ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdi11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-li... 28 8.8
2LEPA_SILPO (Q5LUS0) GTP-binding protein lepA 28 8.8

>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like protein)|
           (Solute carrier family 4 member 3) (Anion exchanger 3
           brain isoform)
          Length = 1233

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 362 QPMPRRGKRHGRCPQRTTXS*STSAXPTRAHAPRCA--RSPRW 240
           +P+P  G R  + PQR     S S+   RA APR A  RS  W
Sbjct: 187 KPLPSVGPRSDKSPQR-----SVSSSSPRARAPRVAGERSRPW 224



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>LEPA_SILPO (Q5LUS0) GTP-binding protein lepA|
          Length = 599

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +1

Query: 16  YSRYRHLQTVVRILFFLEKKNVLYEY*SLHDSCMSHACLHACVRACVNLDHLDRTGKARP 195
           Y  Y  +  +VRI+  + KK +  ++       MS+  LH          H+DR G  RP
Sbjct: 203 YDSYLGVIVLVRIMDGVLKKGMRVKF-------MSNGTLH----------HVDRIGVFRP 245

Query: 196 RGRRLSSASPGDV 234
             + + S  PG++
Sbjct: 246 AMQMIDSLGPGEI 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,091,652
Number of Sequences: 219361
Number of extensions: 685080
Number of successful extensions: 1851
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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