ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdi16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.041
2gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.041
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.041
4gb|AC004896.1| Homo sapiens PAC clone RP4-811H12 from 7, complet... 46 0.16
5emb|CR932958.2| Medicago truncatula chromosome 5 clone mth2-174i... 46 0.16
6gb|AC123932.4| Mus musculus chromosome 12 clone RP23-310F15, com... 42 2.5
7gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875... 42 2.5
8emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 42 2.5
9emb|AL714011.12| Mouse DNA sequence from clone RP23-380O17 on ch... 42 2.5
10gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, com... 42 2.5
11gb|AC003962.1|AC003962 Homo sapiens chromosome 17, clone HCIT217... 42 2.5
12emb|BX323588.10| Zebrafish DNA sequence from clone DKEY-225F23 i... 42 2.5
13dbj|AB241456.1| Lotus japonicus TINod gene for transcription ini... 42 2.5
14gb|AC154102.15| Mus musculus chromosome 8, clone RP24-186O14, co... 40 9.9
15gb|AY722924.2| Borrelia garinii PBi variable plasmid segment G1M... 40 9.9
16ref|XM_639724.1| Dictyostelium discoideum putative protein tyros... 40 9.9
17ref|XM_639342.1| Dictyostelium discoideum hypothetical protein (... 40 9.9
18ref|XM_630828.1| Dictyostelium discoideum hypothetical protein (... 40 9.9
19gb|AC123645.7| Mus musculus chromosome 15, clone RP23-99N19, com... 40 9.9
20gb|AC159093.4| Mus musculus chromosome 15, clone RP23-117F23, co... 40 9.9
21ref|XM_420709.1| PREDICTED: Gallus gallus similar to sec1 family... 40 9.9
22gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Canc... 40 9.9
23gb|AC115684.2| Dictyostelium discoideum chromosome 2 map 3108975... 40 9.9
24gb|AC117689.11| Mus musculus chromosome 12, clone RP23-446I19, c... 40 9.9
25emb|CT025542.5| Mouse DNA sequence from clone RP24-270A18 on chr... 40 9.9
26gb|AY232265.1| Dictyostelium discoideum putative protein Roco2 (... 40 9.9
27emb|Z78022.1|HS37M17 Human DNA sequence from clone RP1-37M17 on ... 40 9.9
28gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 9.9
29emb|AL358876.11| Human DNA sequence from clone RP11-431K24 on ch... 40 9.9
30emb|AL158015.9| Human DNA sequence from clone RP11-195N11 on chr... 40 9.9
31emb|AL136526.27| Human DNA sequence from clone RP11-151A6 on chr... 40 9.9
32emb|AL121772.19|HSJ965G21 Human DNA sequence from clone RP5-965G... 40 9.9
33emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 9.9
34gb|AC087376.5| Homo sapiens chromosome 11, clone RP11-230O19, co... 40 9.9
35gb|AC099567.2| Homo sapiens chromosome 1 clone RP5-936J12, compl... 40 9.9
36gb|AC008249.14| Homo sapiens 3 BAC RP11-211P13 (Roswell Park Can... 40 9.9
37gb|AC093573.17| Pan troglodytes clone rp43-32j20, complete sequence 40 9.9
38dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 9.9
39gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... 40 9.9
40gb|AC013714.8| Homo sapiens chromosome , clone RP11-22P4, comple... 40 9.9
41gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 9.9
42gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 9.9
43gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 9.9
44gb|AC007308.13| Homo sapiens chromosome 22 clone pac408 map 22q1... 40 9.9
45gb|AC020552.4|AC020552 Homo sapiens BAC clone RP11-431K24 from 1... 40 9.9
46dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
47dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
48gb|AC114398.3| Homo sapiens chromosome 3 clone RP11-495E23, comp... 40 9.9
49gb|AC027220.9| Homo sapiens chromosome 15, clone RP11-731G9, com... 40 9.9
50dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 9.9
51dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 9.9
52dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
53gb|AF146687.1|FRNINE1 Fugu rubripes U2 small nuclear ribonucleop... 40 9.9
54emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 9.9
55dbj|AP001874.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.9
56gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9
57emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb... 40 9.9
58emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa... 40 9.9
59gb|BC037823.1| Homo sapiens chromosome 15 open reading frame 44,... 40 9.9
60emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 9.9
61emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 9.9
62gb|AC027541.12| Homo sapiens chromosome 8, clone RP11-324F11, co... 40 9.9
63gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone... 40 9.9 
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0012L23, complete sequence
          Length = 121659

