ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdi06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 636 e-179
2emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 285 4e-74
3ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 190 2e-45
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
5dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
6dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
7gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 121 1e-24
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
9dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
10emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 90 5e-15
11gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 86 8e-14
12gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 84 3e-13
13dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 84 3e-13
14emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 78 2e-11
15gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypept... 66 8e-08
16emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 62 1e-06
17gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypep... 58 2e-05
18emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 54 3e-04
19emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 54 3e-04
20dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.001
21dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.001
22emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS... 48 0.018
23dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complet... 44 0.28
24ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 42 1.1
25gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 42 1.1
26gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 42 1.1
27gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-relat... 42 1.1
28emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 42 1.1
29emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Co... 42 1.1
30emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Co... 42 1.1
31emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 42 1.1
32emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Co... 42 1.1
33emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 42 1.1
34gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 42 1.1
35emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 42 1.1
36gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone... 42 1.1
37gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 4.3
38gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, com... 40 4.3
39gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, co... 40 4.3
40gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, com... 40 4.3
41gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 4.3
42gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 4.3
43emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section... 40 4.3
44emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N... 40 4.3
45dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, c... 40 4.3
46gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 4.3
47gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 4.3
48dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 4.3
49dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor... 40 4.3
50gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 4.3
51dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full ... 40 4.3 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  636 bits (321), Expect = e-179
 Identities = 328/329 (99%), Gaps = 1/329 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatatttactgatttgcgggtagtgatatttgtatcc-ttacatatgtcctgacggtt 59
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 562 aggatatttactgatttgcgggtagtgatatttgtatccattacatatgtcctgacggtt 503

                                                                       
Query: 60  ataatccgcactattatacacatcgtttggtgcatagcttggtttgctgcacataggctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ataatccgcactattatacacatcgtttggtgcatagcttggtttgctgcacataggctt 443

                                                                       
Query: 120 caggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagca 383

                                                                       
Query: 180 agagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttgga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttgga 323

                                                                       
Query: 240 gaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcg 263

                                        
Query: 300 gcaaactggtaaacacccttccccttggc 328
           |||||||||||||||||||||||||||||
Sbjct: 262 gcaaactggtaaacacccttccccttggc 234
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  285 bits (144), Expect = 4e-74
 Identities = 153/156 (98%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 174 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 318

                                                                       
Query: 234 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 258

                                               
Query: 294 ttgtcgg-caaactggtaaacacccttccccttggc 328
           |||||||   ||||||||||||||||||||||||||
Sbjct: 257 ttgtcggnhdaactggtaaacacccttccccttggc 222
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  190 bits (96), Expect = 2e-45
 Identities = 177/204 (86%)
 Strand = Plus / Minus

                                                                       
Query: 123 gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaaga 182
           ||||||||||| |||||| |||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                                                       
Query: 183 gtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagac 242
           || ||||||||||| |||| ||| ||||||||||||  |||||| || |||||||| |||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctccagtataaacatcaccacttggtgac 282

                                                                       
Query: 243 cactcttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcggca 302
           || || |||||  | ||||| |||||||| ||||||||||| ||||||||||||  ||||
Sbjct: 281 cattcctctgggttatatattgggctgtatccatcaacattagctccatacttgctggca 222

                                   
Query: 303 aactggtaaacacccttccccttg 326
           |||||||| || || |||||||||
Sbjct: 221 aactggtagacccctttccccttg 198
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  165 bits (83), Expect = 1e-37
 Identities = 161/187 (86%)
 Strand = Plus / Minus

                                                                       
Query: 142 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 201
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 202 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 261
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 262 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 321
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                  
Query: 322 ccttggc 328
           |||||||
Sbjct: 280 ccttggc 274
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  165 bits (83), Expect = 1e-37
 Identities = 161/187 (86%)
 Strand = Plus / Minus

                                                                       
Query: 142 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 201
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 202 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 261
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 262 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 321
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                  
Query: 322 ccttggc 328
           |||||||
Sbjct: 280 ccttggc 274
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  157 bits (79), Expect = 3e-35
 Identities = 160/187 (85%)
 Strand = Plus / Minus

                                                                       
Query: 142 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 201
           |||||||||||| ||| ||||| |  ||| ||||||||||||| | |||||||||||  |
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaagta 402

                                                                       
Query: 202 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 261
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 401 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 342

                                                                       
Query: 262 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 321
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 341 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 282

