ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasdj04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F10, full insert sequence Length = 1818 Score = 262 bits (132), Expect = 1e-66 Identities = 297/352 (84%) Strand = Plus / Minus Query: 278 gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 337 |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| ||||| Sbjct: 1548 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 1489 Query: 338 cttccgcctgaagaagctcgccatcgacaccacaaccactgtgggtactgccgactggcc 397 | ||| | ||| |||||| || || ||||| || ||| ||||||| |||| | ||||| Sbjct: 1488 cctccccaagaataagctctccgtcaacaccgcacccattgtgggttttgccaattggcc 1429 Query: 398 taatctttacttgttttaccttgacatattccacaaaagggagtagaagatgccagcaga 457 | | ||| || |||||||||||||||||||||||| |||| || |||||||||||||| | Sbjct: 1428 tgaccttaacatgttttaccttgacatattccacataaggcagaagaagatgccagcaaa 1369 Query: 458 actgataggcaacaaaaaagcaaaataatctgagtcttccacttccatgtacaagaatca 517 |||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 1368 actgataggcgataaagaagcagaataatctgagtcttccacttccatggacaagaatca 1309 Query: 518 agtccagactgccatcatcatgctgagcttttggtgcaacaagtggagaaaataacccct 577 |||| |||||||| |||| ||||||||||||||| || | || || || | ||| |||| Sbjct: 1308 agtctagactgccgtcattatgctgagcttttggcgcgataaccggtgagagtaatccct 1249 Query: 578 gggcaggcctgcaaaagtggttgcagaccagaatgccaagaaactccccttt 629 | |||||| |||| || || ||||| || | |||||||||||| || ||||| Sbjct: 1248 gtgcaggcttgcagaaatgattgcacacaaaaatgccaagaaattctccttt 1197
>ref|XM_480136.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1818 Score = 254 bits (128), Expect = 3e-64 Identities = 296/352 (84%) Strand = Plus / Minus Query: 278 gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 337 |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| ||||| Sbjct: 1548 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 1489 Query: 338 cttccgcctgaagaagctcgccatcgacaccacaaccactgtgggtactgccgactggcc 397 | || | ||| |||||| || || ||||| || ||| ||||||| |||| | ||||| Sbjct: 1488 cctctccaagaataagctctccgtcaacaccgcacccattgtgggttttgccaattggcc 1429 Query: 398 taatctttacttgttttaccttgacatattccacaaaagggagtagaagatgccagcaga 457 | | ||| || |||||||||||||||||||||||| |||| || |||||||||||||| | Sbjct: 1428 tgaccttaacatgttttaccttgacatattccacataaggcagaagaagatgccagcaaa 1369 Query: 458 actgataggcaacaaaaaagcaaaataatctgagtcttccacttccatgtacaagaatca 517 |||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 1368 actgataggcgataaagaagcagaataatctgagtcttccacttccatggacaagaatca 1309 Query: 518 agtccagactgccatcatcatgctgagcttttggtgcaacaagtggagaaaataacccct 577 |||| |||||||| |||| ||||||||||||||| || | || || || | ||| |||| Sbjct: 1308 agtctagactgccgtcattatgctgagcttttggcgcgataaccggtgagagtaatccct 1249 Query: 578 gggcaggcctgcaaaagtggttgcagaccagaatgccaagaaactccccttt 629 | |||||| |||| || || ||||| || | |||||||||||| || ||||| Sbjct: 1248 gtgcaggcttgcagaaatgattgcacacaaaaatgccaagaaattctccttt 1197
>emb|AJ437338.1|OSA437338 Oryza sativa partial mRNA for putative sphingosine kinase (sphk gene) Length = 580 Score = 250 bits (126), Expect = 5e-63 Identities = 237/274 (86%) Strand = Plus / Minus Query: 278 gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 337 |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| ||||| Sbjct: 337 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 278 Query: 338 cttccgcctgaagaagctcgccatcgacaccacaaccactgtgggtactgccgactggcc 397 | || | ||| |||||| || || ||||| || ||| ||||||| |||| | ||||| Sbjct: 277 cctctccaagaataagctctccgtcaacaccgcacccattgtgggttttgccaattggcc 218 Query: 398 taatctttacttgttttaccttgacatattccacaaaagggagtagaagatgccagcaga 457 | | ||| || |||||||||||||||||||||||| |||| || |||||||||||||| | Sbjct: 217 tgaccttaacatgttttaccttgacatattccacataaggcagaagaagatgccagcaaa 158 Query: 458 actgataggcaacaaaaaagcaaaataatctgagtcttccacttccatgtacaagaatca 517 |||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 157 actgataggcgataaagaagcagaataatctgagtcttccacttccatggacaagaatca 98 Query: 518 agtccagactgccatcatcatgctgagcttttgg 551 |||| |||||||| |||| ||||||||||||||| Sbjct: 97 agtctagactgccgtcattatgctgagcttttgg 64