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 558   cgtggaatgctagggtttaagatt 581
             ||||||||||||||||||||||||
Sbjct: 32458 cgtggaatgctagggtttaagatt 32481
to top
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
              complete sequence
          Length = 148348

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 558    cgtggaatgctagggtttaagatt 581
              ||||||||||||||||||||||||
Sbjct: 127293 cgtggaatgctagggtttaagatt 127316
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 558     cgtggaatgctagggtttaagatt 581
               ||||||||||||||||||||||||
Sbjct: 7172444 cgtggaatgctagggtttaagatt 7172467
to top
>gb|AC004896.1| Homo sapiens PAC clone RP4-811H12 from 7, complete sequence
          Length = 162215

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 520   agagacataagtttctgaggtgg 542
             |||||||||||||||||||||||
Sbjct: 93539 agagacataagtttctgaggtgg 93517
to top
>emb|CR932958.2| Medicago truncatula chromosome 5 clone mth2-174i23, COMPLETE SEQUENCE
          Length = 122746

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 13    acttatatttaaaaatgaaggga 35
             |||||||||||||||||||||||
Sbjct: 39554 acttatatttaaaaatgaaggga 39576
to top
>gb|AC123932.4| Mus musculus chromosome 12 clone RP23-310F15, complete sequence
          Length = 163312

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    atatttaaaaatgaagggact 37
             |||||||||||||||||||||
Sbjct: 14032 atatttaaaaatgaagggact 14052
to top
>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4,
              complete sequence
          Length = 257109

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     ttatatttaaaaatgaaggga 35
              |||||||||||||||||||||
Sbjct: 149481 ttatatttaaaaatgaaggga 149461
to top
>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
             sequence
          Length = 173580

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 36    ctagtaaagtacataaagacaacaa 60
             ||||||||||||||||| |||||||
Sbjct: 11848 ctagtaaagtacataaaaacaacaa 11872
to top
>emb|AL714011.12| Mouse DNA sequence from clone RP23-380O17 on chromosome 4 Contains a CpG
              island, complete sequence
          Length = 166093

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 576    aagattcctgggcatgtggac 596
              |||||||||||||||||||||
Sbjct: 108099 aagattcctgggcatgtggac 108079
to top
>gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, complete sequence
          Length = 163418

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 54     acaacaacaaatggaaaagta 74
              |||||||||||||||||||||
Sbjct: 149058 acaacaacaaatggaaaagta 149038
to top
>gb|AC003962.1|AC003962 Homo sapiens chromosome 17, clone HCIT217L10, complete sequence
          Length = 101370

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    acaacaacaaatggaaaagta 74
             |||||||||||||||||||||
Sbjct: 64031 acaacaacaaatggaaaagta 64011
to top
>emb|BX323588.10| Zebrafish DNA sequence from clone DKEY-225F23 in linkage group 2,
              complete sequence
          Length = 248002

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 610    aaaaaggtcaccgagatgatgaacc 634
              |||||| ||||||||||||||||||
Sbjct: 148929 aaaaagctcaccgagatgatgaacc 148953
to top
>dbj|AB241456.1| Lotus japonicus TINod gene for transcription initiator for nodulation,
             complete cds
          Length = 23401

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   agctgctgcagcaccccattg 290
             |||||||||||||||||||||
Sbjct: 11747 agctgctgcagcaccccattg 11727
to top
>gb|AC154102.15| Mus musculus chromosome 8, clone RP24-186O14, complete sequence
          Length = 171510

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 565   tgctagggtttaagattcctgggc 588
             |||||||||||| |||||||||||
Sbjct: 17989 tgctagggtttaggattcctgggc 17966
to top
>gb|AY722924.2| Borrelia garinii PBi variable plasmid segment G1M1b07c12.s1, WORKING
            DRAFT SEQUENCE
          Length = 11868

