ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdh24 |
|---|---|
| Clone Library Name | barley_pub |
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 108 bits (269), Expect = 2e-23 Identities = 55/88 (62%), Positives = 62/88 (70%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANLFIYH+PQEFGDQ+L F FG V+SAKVF+DK T SKCFGFVSYDNPVSAQ+AI Sbjct: 401 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 349 MMNGFXXXXXXXXXXXKRDNNNKHSKPF 266 MNGF KR N+ SKP+ Sbjct: 461 SMNGFQIGMKRLKVQLKRSKND--SKPY 486
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 108 bits (269), Expect = 2e-23 Identities = 55/88 (62%), Positives = 62/88 (70%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANLFIYH+PQEFGDQ+L F FG V+SAKVF+DK T SKCFGFVSYDNPVSAQ+AI Sbjct: 401 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 349 MMNGFXXXXXXXXXXXKRDNNNKHSKPF 266 MNGF KR N+ SKP+ Sbjct: 461 SMNGFQIGMKRLKVQLKRSKND--SKPY 486
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 57.8 bits (138), Expect = 3e-08 Identities = 22/64 (34%), Positives = 43/64 (67%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +E+ F ++GR+I++++ +D+ATG S+ GF+ +D + A+ AI Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184 Query: 349 MMNG 338 +NG Sbjct: 185 GLNG 188 Score = 49.7 bits (117), Expect = 8e-06 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ E F G + S K+ DK TG S +GFV+Y +P A AI Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 346 MNG 338 +NG Sbjct: 100 LNG 102 Score = 44.7 bits (104), Expect = 3e-04 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ E + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 343 NGF 335 NG+ Sbjct: 346 NGY 348
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 57.4 bits (137), Expect = 4e-08 Identities = 29/96 (30%), Positives = 49/96 (51%) Frame = -3 Query: 631 PHNPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGR 452 P +P+ P + S + S+ NL+I +P DQ+L Q +G+ Sbjct: 30 PAHPMAPPSPSTTSS--NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGK 87 Query: 451 VISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 ++S K +DKAT K +GFV +D+P +AQ A++ + Sbjct: 88 IVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL 123 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL+I ++P +QEL + + FG+VIS +V D ++G+S+ GF ++ ++ I Sbjct: 142 NLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEAVIGH 200 Query: 346 MNG 338 NG Sbjct: 201 FNG 203
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 57.4 bits (137), Expect = 4e-08 Identities = 23/64 (35%), Positives = 42/64 (65%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +EL F ++GR+I++++ VD+ TG S+ GF+ +D + A+ AI Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191 Query: 349 MMNG 338 +NG Sbjct: 192 GLNG 195 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ +E F G + S K+ DK TG S +GFV+Y +P A+ AI Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106 Query: 346 MNG 338 +NG Sbjct: 107 LNG 109 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ + + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 343 NGF 335 NG+ Sbjct: 359 NGY 361
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 57.4 bits (137), Expect = 4e-08 Identities = 22/64 (34%), Positives = 42/64 (65%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +E+ F ++GR+I++++ VD+ TG S+ GF+ +D + A+ AI Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184 Query: 349 MMNG 338 +NG Sbjct: 185 GLNG 188 Score = 49.7 bits (117), Expect = 8e-06 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ E F G + S K+ DK TG S +GFV+Y +P A AI Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 346 MNG 338 +NG Sbjct: 100 LNG 102 Score = 44.7 bits (104), Expect = 3e-04 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ E + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 343 NGF 335 NG+ Sbjct: 346 NGY 348
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 57.4 bits (137), Expect = 4e-08 Identities = 23/64 (35%), Positives = 42/64 (65%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +EL F ++GR+I++++ VD+ TG S+ GF+ +D + A+ AI Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196 Query: 349 MMNG 338 +NG Sbjct: 197 GLNG 200 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ +E F G + S K+ DK TG S +GFV+Y +P A+ AI Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111 Query: 346 MNG 338 +NG Sbjct: 112 LNG 114 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ + + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 343 NGF 335 NG+ Sbjct: 364 NGY 366