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 182 bits (92), Expect = 9e-43 Identities = 185/216 (85%) Strand = Plus / Minus Query: 414 taccttgacatattccacaaaagggagtagaagatgccagcagaactgataggcaacaaa 473 ||||||||||||||||||| |||| || |||||||||||||| ||||||||||| | ||| Sbjct: 3015045 taccttgacatattccacataaggcagaagaagatgccagcaaaactgataggcgataaa 3014986 Query: 474 aaagcaaaataatctgagtcttccacttccatgtacaagaatcaagtccagactgccatc 533 ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| || Sbjct: 3014985 gaagcagaataatctgagtcttccacttccatggacaagaatcaagtctagactgccgtc 3014926 Query: 534 atcatgctgagcttttggtgcaacaagtggagaaaataacccctgggcaggcctgcaaaa 593 || ||||||||||||||| || | || || || | ||| ||||| |||||| |||| || Sbjct: 3014925 attatgctgagcttttggcgcgataaccggtgagagtaatccctgtgcaggcttgcagaa 3014866 Query: 594 gtggttgcagaccagaatgccaagaaactccccttt 629 || ||||| || | |||||||||||| || ||||| Sbjct: 3014865 atgattgcacacaaaaatgccaagaaattctccttt 3014830 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 278 gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 337 |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| ||||| Sbjct: 3015372 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 3015313 Query: 338 c 338 | Sbjct: 3015312 c 3015312 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ctgccaagaagaagaggaga 40 |||||||||||||||||||| Sbjct: 1660268 ctgccaagaagaagaggaga 1660287
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 182 bits (92), Expect = 9e-43 Identities = 185/216 (85%) Strand = Plus / Minus Query: 414 taccttgacatattccacaaaagggagtagaagatgccagcagaactgataggcaacaaa 473 ||||||||||||||||||| |||| || |||||||||||||| ||||||||||| | ||| Sbjct: 65768 taccttgacatattccacataaggcagaagaagatgccagcaaaactgataggcgataaa 65709 Query: 474 aaagcaaaataatctgagtcttccacttccatgtacaagaatcaagtccagactgccatc 533 ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| || Sbjct: 65708 gaagcagaataatctgagtcttccacttccatggacaagaatcaagtctagactgccgtc 65649 Query: 534 atcatgctgagcttttggtgcaacaagtggagaaaataacccctgggcaggcctgcaaaa 593 || ||||||||||||||| || | || || || | ||| ||||| |||||| |||| || Sbjct: 65648 attatgctgagcttttggcgcgataaccggtgagagtaatccctgtgcaggcttgcagaa 65589 Query: 594 gtggttgcagaccagaatgccaagaaactccccttt 629 || ||||| || | |||||||||||| || ||||| Sbjct: 65588 atgattgcacacaaaaatgccaagaaattctccttt 65553 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 278 gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 337 |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| ||||| Sbjct: 66095 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 66036 Query: 338 c 338 | Sbjct: 66035 c 66035
>gb|AY112141.1| Zea mays CL24213_1 mRNA sequence Length = 555 Score = 133 bits (67), Expect = 8e-28 Identities = 103/115 (89%) Strand = Plus / Plus Query: 348 aagaagctcgccatcgacaccacaaccactgtgggtactgccgactggcctaatctttac 407 ||||||||| || ||||| ||||||||||||||||||||||| |||||||||| ||| || Sbjct: 368 aagaagctcaccgtcgacgccacaaccactgtgggtactgccaactggcctaaccttcac 427 Query: 408 ttgttttaccttgacatattccacaaaagggagtagaagatgccagcagaactga 462 || ||||| ||||||||||||||| | |||||||||||||||||||||| |||| Sbjct: 428 ttcttttatcttgacatattccacgtaggggagtagaagatgccagcagagctga 482 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 284 ggccaagcaaccggccttgtactgggagcagagagcactgccattc 329 ||||||||| || ||||||| |||| ||||| |||||||||||||| Sbjct: 304 ggccaagcagcctgccttgtgctggaagcagcgagcactgccattc 349
>dbj|AB198064.1| Lotus japonicus LjLCBK1 mRNA for sphingosine kinase, complete cds Length = 2367 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 595 tggttgcagaccagaatgccaagaaact 622 |||||||| ||||||||||||||||||| Sbjct: 2054 tggttgcataccagaatgccaagaaact 2027
>gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromosome 2, complete sequence Length = 180877 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 298 ccttgtactgggagcagagagcactg 323 |||||||||| ||||||||||||||| Sbjct: 109704 ccttgtactgtgagcagagagcactg 109679
>emb|CR392347.5| Zebrafish DNA sequence from clone DKEY-37G12 in linkage group 1, complete sequence Length = 172461 Score = 44.1 bits (22), Expect = 0.56 Identities = 28/30 (93%) Strand = Plus / Plus Query: 142 aaaataatggcagaagacacatttttacag 171 |||||||||| |||| |||||||||||||| Sbjct: 97795 aaaataatggaagaaaacacatttttacag 97824
