>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
             complete sequence
          Length = 164898

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                         
Query: 121   tatgaccaaagcatccaaggcaagcttcttatatatgctctctcgattactttttgctca 180
             ||||||||||||||||| |||||||||||  |||| |||||||| || || |||| ||||
Sbjct: 15327 tatgaccaaagcatccagggcaagcttct--tataagctctctcaatcaccttttcctca 15270

                         
Query: 181   attgtatactgc 192
             ||||||||||||
Sbjct: 15269 attgtatactgc 15258

>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                         
Query: 121   tatgaccaaagcatccaaggcaagcttcttatatatgctctctcgattactttttgctca 180
             ||||||||||||||||| |||||||||||  |||| |||||||| || || |||| ||||
Sbjct: 46855 tatgaccaaagcatccagggcaagcttct--tataagctctctcaatcaccttttcctca 46912

                         
Query: 181   attgtatactgc 192
             ||||||||||||
Sbjct: 46913 attgtatactgc 46924

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                           
Query: 121     tatgaccaaagcatccaaggcaagcttcttatatatgctctctcgattactttttgctca 180
               ||||||||||||||||| |||||||||||  |||| |||||||| || || |||| ||||
Sbjct: 2820716 tatgaccaaagcatccagggcaagcttct--tataagctctctcaatcaccttttcctca 2820659

                           
Query: 181     attgtatactgc 192
               ||||||||||||
Sbjct: 2820658 attgtatactgc 2820647



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 74      gaagaaacaaaagcaatttttctgt 98
               |||||||||||||||| ||||||||
Sbjct: 1239415 gaagaaacaaaagcaacttttctgt 1239391

>ref|XM_493917.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3414

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/70 (88%), Gaps = 2/70 (2%)
 Strand = Plus / Minus

                                                                        
Query: 121  tatgaccaaagcatccaaggcaagcttcttatatatgctctctcgattactttttgctca 180
            ||||||||||||||||| |||||||||||  |||| |||||||| || || |||| ||||
Sbjct: 2082 tatgaccaaagcatccagggcaagcttct--tataagctctctcaatcaccttttcctca 2025

                      
Query: 181  attgtatact 190
            ||||||||||
Sbjct: 2024 attgtatact 2015

>dbj|AK100732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117L05, full
            insert sequence
          Length = 4000

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/70 (88%), Gaps = 2/70 (2%)
 Strand = Plus / Minus

                                                                        
Query: 121  tatgaccaaagcatccaaggcaagcttcttatatatgctctctcgattactttttgctca 180
            ||||||||||||||||| |||||||||||  |||| |||||||| || || |||| ||||
Sbjct: 2417 tatgaccaaagcatccagggcaagcttct--tataagctctctcaatcaccttttcctca 2360

                      
Query: 181  attgtatact 190
            ||||||||||
Sbjct: 2359 attgtatact 2350

>ref|NM_193807.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3369

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 122  atgaccaaagcatccaaggcaagcttctt 150
            ||||||||||||||||| |||||||||||
Sbjct: 2042 atgaccaaagcatccaatgcaagcttctt 2014

>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0560B06
          Length = 161720

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 122   atgaccaaagcatccaaggcaagcttctt 150
             ||||||||||||||||| |||||||||||
Sbjct: 77229 atgaccaaagcatccaatgcaagcttctt 77257

>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete
             Sequence, complete sequence
          Length = 105198

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 122   atgaccaaagcatccaaggcaagcttctt 150
             ||||||||||||||||| |||||||||||
Sbjct: 14946 atgaccaaagcatccaatgcaagcttctt 14974

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 122      atgaccaaagcatccaaggcaagcttctt 150
                ||||||||||||||||| |||||||||||
Sbjct: 15061177 atgaccaaagcatccaatgcaagcttctt 15061205

>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0784G04
          Length = 157458

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 122   atgaccaaagcatccaaggcaagcttctt 150
             ||||||||||||||||| |||||||||||
Sbjct: 90745 atgaccaaagcatccaatgcaagcttctt 90773