                  
Query: 322 ccttggc 328
           |||||||
Sbjct: 281 ccttggc 275
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score =  121 bits (61), Expect = 1e-24
 Identities = 154/185 (83%)
 Strand = Plus / Minus

                                                                       
Query: 141 ctgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaac 200
           ||||| |||||||||||||| ||   ||||| |||||||||||| | |||||||| ||  
Sbjct: 474 ctgtacacaagaagagcacctccacccagaagtccagcaagagtgattgcccagacaatg 415

                                                                       
Query: 201 agccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtat 260
           || || ||  |||||||||||||||| || ||||| |||||||| || ||||||| ||| 
Sbjct: 414 agaccagtggttcctccaacataaacatcaccactaggagaccattcgtctggtgagtag 355

                                                                       
Query: 261 atagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttc 320
           || |||||||| |||||||||||||| ||||| |||||  |||| ||||| |||||||| 
Sbjct: 354 atcgggctgtagccatcaacatttgcaccatatttgtccacaaattggtagacacccttt 295

                
Query: 321 ccctt 325
           |||||
Sbjct: 294 ccctt 290
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 6e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                           
Query: 116     gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 175
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 176     agcaagagtcactgcccagagaaacagccccgtctttcct 215
               || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 267     ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 324
               ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 2487136 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 2487079



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 267     ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 324
               ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 2489753 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 2489696



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                        
Query: 142     tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 198
               |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572



 Score = 46.1 bits (23), Expect = 0.070
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                          
Query: 213     cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 271
               ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 2487433 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 2487375
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  119 bits (60), Expect = 6e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                         
Query: 116   gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 175
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 176   agcaagagtcactgcccagagaaacagccccgtctttcct 215
             || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 267   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 324
             ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 52116 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 52059



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 267   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 324
             ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 54733 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 54676



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 142   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 198
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552



 Score = 46.1 bits (23), Expect = 0.070
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213   cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 271
             ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 52413 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 52355
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 272
           ||||||||||| || || |||||||||||||| || ||||   |||| || |||||||| 
Sbjct: 342 cctccaacatagacatcaccacttggagaccagtcatctgtgttgtagatggggctgtat 283

                                                                
Query: 273 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccctt 325
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||
Sbjct: 282 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttccctt 230
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 272
           ||||||||||| || || || ||||||||||| || ||||   |||| || |||||||| 
Sbjct: 197 cctccaacatagacatcaccgcttggagaccagtcatctgtgttgtagatggggctgtat 138

                                                                  
Query: 273 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 327
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 137 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttcccttgg 83
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 272
           ||||||||||| || || || |||| |||||| || ||||   |||| || |||||||| 
Sbjct: 133 cctccaacatanacatcaccgcttgnagaccagtcatctgtgttgtagatggggctgtat 74

                                                                  
Query: 273 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 327
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 73  ccatcaacatttgctccatatttgtcaacnaattggtaaacaccctttcccttgg 19
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 267   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 324
             ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 60883 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 60826



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 142   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 198
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319



 Score = 46.1 bits (23), Expect = 0.070
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213   cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 271
             ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 61180 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 61122
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 272
           ||||||||||| || || ||||||||||||||||| ||||   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccactcatctgtgttgtagatgggactgtat 264

                                                                  
Query: 273 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 327
           ||||||||||| |||||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 209
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>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete
           cds
          Length = 584

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 261 atagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttc 320
           ||||| ||||| ||||||||||| || ||||| |||||  ||||||||||||||||||| 
Sbjct: 276 ataggactgtatccatcaacattagcaccatatttgtccacaaactggtaaacacccttt 217

                
Query: 321 ccctt 325
           |||||
Sbjct: 216 ccctt 212
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 272
           ||||||||||| || || |||||||||||||| || || |   |||| || || ||||| 
Sbjct: 300 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 241

                                                                  
Query: 273 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 327
           ||||||||||| |||||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 240 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 186
to top
>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II,
           complete cds
          Length = 590

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 267 ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacaccctt 319
           ||||| ||||||||||| || |||||||||||  |||| ||||||||||||||
Sbjct: 292 ctgtaaccatcaacattggcaccatacttgtcaacaaattggtaaacaccctt 240
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 302 aaactggtaaacacccttccccttggc 328
           |||||||||||||||||||||||||||
Sbjct: 247 aaactggtaaacacccttccccttggc 221
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>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 272
           ||||||||||| || || |||||||||||||| || || |   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 264

                                                                  
Query: 273 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 327
           ||||||||||| || ||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagccccatatttgtcaacatattggtacacaccctttcccttgg 209
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>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403,
             complete sequence
          Length = 97807