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 39   gtaaagtacataaagacaacaacaaatg 66
            ||||||||  ||||||||||||||||||
Sbjct: 9958 gtaaagtagctaaagacaacaacaaatg 9985
to top
>ref|XM_639724.1| Dictyostelium discoideum putative protein tyrosine kinase
          (DDB0185215), partial mRNA
          Length = 4662

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 50 aaagacaacaacaaatggaa 69
          ||||||||||||||||||||
Sbjct: 38 aaagacaacaacaaatggaa 57
to top
>ref|XM_639342.1| Dictyostelium discoideum hypothetical protein (DDB0217231),
          partial mRNA
          Length = 4662

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 50 aaagacaacaacaaatggaa 69
          ||||||||||||||||||||
Sbjct: 38 aaagacaacaacaaatggaa 57
to top
>ref|XM_630828.1| Dictyostelium discoideum hypothetical protein (DDB0188687), partial
            mRNA
          Length = 2418

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   aaagacaacaacaaatggaa 69
            ||||||||||||||||||||
Sbjct: 989  aaagacaacaacaaatggaa 1008
to top
>gb|AC123645.7| Mus musculus chromosome 15, clone RP23-99N19, complete sequence
          Length = 192973

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   tcaagctgccagctgctgca 279
             ||||||||||||||||||||
Sbjct: 37872 tcaagctgccagctgctgca 37891
to top
>gb|AC159093.4| Mus musculus chromosome 15, clone RP23-117F23, complete sequence
          Length = 200512

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    ccacaaaacattctttatag 180
              ||||||||||||||||||||
Sbjct: 161463 ccacaaaacattctttatag 161482
to top
>ref|XM_420709.1| PREDICTED: Gallus gallus similar to sec1 family domain containing
           2; syntaxin binding protein 1-like 1 (LOC422755), mRNA
          Length = 5558

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 256 gcattcaagctgccagctgc 275
           ||||||||||||||||||||
Sbjct: 710 gcattcaagctgccagctgc 729
to top
>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 241022

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    agagcaaatcacacagagaa 158
              ||||||||||||||||||||
Sbjct: 228616 agagcaaatcacacagagaa 228597
to top
>gb|AC115684.2| Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4,
             complete sequence
          Length = 82139

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aaagacaacaacaaatggaa 69
             ||||||||||||||||||||
Sbjct: 26567 aaagacaacaacaaatggaa 26586
to top
>gb|AC117689.11| Mus musculus chromosome 12, clone RP23-446I19, complete sequence
          Length = 200562

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    gcagttctgatccatcagac 252
              ||||||||||||||||||||
Sbjct: 142929 gcagttctgatccatcagac 142948
to top
>emb|CT025542.5| Mouse DNA sequence from clone RP24-270A18 on chromosome 12, complete
            sequence
          Length = 181654

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  gcagttctgatccatcagac 252
            ||||||||||||||||||||
Sbjct: 9436 gcagttctgatccatcagac 9455
to top
>gb|AY232265.1| Dictyostelium discoideum putative protein Roco2 (roco2) gene,
           complete cds
          Length = 5022

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  aaagacaacaacaaatggaa 69
           ||||||||||||||||||||
Sbjct: 218 aaagacaacaacaaatggaa 237
to top
>emb|Z78022.1|HS37M17 Human DNA sequence from clone RP1-37M17 on chromosome X Contains the 5'
             end of the RAP2C gene for RAP2C (member of RAS oncogene
             family), a novel gene and a CpG island, complete sequence
          Length = 101076

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   acacagagaacaccacaaaa 168
             ||||||||||||||||||||
Sbjct: 39865 acacagagaacaccacaaaa 39846
to top
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    gcagcaccccattgacgagc 296
              ||||||||||||||||||||
Sbjct: 494197 gcagcaccccattgacgagc 494216
to top
>emb|AL358876.11| Human DNA sequence from clone RP11-431K24 on chromosome 1 Contains the 3'
              end of a novel gene (FLJ26758), a 52kDa eukaryotic
              translation initiation factor 2 subunit 3 gamma  (EIF2S3)
              pseudogene and two novel genes, complete sequence
          Length = 171183

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     cttgcaagtctctgcagtta 96
              ||||||||||||||||||||
Sbjct: 110017 cttgcaagtctctgcagtta 109998
to top
>emb|AL158015.9| Human DNA sequence from clone RP11-195N11 on chromosome 20 Contains ESTs,
              STSs and GSSs, complete sequence
          Length = 106123