>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1329D01
          Length = 141938

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 122   atgaccaaagcatccaaggcaagcttctt 150
             ||||||||||||||||| |||||||||||
Sbjct: 87424 atgaccaaagcatccaatgcaagcttctt 87452

>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0043B10
          Length = 167399

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 122   atgaccaaagcatccaaggcaagcttctt 150
             ||||||||||||||||| |||||||||||
Sbjct: 33143 atgaccaaagcatccaatgcaagcttctt 33171

>dbj|AK105265.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D05, full
            insert sequence
          Length = 3749

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 122  atgaccaaagcatccaaggcaagcttctt 150
            ||||||||||||||||| |||||||||||
Sbjct: 2134 atgaccaaagcatccaatgcaagcttctt 2106

>gb|AC113285.9| Mus musculus chromosome 5, clone RP23-407I6, complete sequence
          Length = 283052

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 29    ccttttaacatttaacatgaaa 50
             ||||||||||||||||||||||
Sbjct: 97918 ccttttaacatttaacatgaaa 97897

>gb|AC146570.6| Medicago truncatula clone mth2-103j7, complete sequence
          Length = 122623

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 37    catttaacatgaaaaataattacatt 62
             ||||||||| ||||||||||||||||
Sbjct: 17580 catttaacacgaaaaataattacatt 17555

>emb|AL645568.9| Human DNA sequence from clone RP11-296O14 on chromosome 1 Contains a
             pseudogene similar to part of ribosomal protein L26
             (RPL26), a novel pseudogene and a novel gene, complete
             sequence
          Length = 136031

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 33    ttaacatttaacatgaaaaataatta 58
             ||||||||| ||||||||||||||||
Sbjct: 48636 ttaacattttacatgaaaaataatta 48611

>emb|AL391867.5| Human DNA sequence from clone RP11-402M4 on chromosome 9, complete
            sequence
          Length = 164444

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 73   agaagaaacaaaagcaattttt 94
            ||||||||||||||||||||||
Sbjct: 3575 agaagaaacaaaagcaattttt 3596

>gb|BC097051.1| Danio rerio zgc:63637, mRNA (cDNA clone MGC:113973 IMAGE:2639156),
            complete cds
          Length = 2542

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 207  tgtatcacacaaataaaagatatttc 232
            ||||||||| ||||||||||||||||
Sbjct: 2495 tgtatcacataaataaaagatatttc 2520

>gb|AC009032.8| Homo sapiens chromosome 16 clone RP11-140H17, complete sequence
          Length = 184511

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 35    aacatttaacatgaaaaataat 56
             ||||||||||||||||||||||
Sbjct: 60043 aacatttaacatgaaaaataat 60022

>gb|AC116815.15| Mus musculus chromosome 5, clone RP24-357H22, complete sequence
          Length = 179737

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 439    agagagggtatttgagaagag 459
              |||||||||||||||||||||
Sbjct: 105064 agagagggtatttgagaagag 105084

>gb|AC079021.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0008A07,
             complete sequence
          Length = 135809

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 74    gaagaaacaaaagcaatttttctgt 98
             |||||||||||||||| ||||||||
Sbjct: 34228 gaagaaacaaaagcaacttttctgt 34204

>gb|AC134434.4| Mus musculus BAC clone RP24-420E8 from chromosome 7, complete sequence
          Length = 214856

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 438   cagagagggtatttgagaaga 458
             |||||||||||||||||||||
Sbjct: 79612 cagagagggtatttgagaaga 79632

>gb|AC124398.4| Mus musculus BAC clone RP24-349M24 from chromosome 12, complete
             sequence
          Length = 176369

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 583   gaagtggagagcaaacttatt 603
             |||||||||||||||||||||
Sbjct: 79514 gaagtggagagcaaacttatt 79534

