ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdi06 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 109 bits (272), Expect = 2e-24 Identities = 49/49 (100%), Positives = 49/49 (100%) Frame = -1 Query: 328 AKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 182 AKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT Sbjct: 70 AKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 92.8 bits (229), Expect = 2e-19 Identities = 40/48 (83%), Positives = 43/48 (89%) Frame = -1 Query: 325 KGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 182 KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVYVGG TGL +WAVT Sbjct: 71 KGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 92.8 bits (229), Expect = 2e-19 Identities = 40/48 (83%), Positives = 43/48 (89%) Frame = -1 Query: 325 KGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 182 KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVYVGG TGL +WAVT Sbjct: 71 KGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 92.8 bits (229), Expect = 2e-19 Identities = 40/48 (83%), Positives = 43/48 (89%) Frame = -1 Query: 325 KGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 182 KGKGVYQF DKYGANVDGYSPIY ++WSPSGDVYVGG TGL +WAVT Sbjct: 69 KGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVT 116
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 90.1 bits (222), Expect = 1e-18 Identities = 38/47 (80%), Positives = 41/47 (87%) Frame = -1 Query: 322 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 182 GKGVYQF DKYGANVDGYSPIY EEW+P+GDVY GG TGL +WAVT Sbjct: 74 GKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 84.0 bits (206), Expect = 9e-17 Identities = 37/48 (77%), Positives = 40/48 (83%) Frame = -1 Query: 325 KGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 182 KG GVY+F DKYGANVDGYSPIY +EWS SGDVY GG TGL +WAVT Sbjct: 74 KGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVT 121
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 82.0 bits (201), Expect = 3e-16 Identities = 36/48 (75%), Positives = 39/48 (81%) Frame = -1 Query: 325 KGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 182 KG GVY++ DKYGANVDGYSPIY EWS SGDVY GG TGL +WAVT Sbjct: 73 KGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 171 IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 302 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 64 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 231 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRK 254
>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (MRF1-like) (Modulator recognition factor protein 2) (MRF-2) (Developmentally and sexually retarded with transient immune abnormalities protein) Length = 1188 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 64 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 231 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESVCDEFAPNLKGRPRK 254
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 139 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 246 Y R + +P + QQ+ L + P QH+++H ++T Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386
>RTCA_AERPE (Q9YES0) Probable RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)| (RNA-3'-phosphate cyclase) (RNA cyclase) Length = 353 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -1 Query: 274 GYSPIYTPEEWSPSGDVYVGGKTGLFLWAV 185 G PI E + P D ++G TG+ +WAV Sbjct: 216 GVDPIVEIEAYKPHRDPHLGPGTGVLVWAV 245
>ENDD1_MOUSE (Q8C522) Endonuclease domain-containing 1 protein precursor (EC| 3.1.30.-) Length = 501 Score = 28.1 bits (61), Expect = 5.7 Identities = 7/21 (33%), Positives = 17/21 (80%) Frame = +3 Query: 36 ILTYVLTVIIRTIIHIVWCIA 98 ++ Y++T ++R I+H++W +A Sbjct: 346 LIYYLVTAVLRNIVHLLWLVA 366
>MURI_RHILO (Q98NP9) Glutamate racemase (EC 5.1.1.3)| Length = 262 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +1 Query: 178 QESLPRETAPSFLQHKRRHLETTLLVCI*GCTH-QHLLHTCRQTGKHPSPW 327 +E++ E AP F++H+ + +L CTH L++ R+T P W Sbjct: 163 EEAVRAEIAPCFMEHEGLRTDIVVL----ACTHYPFLVNRMRKTAPWPVDW 209
>Y1287_METMA (Q8PXD4) UPF0313 protein MM1287| Length = 626 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = -2 Query: 261 YTHQKSGLQVATFMLEERRGCFSGQ*LLLEFCWAVLFLSTVLAPWLPEAYVQQTKLCTKR 82 YT L++ F L RGCF G FC ++A E+ +++ K T++ Sbjct: 314 YTEPVPALEMVKFSLTTHRGCFGG----CSFCAITQHQGRMIASRSIESILREAKKLTQK 369
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -3 Query: 326 QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRLCWRKDGAVS-LGSDSCWNSA 165 +GEG P+ VW W Q ++ R + +K KD V LG++ C++S+ Sbjct: 75 KGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGTEHCYDSS 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,400,407 Number of Sequences: 219361 Number of extensions: 1044570 Number of successful extensions: 3283 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3280 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