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     aacaaatggaaaagtaatct 78
              ||||||||||||||||||||
Sbjct: 103377 aacaaatggaaaagtaatct 103396
to top
>emb|AL136526.27| Human DNA sequence from clone RP11-151A6 on chromosome 13q32.21-33.3
              Contains the 3' end of the PCCA gene for propionyl Coenzyme
              A carboxylase alpha polypeptide, the 3' end of a novel
              gene, a novel gene for a protein similar to ribosomal
              protein 26, the 3' end of a novel gene, a novel gene and a
              CpG island, complete sequence
          Length = 179804

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    tatgaatgaatttcagtact 426
              ||||||||||||||||||||
Sbjct: 149506 tatgaatgaatttcagtact 149487
to top
>emb|AL121772.19|HSJ965G21 Human DNA sequence from clone RP5-965G21 on chromosome 20 Contains
            the PYGB gene encoding the brain form of glycogen
            phosphorylase, the 3' end of the C20orf22 gene for
            chromosome 20 open reading frame 22 and a CpG island,
            complete sequence
          Length = 75499

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 597  ggaggttgcctctaaaaagg 616
            ||||||||||||||||||||
Sbjct: 2815 ggaggttgcctctaaaaagg 2834
to top
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1315119 agacaacaacaaatggaaaa 1315138
to top
>gb|AC087376.5| Homo sapiens chromosome 11, clone RP11-230O19, complete sequence
          Length = 164441

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 706    gaaattctttgtgatgctat 725
              ||||||||||||||||||||
Sbjct: 159449 gaaattctttgtgatgctat 159468
to top
>gb|AC099567.2| Homo sapiens chromosome 1 clone RP5-936J12, complete sequence
          Length = 171400

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acacagagaacaccacaaaa 168
             ||||||||||||||||||||
Sbjct: 68747 acacagagaacaccacaaaa 68766
to top
>gb|AC008249.14| Homo sapiens 3 BAC RP11-211P13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184203

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   atgaatttcagtactctagg 431
             ||||||||||||||||||||
Sbjct: 49930 atgaatttcagtactctagg 49949
to top
>gb|AC093573.17| Pan troglodytes clone rp43-32j20, complete sequence
          Length = 170502

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    ccagctgctgcagcacccca 287
              ||||||||||||||||||||
Sbjct: 130618 ccagctgctgcagcacccca 130637
to top
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1362816 agacaacaacaaatggaaaa 1362835
to top
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
          Length = 102433

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 5     taaaaagnacttatatttaaaaatgaaggga 35
             ||||||  ||||||||||||||| |||||||
Sbjct: 83595 taaaaaaaacttatatttaaaaacgaaggga 83625
to top
>gb|AC013714.8| Homo sapiens chromosome , clone RP11-22P4, complete sequence
          Length = 140009

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 706   gaaattctttgtgatgctat 725
             ||||||||||||||||||||
Sbjct: 10429 gaaattctttgtgatgctat 10448
to top
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1325914 agacaacaacaaatggaaaa 1325933
to top
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1222140 agacaacaacaaatggaaaa 1222159
to top
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1302110 agacaacaacaaatggaaaa 1302129
to top
>gb|AC007308.13| Homo sapiens chromosome 22 clone pac408 map 22q11, complete sequence
          Length = 215788

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   ccagctgctgcagcacccca 287
             ||||||||||||||||||||
Sbjct: 35944 ccagctgctgcagcacccca 35963
to top
>gb|AC020552.4|AC020552 Homo sapiens BAC clone RP11-431K24 from 1, complete sequence
          Length = 178820

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     cttgcaagtctctgcagtta 96
              ||||||||||||||||||||
Sbjct: 106158 cttgcaagtctctgcagtta 106139
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 514      atgattagagacataagttt 533
                ||||||||||||||||||||
Sbjct: 13539737 atgattagagacataagttt 13539718