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 57.4 bits (137), Expect = 4e-08 Identities = 23/64 (35%), Positives = 42/64 (65%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +EL F ++GR+I++++ VD+ TG S+ GF+ +D + A+ AI Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Query: 349 MMNG 338 +NG Sbjct: 185 GLNG 188 Score = 52.8 bits (125), Expect = 9e-07 Identities = 25/63 (39%), Positives = 36/63 (57%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ +EL F G + S K+ DK TG S +GFV+Y +P A+ AI Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 346 MNG 338 +NG Sbjct: 100 LNG 102 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ + + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 343 NGF 335 NG+ Sbjct: 339 NGY 341
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 57.4 bits (137), Expect = 4e-08 Identities = 23/64 (35%), Positives = 42/64 (65%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +EL F ++GR+I++++ VD+ TG S+ GF+ +D + A+ AI Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184 Query: 349 MMNG 338 +NG Sbjct: 185 GLNG 188 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ +E F G + S K+ DK TG S +GFV+Y +P A+ AI Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 346 MNG 338 +NG Sbjct: 100 LNG 102 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ + + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 343 NGF 335 NG+ Sbjct: 352 NGY 354
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 57.4 bits (137), Expect = 4e-08 Identities = 23/64 (35%), Positives = 42/64 (65%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +EL F ++GR+I++++ VD+ TG S+ GF+ +D + A+ AI Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Query: 349 MMNG 338 +NG Sbjct: 185 GLNG 188 Score = 50.4 bits (119), Expect = 5e-06 Identities = 25/63 (39%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL ++PQ +EL F G + S K+ DK TG S +GFV+Y +P A+ AI Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 346 MNG 338 +NG Sbjct: 100 LNG 102 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ + + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 343 NGF 335 NG+ Sbjct: 338 NGY 340
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 57.4 bits (137), Expect = 4e-08 Identities = 23/64 (35%), Positives = 42/64 (65%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +EL F ++GR+I++++ VD+ TG S+ GF+ +D + A+ AI Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Query: 349 MMNG 338 +NG Sbjct: 185 GLNG 188 Score = 52.8 bits (125), Expect = 9e-07 Identities = 25/63 (39%), Positives = 36/63 (57%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ +EL F G + S K+ DK TG S +GFV+Y +P A+ AI Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 346 MNG 338 +NG Sbjct: 100 LNG 102 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ + + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 343 NGF 335 NG+ Sbjct: 338 NGY 340
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 57.4 bits (137), Expect = 4e-08 Identities = 23/64 (35%), Positives = 42/64 (65%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ +P+ +EL F ++GR+I++++ VD+ TG S+ GF+ +D + A+ AI Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Query: 349 MMNG 338 +NG Sbjct: 185 GLNG 188 Score = 52.8 bits (125), Expect = 9e-07 Identities = 25/63 (39%), Positives = 36/63 (57%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ +EL F G + S K+ DK TG S +GFV+Y +P A+ AI Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 346 MNG 338 +NG Sbjct: 100 LNG 102 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+Y++ + + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 343 NGF 335 NG+ Sbjct: 338 NGY 340
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 57.0 bits (136), Expect = 5e-08 Identities = 25/64 (39%), Positives = 40/64 (62%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL+I +P+ +++ D F RFGR+I+++V VD+ TG S+ F+ +D A+ AI Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165 Query: 349 MMNG 338 NG Sbjct: 166 SFNG 169 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/63 (39%), Positives = 33/63 (52%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ EL F G V SAK+ DK G S +GFV+Y A+ AI Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 Query: 346 MNG 338 +NG Sbjct: 81 LNG 83 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/63 (39%), Positives = 34/63 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +FIY++ Q+ + L F FG V + KV D T K FGFV+ N A AIA + Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 343 NGF 335 NG+ Sbjct: 306 NGY 308