>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete sequence Length = 206914 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 tggcagaagacacatttttaca 170 |||||||||||||||||||||| Sbjct: 139186 tggcagaagacacatttttaca 139165
>emb|BX324223.23| Zebrafish DNA sequence from clone CH211-217F24 in linkage group 21, complete sequence Length = 223297 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 catttttacagtgcaacaata 181 ||||||||||||||||||||| Sbjct: 12955 catttttacagtgcaacaata 12975
>dbj|AK111445.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B01, full insert sequence Length = 1433 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 344 cctgaagaagctcgccatcgacacc 368 |||||| |||||||||||||||||| Sbjct: 367 cctgaacaagctcgccatcgacacc 391
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 612 gccaagaaactccccttttcctcg 635 |||||||||||| ||||||||||| Sbjct: 547119 gccaagaaactctccttttcctcg 547142
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 ctgaagaagctcgccatcgacacc 368 |||||||||||||||| ||||||| Sbjct: 5019964 ctgaagaagctcgccaccgacacc 5019941
>gb|AC150912.3| Pan troglodytes BAC clone CH251-18B3 from chromosome 7, complete sequence Length = 170021 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgtactgggagcagagagca 320 |||||||||||||||||||| Sbjct: 73118 tgtactgggagcagagagca 73137
>gb|AC150554.1| Drosophila melanogaster clone BACR21O10, complete sequence Length = 193926 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 aagaatcaagtccagactgc 529 |||||||||||||||||||| Sbjct: 73515 aagaatcaagtccagactgc 73496
>gb|AC135378.2| Mus musculus BAC clone RP24-284L24 from chromosome 16, complete sequence Length = 157430 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 acaaaaaagcaaaataatct 488 |||||||||||||||||||| Sbjct: 79665 acaaaaaagcaaaataatct 79646
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 acgaaaatgggtgaaaataa 148 |||||||||||||||||||| Sbjct: 3528225 acgaaaatgggtgaaaataa 3528244
>gb|AC161169.10| Mus musculus chromosome 5, clone RP24-102B13, complete sequence Length = 239061 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ctgggagcagagagcactgc 324 |||||||||||||||||||| Sbjct: 2714 ctgggagcagagagcactgc 2733
>gb|AC148932.3| Pan troglodytes BAC clone CH251-571G8 from chromosome 7, complete sequence Length = 232604 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgtactgggagcagagagca 320 |||||||||||||||||||| Sbjct: 214270 tgtactgggagcagagagca 214289
>ref|XM_566584.1| Cryptococcus neoformans var. neoformans JEC21 ferric reductase transmembrane component (CNA02040) partial mRNA Length = 2049 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 612 gccaagaaactccccttttcctcg 635 |||||||||||| ||||||||||| Sbjct: 1282 gccaagaaactctccttttcctcg 1259
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 gcctgaagaagctcgccatcgaca 366 ||||||||||||||| |||||||| Sbjct: 3364747 gcctgaagaagctcggcatcgaca 3364770
>emb|X77867.1|YEHEMSTUV Y.enterocolitica hemS, hemT, hemU and hemV genes Length = 3901 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gggtgaaaataatggcagaa 156 |||||||||||||||||||| Sbjct: 2419 gggtgaaaataatggcagaa 2400
>emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in linkage group 8, complete sequence Length = 182233 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaggagacctcacttt 49 |||||||||||||||||||| Sbjct: 77156 agaagaggagacctcacttt 77175
>emb|AL138643.1|ATF7M19 Arabidopsis thaliana DNA chromosome 3, BAC clone F7M19 Length = 99291 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gacgaaaatgggtgaaaata 147 |||||||||||||||||||| Sbjct: 18686 gacgaaaatgggtgaaaata 18705
>emb|BX510321.9| Zebrafish DNA sequence from clone CH211-255P13 in linkage group 2, complete sequence Length = 160542 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 caaaaaagcaaaataatctg 489 |||||||||||||||||||| Sbjct: 111904 caaaaaagcaaaataatctg 111923
>gb|AC009835.14| Homo sapiens chromosome 18, clone RP11-413I9, complete sequence Length = 157979 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 acaaaaaagcaaaataatct 488 |||||||||||||||||||| Sbjct: 25475 acaaaaaagcaaaataatct 25456
>gb|AC148835.3| Pan troglodytes BAC clone CH251-25M11 from chromosome 7, complete sequence Length = 154596 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgtactgggagcagagagca 320 |||||||||||||||||||| Sbjct: 73784 tgtactgggagcagagagca 73803
>emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in linkage group 15, complete sequence Length = 192849 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 ttgctaaccacttaatttag 203 |||||||||||||||||||| Sbjct: 19301 ttgctaaccacttaatttag 19320
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 gcctgaagaagctcgccatcgaca 366 ||||||||||||||| |||||||| Sbjct: 2790225 gcctgaagaagctcggcatcgaca 2790202
>gb|AC068339.6| Homo sapiens chromosome 11, clone RP11-328E22, complete sequence Length = 155491 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 agtcacaaacctacttctgt 270 |||||||||||||||||||| Sbjct: 38815 agtcacaaacctacttctgt 38796
>gb|AC008216.3|AC008216 Drosophila melanogaster, chromosome 3R, region 97E-97E, BAC clone BACR27C22, complete sequence Length = 179486 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 aagaatcaagtccagactgc 529 |||||||||||||||||||| Sbjct: 48113 aagaatcaagtccagactgc 48094
>gb|AC062020.5| Homo sapiens BAC clone RP11-154O23 from 2, complete sequence Length = 170197 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ccatgtacaagaatcaagtc 521 |||||||||||||||||||| Sbjct: 163063 ccatgtacaagaatcaagtc 163044
>gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, complete sequence Length = 159831 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gactggcctaatctttactt 409 |||||||||||||||||||| Sbjct: 156121 gactggcctaatctttactt 156140
>dbj|AB085700.1| Xenopus laevis xIdax gene for Idax protein, complete cds Length = 850 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tcctgccaagaagaagagga 38 |||||||||||||||||||| Sbjct: 380 tcctgccaagaagaagagga 399
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ctgccaagaagaagaggaga 40 |||||||||||||||||||| Sbjct: 59768 ctgccaagaagaagaggaga 59787
>gb|BC090532.1| Danio rerio cDNA clone IMAGE:7143041 Length = 1295 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 agaagaggagacctcacttt 49 |||||||||||||||||||| Sbjct: 1059 agaagaggagacctcacttt 1040
>emb|CR848789.11| Zebrafish DNA sequence from clone DKEYP-114B4 in linkage group 16, complete sequence Length = 195410 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 caaaaaagcaaaataatctg 489 |||||||||||||||||||| Sbjct: 136806 caaaaaagcaaaataatctg 136787
>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete sequence Length = 222554 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 aagaatcaagtccagactgc 529 |||||||||||||||||||| Sbjct: 72180 aagaatcaagtccagactgc 72161
>dbj|AP003034.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-347E24, complete sequence Length = 158780 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agtcacaaacctacttctgt 270 |||||||||||||||||||| Sbjct: 299 agtcacaaacctacttctgt 318
>emb|AL928876.12| Mouse DNA sequence from clone RP23-236O6 on chromosome 2, complete sequence Length = 201545 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 caacaaaaaagcaaaataat 486 |||||||||||||||||||| Sbjct: 93517 caacaaaaaagcaaaataat 93498
>emb|AL953890.7| Mouse DNA sequence from clone RP23-321B3 on chromosome 2, complete sequence Length = 157722 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 tttttacagtgcaacaatac 182 |||||||||||||||||||| Sbjct: 50039 tttttacagtgcaacaatac 50020
>emb|AL713989.20| Mouse DNA sequence from clone RP23-5I4 on chromosome 5, complete sequence Length = 215210 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ctgggagcagagagcactgc 324 |||||||||||||||||||| Sbjct: 107716 ctgggagcagagagcactgc 107735
>dbj|AP000546.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:c18E3 Length = 39984 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gactggcctaatctttactt 409 |||||||||||||||||||| Sbjct: 33056 gactggcctaatctttactt 33075 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,711,932 Number of Sequences: 3902068 Number of extensions: 6711932 Number of successful extensions: 154109 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153851 Number of HSP's gapped (non-prelim): 252 length of query: 641 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 618 effective length of database: 17,143,297,704 effective search space: 10594557981072 effective search space used: 10594557981072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
