ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdi23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK064983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C13, full insert sequence Length = 2881 Score = 547 bits (276), Expect = e-152 Identities = 429/480 (89%) Strand = Plus / Minus Query: 231 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 290 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 2610 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 2551 Query: 291 agttgaatgaaccgcaaagcatccttccggatgctgggggttccttcaaacaaggaagct 350 ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 2550 agttgaatgaaccgcaaggcatctttccggatactgggggttccttcaaataaggaagct 2491 Query: 351 agactttccggagcaacaataaagacatttgccatgattccaagcagttcaaacttctca 410 |||||||| |||||||| || || ||||| |||||||||||||||||||||||||| ||| Sbjct: 2490 agactttcaggagcaacgatgaatacattggccatgattccaagcagttcaaacttttca 2431 Query: 411 tctatggagggggcattgaagctacggacaaactccccatactcagtaatgtcacgtttc 470 ||||| || ||||||||||||||||| || || ||||| |||||||| || ||||||||| Sbjct: 2430 tctatcgatggggcattgaagctacgaacgaattccccgtactcagtgatatcacgtttc 2371 Query: 471 aaccgtagcccaccactcggactaaacgtgaacttttgccaatgattaagaaggcccttg 530 | ||||| ||||||||| |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 2370 agccgtaacccaccactgggactaaatgtgaacttctgccaatgattgagtagcccctta 2311 Query: 531 tgcatgcggtttcccaattcagtcaaaaaggactgtttgtttagaccttctagggcactg 590 |||| ||| ||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 2310 tgcaagcgatttcccagctcagtcaaaaaggactgtttattgagaccttctagagcactg 2251 Query: 591 aatgcaacctcgagaacacgagaaaggtaggctacaattcttatgcaagcattcgtaggc 650 ||||||||||||||||||||||| || |||||||||||||||||||||||||| || || Sbjct: 2250 aatgcaacctcgagaacacgagatagataggctacaattcttatgcaagcattggttggt 2191 Query: 651 cgatggtctggtgcagctccatcatctggtgaccgataatctgtagctttctgttctgaa 710 ||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 2190 cgatgatccggtgcagctccatcatctggtgttcgataatctgtagccttctgttctgaa 2131
>dbj|AK062178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D06, full insert sequence Length = 1535 Score = 547 bits (276), Expect = e-152 Identities = 429/480 (89%) Strand = Plus / Minus Query: 231 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 290 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 1257 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 1198 Query: 291 agttgaatgaaccgcaaagcatccttccggatgctgggggttccttcaaacaaggaagct 350 ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 1197 agttgaatgaaccgcaaggcatctttccggatactgggggttccttcaaataaggaagct 1138 Query: 351 agactttccggagcaacaataaagacatttgccatgattccaagcagttcaaacttctca 410 |||||||| |||||||| || || ||||| |||||||||||||||||||||||||| ||| Sbjct: 1137 agactttcaggagcaacgatgaatacattggccatgattccaagcagttcaaacttttca 1078 Query: 411 tctatggagggggcattgaagctacggacaaactccccatactcagtaatgtcacgtttc 470 ||||| || ||||||||||||||||| || || ||||| |||||||| || ||||||||| Sbjct: 1077 tctatcgatggggcattgaagctacgaacgaattccccgtactcagtgatatcacgtttc 1018 Query: 471 aaccgtagcccaccactcggactaaacgtgaacttttgccaatgattaagaaggcccttg 530 | ||||| ||||||||| |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 1017 agccgtaacccaccactgggactaaatgtgaacttctgccaatgattgagtagcccctta 958 Query: 531 tgcatgcggtttcccaattcagtcaaaaaggactgtttgtttagaccttctagggcactg 590 |||| ||| ||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 957 tgcaagcgatttcccagctcagtcaaaaaggactgtttattgagaccttctagagcactg 898 Query: 591 aatgcaacctcgagaacacgagaaaggtaggctacaattcttatgcaagcattcgtaggc 650 ||||||||||||||||||||||| || |||||||||||||||||||||||||| || || Sbjct: 897 aatgcaacctcgagaacacgagatagataggctacaattcttatgcaagcattggttggt 838 Query: 651 cgatggtctggtgcagctccatcatctggtgaccgataatctgtagctttctgttctgaa 710 ||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 837 cgatgatccggtgcagctccatcatctggtgttcgataatctgtagccttctgttctgaa 778