>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    tcacacaaataaaagatattt 231
              |||||||||||||||||||||
Sbjct: 107811 tcacacaaataaaagatattt 107791

>gb|AC121612.2| Mus musculus BAC clone RP23-337A17 from 6, complete sequence
          Length = 209548

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 438    cagagagggtatttgagaaga 458
              |||||||||||||||||||||
Sbjct: 106451 cagagagggtatttgagaaga 106431

>emb|CR376761.19| Zebrafish DNA sequence from clone DKEY-6F24 in linkage group 2, complete
              sequence
          Length = 231384

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 532    atcagtaatttgtttgcactataaa 556
              |||||||| ||||||||||||||||
Sbjct: 185124 atcagtaaattgtttgcactataaa 185148

>emb|AL355140.25| Human DNA sequence from clone RP11-548B3 on chromosome 9 Contains the
              gene for Friedreich ataxia region gene X123, the 3' end of
              the APBA1 gene for myloid beta (A4) precursor
              protein-binding, family A, member 1 (X11), a novel gene and
              two CpG islands, complete sequence
          Length = 185096

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 198    aacattttctgtatcacacaa 218
              |||||||||||||||||||||
Sbjct: 153108 aacattttctgtatcacacaa 153088

>gb|AC130408.5| Homo sapiens 3 BAC RP11-17H6 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 33001

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 38   atttaacatgaaaaataatta 58
            |||||||||||||||||||||
Sbjct: 5221 atttaacatgaaaaataatta 5201

>gb|AC108044.5| Homo sapiens BAC clone RP11-280E3 from 4, complete sequence
          Length = 173834

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 218   aataaaagatatttctactcttcca 242
             |||||| ||||||||||||||||||
Sbjct: 83779 aataaatgatatttctactcttcca 83803

>gb|AC114485.2| Homo sapiens chromosome 1 clone RP11-202K23, complete sequence
          Length = 140621

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 211   tcacacaaataaaagatatttctac 235
             |||||||||||||||||||| ||||
Sbjct: 71382 tcacacaaataaaagatattactac 71406

>emb|BX294123.12| Zebrafish DNA sequence from clone DKEYP-16G7 in linkage group 2,
             complete sequence
          Length = 168359

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 545   ttgcactataaaacaaatgtt 565
             |||||||||||||||||||||
Sbjct: 77591 ttgcactataaaacaaatgtt 77611

>gb|AC024830.2| Caenorhabditis elegans cosmid Y55F3BR, complete sequence
          Length = 55299

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   aagacatgaacttttttaaca 297
             |||||||||||||||||||||
Sbjct: 21532 aagacatgaacttttttaaca 21512

>emb|AL935063.7| Zebrafish DNA sequence from clone CH211-165P5, complete sequence
          Length = 141819

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 545    ttgcactataaaacaaatgtt 565
              |||||||||||||||||||||
Sbjct: 108912 ttgcactataaaacaaatgtt 108932

>emb|AL807400.9| Mouse DNA sequence from clone RP23-196A4 on chromosome 2, complete
             sequence
          Length = 220579

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   ataaaagatatttctactctt 239
             |||||||||||||||||||||
Sbjct: 91564 ataaaagatatttctactctt 91544

>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02,
             complete sequence
          Length = 90509

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 74    gaagaaacaaaagcaatttttctgt 98
             |||||||||||||||| ||||||||
Sbjct: 89701 gaagaaacaaaagcaacttttctgt 89677

>dbj|AB047613.1| Macaca fascicularis brain cDNA, clone:QnpA-11856
          Length = 2407

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 aacattttctgtatcacacaa 218
           |||||||||||||||||||||
Sbjct: 57  aacattttctgtatcacacaa 77


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9,055,245
Number of Sequences: 3902068
Number of extensions: 9055245
Number of successful extensions: 267841
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 267601
Number of HSP's gapped (non-prelim): 235
length of query: 732
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 709
effective length of database: 17,143,297,704
effective search space: 12154598072136
effective search space used: 12154598072136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)