>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC|
           3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2
           homolog)
          Length = 1107

 Score = 37.7 bits (86), Expect(2) = 4e-04
 Identities = 26/61 (42%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 329 DLQAEVRAHRT--VKKVHVFHFCAEVFN*YLWKSRNIFYLCDTENVPSQYTIEQKVIERA 156
           DLQA+ RAHR    K+V VF FC E                        YTIE+KVIERA
Sbjct: 635 DLQAQDRAHRIGQKKEVQVFRFCTE------------------------YTIEEKVIERA 670

Query: 155 Y 153
           Y
Sbjct: 671 Y 671



 Score = 25.8 bits (55), Expect(2) = 4e-04
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = -1

Query: 162 ESIYKKLALDALVI*Q 115
           E  YKKLALDALVI Q
Sbjct: 668 ERAYKKLALDALVIQQ 683

>ISW2_ARATH (Q8RWY3) Putative chromatin remodelling complex ATPase chain (EC|
           3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2
           homolog)
          Length = 1057

 Score = 33.9 bits (76), Expect(2) = 0.005
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 332 VDLQAEVRAHR--TVKKVHVFHFCAEVFN*YLWKSRNIFYLCDTENVPSQYTIEQKVIER 159
           VDLQA+ RAHR    K+V VF FC E                          IE+KVIER
Sbjct: 592 VDLQAQDRAHRIGQKKEVQVFRFCTE------------------------SAIEEKVIER 627

Query: 158 AY 153
           AY
Sbjct: 628 AY 629



 Score = 25.8 bits (55), Expect(2) = 0.005
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = -1

Query: 162 ESIYKKLALDALVI*Q 115
           E  YKKLALDALVI Q
Sbjct: 626 ERAYKKLALDALVIQQ 641

>HEPA_HHV7J (P52376) DNA helicase/primase complex-associated protein|
          Length = 659

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = -3

Query: 460 SLLKYPLCCHEISATQISDLARLKRGL-MWDTNQSLLAYTLVLQWICKLKFVHIELLKKF 284
           SL  + +  +EIS   +  ++  K  + MWD N+ +++ T   + IC+L F + ++++K 
Sbjct: 40  SLHTFLVIGNEISENLLDKISISKEKIFMWDLNEQIMSITQKTESICELMFGNKQIIQK- 98

Query: 283 MSSIFAPRFLIDIYGRVEISFICV 212
           +S  F    +I      EI  +C+
Sbjct: 99  LSRTFIFLTIILNSNMYEIIDVCI 122

>HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 (EC 3.6.1.-) (ATP-dependent|
           helicase hrp1)
          Length = 1373

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 26/80 (32%), Positives = 38/80 (47%)
 Frame = -2

Query: 329 DLQAEVRAHRTVKKVHVFHFCAEVFN*YLWKSRNIFYLCDTENVPSQYTIEQKVIERAYI 150
           DLQA  RAHR  +K HV        N Y + S++              T+E+ ++ERA  
Sbjct: 807 DLQAMARAHRIGQKNHV--------NVYRFLSKD--------------TVEEDILERARR 844

Query: 149 RSLPWMLWSYSRILIGRTEK 90
           +    M+  Y+ I +G TEK
Sbjct: 845 K----MILEYAIISLGVTEK 860


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,129,939
Number of Sequences: 219361
Number of extensions: 1974431
Number of successful extensions: 4474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4469
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7592921998
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)