>gb|AY110699.1| Zea mays CL19324_1 mRNA sequence Length = 967 Score = 303 bits (153), Expect = 4e-79 Identities = 300/354 (84%) Strand = Plus / Plus Query: 309 gcatccttccggatgctgggggttccttcaaacaaggaagctagactttccggagcaaca 368 |||||||| |||||||| |||||||||||| ||| |||| |||||| ||||||||| Sbjct: 358 gcatcctttcggatgctnnnnnttccttcaaacagggatgctaaactttctggagcaaca 417 Query: 369 ataaagacatttgccatgattccaagcagttcaaacttctcatctatggagggggcattg 428 || ||||| || |||| ||||| | |||||| ||||||||||||||||| ||||| Sbjct: 418 atgaagacgttcgccacaattcccaacagttcgaacttctcatctatggannnnncattg 477 Query: 429 aagctacggacaaactccccatactcagtaatgtcacgtttcaaccgtagcccaccactc 488 |||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||| Sbjct: 478 aagctacgaacgaaatccccatattcagttatgtcacgtttcaaccgtaggccaccactg 537 Query: 489 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttcccaat 548 |||||||| |||||||| |||||||||||||| || ||||| |||| ||| ||||||| Sbjct: 538 ggactaaatgtgaacttctgccaatgattaagcagccccttatgcaagcgatttcccagc 597 Query: 549 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaaca 608 |||||| |||||||||||| || ||||| |||||||||||||||||||| |||||| Sbjct: 598 tcagtcnnnnnggactgtttgttgaggccttcaagggcactgaatgcaacctcaagaaca 657 Query: 609 cgagaaaggtaggctacaattcttatgcaagcattcgtaggccgatggtctggt 662 ||||| || ||||||||||||||||| |||||||| || |||||||| |||||| Sbjct: 658 cgagagagataggctacaattcttatacaagcattagttggccgatgatctggt 711
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 549 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaaca 608 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 7630808 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaaca 7630867 Query: 609 cgagaaaggtaggctacaattct 631 ||||| || |||||||||||||| Sbjct: 7630868 cgagatagataggctacaattct 7630890 Score = 113 bits (57), Expect = 8e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 387 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 446 |||||||||||||||||||| |||||||| || ||||||||||||||||| || || ||| Sbjct: 7630216 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 7630275 Query: 447 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 487 || |||||||| || |||||||||| ||||| ||||||||| Sbjct: 7630276 ccgtactcagtgatatcacgtttcagccgtaacccaccact 7630316 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 301 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 360 ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 7630050 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 7630109 Query: 361 gagcaacaataaagacatttgccatg 386 ||||||| || || ||||| |||||| Sbjct: 7630110 gagcaacgatgaatacattggccatg 7630135 Score = 97.6 bits (49), Expect = 5e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 630 cttatgcaagcattcgtaggccgatggtctggtgcagctccatcatctggtgaccgataa 689 |||||||||||||| || || ||||| || |||||||||||||||||||||| |||||| Sbjct: 7630961 cttatgcaagcattggttggtcgatgatccggtgcagctccatcatctggtgttcgataa 7631020 Query: 690 tctgtagctttctgttctgaa 710 |||||||| |||||||||||| Sbjct: 7631021 tctgtagccttctgttctgaa 7631041 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 231 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 290 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 7629893 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 7629952 Query: 291 agttgaatgaacc 303 ||||||||||||| Sbjct: 7629953 agttgaatgaacc 7629965 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Plus Query: 489 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 545 |||||||| |||||||| ||||||||||| || || ||||| |||| ||| |||||| Sbjct: 7630394 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 7630450
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 549 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaaca 608 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 7630689 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaaca 7630748 Query: 609 cgagaaaggtaggctacaattct 631 ||||| || |||||||||||||| Sbjct: 7630749 cgagatagataggctacaattct 7630771 Score = 113 bits (57), Expect = 8e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 387 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 446 |||||||||||||||||||| |||||||| || ||||||||||||||||| || || ||| Sbjct: 7630097 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 7630156 Query: 