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 56.6 bits (135), Expect = 6e-08 Identities = 26/63 (41%), Positives = 44/63 (69%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+++ ++P+E G+ EL F +FG + SA V D++ G+S+CFGFV+++ +A SA+ Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEK 288 Query: 346 MNG 338 MNG Sbjct: 289 MNG 291 Score = 52.0 bits (123), Expect = 2e-06 Identities = 25/64 (39%), Positives = 40/64 (62%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL++ ++ D++L + F +G V S+KV ++ G S+ FGFV+Y NP A A++ Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALS 390 Query: 349 MMNG 338 MNG Sbjct: 391 EMNG 394 Score = 50.1 bits (118), Expect = 6e-06 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ ++ L + F FG ++S KV +D TG SK +GFV ++ SAQ+AI Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195 Query: 346 MNG 338 +NG Sbjct: 196 LNG 198
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/96 (29%), Positives = 48/96 (50%) Frame = -3 Query: 631 PHNPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGR 452 P +P+ P + S + S+ NL+I +P DQ+L Q +G+ Sbjct: 30 PAHPMAPPSPSTTSS--NNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGK 87 Query: 451 VISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 ++S K +DK T K +GFV +D+P +AQ A++ + Sbjct: 88 IVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/63 (31%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL+I ++P +QEL + + FG+VIS ++ D ++G+S+ GF ++ ++ I Sbjct: 142 NLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGH 200 Query: 346 MNG 338 NG Sbjct: 201 FNG 203
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/63 (44%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + + L D F FG ++S KV VD ++G SK +GFV Y N SAQ AI Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183 Query: 346 MNG 338 +NG Sbjct: 184 LNG 186 Score = 46.6 bits (109), Expect = 7e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+++ ++ + D +L +AF +G++ SA V D G SK FGFV+++N A A+ Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVES 274 Query: 346 MNG 338 +NG Sbjct: 275 LNG 277 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/62 (32%), Positives = 34/62 (54%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 +L++ + D +L DAF + G V++ +V D T S +G+V++ NP A AI Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 346 MN 341 +N Sbjct: 97 LN 98
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/62 (45%), Positives = 40/62 (64%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI + D L DAF FG V+ AKV VD+ TG S+ FGFV++++ +A +AI+ M Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 Query: 343 NG 338 +G Sbjct: 97 DG 98
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 53.5 bits (127), Expect = 5e-07 Identities = 24/64 (37%), Positives = 39/64 (60%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANL+I +P+ +++ D F RFGR+I+++V VD+ TG S+ F+ +D A+ AI Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165 Query: 349 MMNG 338 G Sbjct: 166 SFIG 169 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/63 (39%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ +EL F G V SAK+ DK G S +GFV+Y A+ AI+ Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80 Query: 346 MNG 338 +NG Sbjct: 81 LNG 83 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/63 (38%), Positives = 34/63 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +FIY++ Q+ + L F FG V + KV D T K FGFV+ N + AIA + Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 343 NGF 335 NG+ Sbjct: 306 NGY 308
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/96 (28%), Positives = 51/96 (53%) Frame = -3 Query: 625 NPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVI 446 N + + G V F PR N+++ + ++F D++L + F+ +G++ Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKIT 210 Query: 445 SAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 S KV + K G SK FGFV+++ +A++A+ +NG Sbjct: 211 SYKV-MSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/63 (33%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ + D F FG ++S KV D+ G+SK +GFV ++ +A ++I Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDK 149 Query: 346 MNG 338 +NG Sbjct: 150 VNG 152 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/63 (36%), Positives = 34/63 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D L AF +G + SAKV D+ G SK FGFV ++ A A+ Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTE 346 Query: 346 MNG 338 +NG Sbjct: 347 LNG 349
