ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdi16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KCNQ4_HUMAN (P56696) Potassium voltage-gated channel subfamily K... 31 4.4
2MYO2_YEAST (P19524) Myosin-2 (Class V unconventional myosin MYO2... 30 7.6
3ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-) 30 9.9
4MYO2_SACBA (Q876G9) Myosin-2 (Class V unconventional myosin MYO2... 30 9.9

>KCNQ4_HUMAN (P56696) Potassium voltage-gated channel subfamily KQT member 4|
           (Voltage-gated potassium channel subunit Kv7.4)
           (Potassium channel alpha subunit KvLQT4) (KQT-like 4)
          Length = 695

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 452 PGGW*FSPRVLKFIHTMPCCLWSVLTTEQEGQEL 351
           P GW F   V  F+    C + SVL+T QE QEL
Sbjct: 94  PRGWAFVYHVFIFLLVFSCLVLSVLSTIQEHQEL 127



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>MYO2_YEAST (P19524) Myosin-2 (Class V unconventional myosin MYO2) (Type V|
           myosin heavy chain MYO2) (Myosin V MYO2) (Cell divison
           control protein 66)
          Length = 1574

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 27/109 (24%), Positives = 50/109 (45%)
 Frame = -2

Query: 665 KPHGGNSPRSWFIISVTFLEATSVHMPRNLKP*HSTVAFEFPPQKLMSLIM*QQYMPVLS 486
           KP  G+  +   I  +  + +T+VH  R +KP     A++F    ++S +   +   VL 
Sbjct: 640 KPTLGSMFKQSLIELMNTINSTNVHYIRCIKPNADKEAWQFDNLMVLSQL---RACGVLE 696

Query: 485 KIHATKRSAVVPGGW*FSPRVLKFIHTMPCCLWSVLTTEQEGQELILVS 339
            I  +   A  P  W F   VL++   +P   W ++  ++E  E  ++S
Sbjct: 697 TIRIS--CAGFPSRWTFEEFVLRYYILIPHEQWDLIFKKKETTEEDIIS 743



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>ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)|
          Length = 552

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 30  KGLVKYIKTTTNGKVILQVSAVNSNRLDRLNNHG-PRESKSH 152
           K + + +KTT +G+VIL + AVN+ +L  L+  G   E K H
Sbjct: 235 KNMHQQVKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEH 276



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>MYO2_SACBA (Q876G9) Myosin-2 (Class V unconventional myosin MYO2) (Type V|
           myosin heavy chain MYO2) (Myosin V MYO2)
          Length = 1568

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 27/109 (24%), Positives = 51/109 (46%)
 Frame = -2

Query: 665 KPHGGNSPRSWFIISVTFLEATSVHMPRNLKP*HSTVAFEFPPQKLMSLIM*QQYMPVLS 486
           KP  G+  +   I  ++ + +T+VH  R +KP     A++F    ++S +   +   VL 
Sbjct: 642 KPTLGSMFKQSLIELMSTINSTNVHYIRCIKPNADKEAWQFDNLMVLSQL---RACGVLE 698

Query: 485 KIHATKRSAVVPGGW*FSPRVLKFIHTMPCCLWSVLTTEQEGQELILVS 339
            I  +   A  P  W F   VL++   +P   W ++  ++E  E  ++S
Sbjct: 699 TIRIS--CAGFPSRWTFEEFVLRYYILIPHEEWDLIFQKKETTEDDIIS 745


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,174,161
Number of Sequences: 219361
Number of extensions: 2080328
Number of successful extensions: 4600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4596
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7479594804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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