447 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 487 || |||||||| || |||||||||| ||||| ||||||||| Sbjct: 7630157 ccgtactcagtgatatcacgtttcagccgtaacccaccact 7630197 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 301 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 360 ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 7629931 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 7629990 Query: 361 gagcaacaataaagacatttgccatg 386 ||||||| || || ||||| |||||| Sbjct: 7629991 gagcaacgatgaatacattggccatg 7630016 Score = 97.6 bits (49), Expect = 5e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 630 cttatgcaagcattcgtaggccgatggtctggtgcagctccatcatctggtgaccgataa 689 |||||||||||||| || || ||||| || |||||||||||||||||||||| |||||| Sbjct: 7630842 cttatgcaagcattggttggtcgatgatccggtgcagctccatcatctggtgttcgataa 7630901 Query: 690 tctgtagctttctgttctgaa 710 |||||||| |||||||||||| Sbjct: 7630902 tctgtagccttctgttctgaa 7630922 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 231 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 290 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 7629774 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 7629833 Query: 291 agttgaatgaacc 303 ||||||||||||| Sbjct: 7629834 agttgaatgaacc 7629846 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Plus Query: 489 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 545 |||||||| |||||||| ||||||||||| || || ||||| |||| ||| |||||| Sbjct: 7630275 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 7630331
>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151024 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 549 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaaca 608 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 18201 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaaca 18260 Query: 609 cgagaaaggtaggctacaattct 631 ||||| || |||||||||||||| Sbjct: 18261 cgagatagataggctacaattct 18283 Score = 113 bits (57), Expect = 8e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 387 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 446 |||||||||||||||||||| |||||||| || ||||||||||||||||| || || ||| Sbjct: 17609 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 17668 Query: 447 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 487 || |||||||| || |||||||||| ||||| ||||||||| Sbjct: 17669 ccgtactcagtgatatcacgtttcagccgtaacccaccact 17709 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 301 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 360 ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 17443 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 17502 Query: 361 gagcaacaataaagacatttgccatg 386 ||||||| || || ||||| |||||| Sbjct: 17503 gagcaacgatgaatacattggccatg 17528 Score = 97.6 bits (49), Expect = 5e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 630 cttatgcaagcattcgtaggccgatggtctggtgcagctccatcatctggtgaccgataa 689 |||||||||||||| || || ||||| || |||||||||||||||||||||| |||||| Sbjct: 18354 cttatgcaagcattggttggtcgatgatccggtgcagctccatcatctggtgttcgataa 18413 Query: 690 tctgtagctttctgttctgaa 710 |||||||| |||||||||||| Sbjct: 18414 tctgtagccttctgttctgaa 18434 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 231 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 290 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 17286 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 17345 Query: 291 agttgaatgaacc 303 ||||||||||||| Sbjct: 17346 agttgaatgaacc 17358 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Plus Query: 489 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 545 |||||||| |||||||| ||||||||||| || || ||||| |||| ||| |||||| Sbjct: 17787 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 17843
>gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete sequence Length = 117225 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 423 gcattgaagctacggacaaactccccatactcagtaatgtcacgtttca 471 |||||||| ||||| |||||||| |||||||||||||||||||| |||| Sbjct: 73050 gcattgaaactacgcacaaactctccatactcagtaatgtcacgcttca 73098 Score = 40.1 bits (20), Expect = 9.7 Identities = 62/76 (81%) Strand = Plus / Plus Query: 309 gcatccttccggatgctgggggttccttcaaacaaggaagctagactttccggagcaaca 368 ||||| ||||| |||||||| || || |||||||| | | ||||| || ||||||||| Sbjct: 72846 gcatctttccgaatgctgggtgtaccctcaaacaaagttgaaagactctcaggagcaaca 72905 Query: 369 ataaagacatttgcca 384 || |||||||| |||| Sbjct: 72906 atgaagacattggcca 72921
>emb|BX927256.13| Zebrafish DNA sequence from clone CH211-272F14 in linkage group 5, complete sequence Length = 130184 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ccttgaagtaaattttattca 236 ||||||||||||||||||||| Sbjct: 55100 ccttgaagtaaattttattca 55080
>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence Length = 156107 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 atttgccatgattccaagcag 397 ||||||||||||||||||||| Sbjct: 57011 atttgccatgattccaagcag 56991
>dbj|BS000180.1| Pan troglodytes chromosome 22 clone:RP43-184I13, map 22, complete sequences Length = 158703 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 aagtaaattttattcagacat 241 ||||||||||||||||||||| Sbjct: 92558 aagtaaattttattcagacat 92538
>gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosome 19, complete sequence Length = 206333 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 573 agaccttctagggcactgaa 592 |||||||||||||||||||| Sbjct: 37105 agaccttctagggcactgaa 37124
>gb|AC130548.3| Mus musculus BAC clone RP24-456F12 from chromosome 5, complete sequence Length = 170929 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 agaaacagaaaaacaaaggg 99 |||||||||||||||||||| Sbjct: 61302 agaaacagaaaaacaaaggg 61321
>gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome 19, complete sequence Length = 165998 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 agaccttctagggcactgaa 592 |||||||||||||||||||| Sbjct: 6792 agaccttctagggcactgaa 6773
>gb|AC135796.25| Medicago truncatula clone mth2-28b18, complete sequence Length = 118959 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 catcgcttgaaaattatcaa 215 |||||||||||||||||||| Sbjct: 94770 catcgcttgaaaattatcaa 94789
>emb|CR352982.1| Gallus gallus finished cDNA, clone ChEST538k24 Length = 875 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atgaaccgcaaagcatcctt 316 |||||||||||||||||||| Sbjct: 420 atgaaccgcaaagcatcctt 401
>gb|AC107078.4| Homo sapiens BAC clone RP11-582N16 from 2, complete sequence Length = 31946 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 cttgaagtaaattttattcagaca 240 |||||||||||| ||||||||||| Sbjct: 25386 cttgaagtaaatattattcagaca 25409
>gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, complete sequence Length = 193466 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 agaaacagaaaaacaaaggg 99 |||||||||||||||||||| Sbjct: 90867 agaaacagaaaaacaaaggg 90848
>gb|AC153893.3| Mus musculus 10 BAC RP23-124O20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228194 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ttgtagtcatccctgagttg 295 |||||||||||||||||||| Sbjct: 173342 ttgtagtcatccctgagttg 173323
>gb|AC161533.22| Mus musculus chromosome 3, clone RP23-55N2, complete sequence Length = 158774 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 caacaataaagacatttgccatga 387 ||||||||||| |||||||||||| Sbjct: 121827 caacaataaaggcatttgccatga 121804
>gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, complete sequence Length = 187001 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 caacaataaagacatttgccatga 387 ||||||||||| |||||||||||| Sbjct: 184463 caacaataaaggcatttgccatga 184486 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,997,982 Number of Sequences: 3902068 Number of extensions: 5997982 Number of successful extensions: 113238 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113124 Number of HSP's gapped (non-prelim): 113 length of query: 710 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 687 effective length of database: 17,143,297,704 effective search space: 11777445522648 effective search space used: 11777445522648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
