions: 30961
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30898
Number of HSP's gapped (non-prelim): 63
length of query: 273
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 251
effective length of database: 17,147,199,772
effective search space: 4303947142772
effective search space used: 4303947142772
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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