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 267   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 324
             ||||| ||||||||||| || || ||||||||  || |||||||||||||||| ||||
Sbjct: 84239 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 84296
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>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b,
             complete sequence
          Length = 28275

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 267   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 324
             ||||| ||||||||||| || || ||||||||  || |||||||||||||||| ||||
Sbjct: 14725 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 14668
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>emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS1 gene
          Length = 3699

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 213  cctccaacataaacgtcgccacttggagaccactcttctg 252
            ||||||||||| || || ||||||||||||||||| ||||
Sbjct: 3042 cctccaacatagacatcaccacttggagaccactcatctg 3003



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 267  ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 324
            ||||| ||||||||||| |||||||| |||||  || | ||||| |||||||| ||||
Sbjct: 2892 ctgtatccatcaacattagctccatatttgtcaacatattggtacacaccctttccct 2835
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>dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complete cds
          Length = 910

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 288 ccatacttgtcggcaaactggtaaacacccttcccctt 325
           |||||||||||  |||| ||||| ||||||||||||||
Sbjct: 355 ccatacttgtcaacaaattggtagacacccttcccctt 318
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>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 316 c 316
           |
Sbjct: 293 c 293
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>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 286 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 227

            
Query: 316 c 316
           |
Sbjct: 226 c 226
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>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 336 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 277

            
Query: 316 c 316
           |
Sbjct: 276 c 276
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>gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-related kinase (PRK2) mRNA,
            partial cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 218  aacataaacgtcgccacttgg 238
            |||||||||||||||||||||
Sbjct: 1465 aacataaacgtcgccacttgg 1485
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>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 316 c 316
           |
Sbjct: 259 c 259
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>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 316 c 316
           |
Sbjct: 259 c 259
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>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 315 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 256

            
Query: 316 c 316
           |
Sbjct: 255 c 255
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>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 316 c 316
           |
Sbjct: 259 c 259
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>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 579

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 318 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 259

            
Query: 316 c 316
           |
Sbjct: 258 c 258
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>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 321 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 262

            
Query: 316 c 316
           |
Sbjct: 261 c 261
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>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 316 c 316
           |
Sbjct: 293 c 293
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>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 256  tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 315
            |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 1028 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 969

             
Query: 316  c 316
            |
Sbjct: 968  c 968
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>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II
           10kDa polypeptide mRNA, complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 256 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaa 304
           |||| ||||| ||||| |||||||| || || |||||||||||| ||||
Sbjct: 301 tgtagataggactgtatccatcaacgttcgcaccatacttgtcgacaaa 253
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 274     catcaacatttgctccatac 293
               ||||||||||||||||||||
Sbjct: 1176164 catcaacatttgctccatac 1176145
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>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence
          Length = 205300

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    cactcttctggtgtgtatat 262
              ||||||||||||||||||||
Sbjct: 143554 cactcttctggtgtgtatat 143573
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>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  agtactgtagacaagaagag 156
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550
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>gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, complete sequence
          Length = 213500

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     atttgtatccttacatatgtcctg 53
              |||||||||||| |||||||||||
Sbjct: 145129 atttgtatcctttcatatgtcctg 145152
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   ccagcagaattccagcaaga 182
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  ccagcagaattccagcaaga 182
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
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>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     ttggtttgctgcacataggc 117
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075
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>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   ttggtttgctgcacataggc 117
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331
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>dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, complete sequences
          Length = 103410

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    atttgtatccttacatatgtcctg 53
             |||||||||||| |||||||||||
Sbjct: 42122 atttgtatcctttcatatgtcctg 42099
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 30       atttgtatccttacatatgtcctg 53
                |||||||||||| |||||||||||
Sbjct: 14902130 atttgtatcctttcatatgtcctg 14902153
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   taaacacccttccccttggc 328
             ||||||||||||||||||||
Sbjct: 65315 taaacacccttccccttggc 65296
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>dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030046K16
           product:unclassifiable, full insert sequence
          Length = 2480

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 cactcttctggtgtgtatat 262
           ||||||||||||||||||||
Sbjct: 278 cactcttctggtgtgtatat 259
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>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  catcgtttggtgcatagctt 99
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
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>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    agtactgtagacaagaagag 156
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412
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>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  catcgtttggtgcatagctt 99
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,781,689
Number of Sequences: 3902068
Number of extensions: 2781689
Number of successful extensions: 92039
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91910
Number of HSP's gapped (non-prelim): 121
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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