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 308     tcatagcaaatgatgttaca 327
               ||||||||||||||||||||
Sbjct: 2936240 tcatagcaaatgatgttaca 2936259
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 27       atgaagggactagtaaagta 46
                ||||||||||||||||||||
Sbjct: 21420684 atgaagggactagtaaagta 21420665
to top
>gb|AC114398.3| Homo sapiens chromosome 3 clone RP11-495E23, complete sequence
          Length = 233454

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   atgaatttcagtactctagg 431
             ||||||||||||||||||||
Sbjct: 64705 atgaatttcagtactctagg 64686
to top
>gb|AC027220.9| Homo sapiens chromosome 15, clone RP11-731G9, complete sequence
          Length = 98984

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    taaaaatgaagggactagtaaagt 45
             |||||||||| |||||||||||||
Sbjct: 59405 taaaaatgaaaggactagtaaagt 59428
to top
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1286624 agacaacaacaaatggaaaa 1286643
to top
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1286487 agacaacaacaaatggaaaa 1286506
to top
>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1729_E01
          Length = 155527

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    atgaagggactagtaaagta 46
             ||||||||||||||||||||
Sbjct: 64740 atgaagggactagtaaagta 64721
to top
>gb|AF146687.1|FRNINE1 Fugu rubripes U2 small nuclear ribonucleoprotein auxiliary factor
            subunit-related protein (U2AF1-RS2), 19 kDa Golgi adaptor
            protein adaptin (AP19), and phosphorylase kinase alpha 2
            subunit (PHKA2) genes, complete cds; kelch protein
            (KELCH1) and kelch protein (KELCH2) genes, partial cds;
            and protein phosphatase 1 (PPEF-1), X-linked juvenile
            retinoschisis precursor protein (XLRS1), and
            serine-threonine kinase 9 (STK9) genes, complete cds
          Length = 62576

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  cacacagagaacaccacaaa 167
            ||||||||||||||||||||
Sbjct: 1917 cacacagagaacaccacaaa 1898
to top
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1328325 agacaacaacaaatggaaaa 1328344
to top
>dbj|AP001874.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2238L14, complete
             sequence
          Length = 124167

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   atgaatttcagtactctagg 431
             ||||||||||||||||||||
Sbjct: 60256 atgaatttcagtactctagg 60275
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 514      atgattagagacataagttt 533
                ||||||||||||||||||||
Sbjct: 13494011 atgattagagacataagttt 13493992



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 308     tcatagcaaatgatgttaca 327
               ||||||||||||||||||||
Sbjct: 2936184 tcatagcaaatgatgttaca 2936203
to top
>emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb0059G18 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145661

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   tcatagcaaatgatgttaca 327
             ||||||||||||||||||||
Sbjct: 79862 tcatagcaaatgatgttaca 79843
to top
>emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa0029K06 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 154442

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   atgattagagacataagttt 533
             ||||||||||||||||||||
Sbjct: 45502 atgattagagacataagttt 45521
to top
>gb|BC037823.1| Homo sapiens chromosome 15 open reading frame 44, mRNA (cDNA clone
           IMAGE:4800066), complete cds
          Length = 1784

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 22  taaaaatgaagggactagtaaagt 45
           |||||||||| |||||||||||||
Sbjct: 258 taaaaatgaaaggactagtaaagt 235
to top
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      agacaacaacaaatggaaaa 71
               ||||||||||||||||||||
Sbjct: 1251761 agacaacaacaaatggaaaa 1251780
to top
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 693     catcttgtgtgctgaaattc 712
               ||||||||||||||||||||
Sbjct: 2059836 catcttgtgtgctgaaattc 2059855
to top
>gb|AC027541.12| Homo sapiens chromosome 8, clone RP11-324F11, complete sequence
          Length = 164299

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    caagtctctgcagttaactc 100
             ||||||||||||||||||||
Sbjct: 58924 caagtctctgcagttaactc 58905
to top
>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete
             sequence
          Length = 226567

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   agagcaaatcacacagagaa 158
             ||||||||||||||||||||
Sbjct: 79785 agagcaaatcacacagagaa 79804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,431,064
Number of Sequences: 3902068
Number of extensions: 7431064
Number of successful extensions: 151633
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151001
Number of HSP's gapped (non-prelim): 632
length of query: 726
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 703
effective length of database: 17,143,297,704
effective search space: 12051738285912
effective search space used: 12051738285912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top