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/63 (41%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N++I + ++ D+ L + F FG +S KV +D TG S+ FGFV+Y N AQ A++ Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSE 250 Query: 346 MNG 338 MNG Sbjct: 251 MNG 253 Score = 44.7 bits (104), Expect = 3e-04 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D L F +G + SAKV + G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ S+ +GFV ++ +A AI Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQT 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 53.5 bits (127), Expect = 5e-07 Identities = 31/96 (32%), Positives = 46/96 (47%) Frame = -3 Query: 625 NPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVI 446 N + + G V F R N++I + ++ D+ L D F +FG + Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218 Query: 445 SAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 S KV D++ G SK FGFVS++ AQ A+ MNG Sbjct: 219 SVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNG 253 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/63 (39%), Positives = 36/63 (57%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D+ L AF FG + SAKV ++ G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+F+ ++ + ++ L D FG ++S V D+ SK +GFV ++ +A+ AI Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKK 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/82 (34%), Positives = 41/82 (50%) Frame = -3 Query: 583 FSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSK 404 F R N++I + ++ D+ L D F +FG +S KV D++ G SK Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSK 231 Query: 403 CFGFVSYDNPVSAQSAIAMMNG 338 FGFVS++ AQ A+ MNG Sbjct: 232 GFGFVSFERHEDAQKAVDEMNG 253 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 46.6 bits (109), Expect = 7e-05 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ SK +GFV ++ +A+ AI Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/82 (34%), Positives = 41/82 (50%) Frame = -3 Query: 583 FSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSK 404 F R N++I + ++ D+ L D F +FG +S KV D++ G SK Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSK 231 Query: 403 CFGFVSYDNPVSAQSAIAMMNG 338 FGFVS++ AQ A+ MNG Sbjct: 232 GFGFVSFERHEDAQKAVDEMNG 253 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 46.6 bits (109), Expect = 7e-05 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ SK +GFV ++ +A+ AI Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/82 (34%), Positives = 39/82 (47%) Frame = -3 Query: 583 FSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSK 404 F R N++I + +E D+ L + F +FG+ +S KV D G SK Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSK 231 Query: 403 CFGFVSYDNPVSAQSAIAMMNG 338 FGFVSY+ A A+ MNG Sbjct: 232 GFGFVSYEKHEDANKAVEEMNG 253 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/63 (39%), Positives = 36/63 (57%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL+I ++ D++L F FG + SAKV ++ G SK FGFV + +P A A+ Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 43.5 bits (101), Expect = 6e-04 Identities = 22/63 (34%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ SK + FV ++ +A AI Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/62 (43%), Positives = 34/62 (54%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NLFI ++ E D+ L F FG + SAK+ D+ G SK FGFV Y P A A+ Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTE 423 Query: 346 MN 341 MN Sbjct: 424 MN 425 Score = 50.1 bits (118), Expect = 6e-06 Identities = 25/63 (39%), Positives = 41/63 (65%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ ++ L D F FG+++S KV VD+ G++K +GFV +D+ SA +AI Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEH 227 Query: 346 MNG 338 +NG Sbjct: 228 VNG 230 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N++I ++ E +QE SD F +FG + S + D+ + FGFV+Y N AQ A+ Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320 Query: 346 MN 341 +N Sbjct: 321 LN 322
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/63 (39%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N++I + ++ D+ L + F FG +S KV +D + G S+ FGFV+Y N AQ A+ Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTE 250 Query: 346 MNG 338 MNG Sbjct: 251 MNG 253 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/63 (34%), Positives = 32/63 (50%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D L F +G + S KV + G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/63 (34%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ ++ L D F FG ++S KV D+ S+ +GFV ++ +A AI Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAIQT 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 52.0 bits (123), Expect = 2e-06 Identities = 24/63 (38%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ + E +++ AF FG++ A+V D ATG SK +GFVS+ N + A++AI Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174 Query: 346 MNG 338 M G Sbjct: 175 MGG 177 Score = 30.0 bits (66), Expect = 6.4 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 DQ + F FG+++ +VF +K + FV + SA AI +NG Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHAIVSVNG 279
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 52.0 bits (123), Expect = 2e-06 Identities = 24/63 (38%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ + E +++ AF FG++ A+V D ATG SK +GFVS+ N + A++AI Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157 Query: 346 MNG 338 M G Sbjct: 158 MGG 160 Score = 30.0 bits (66), Expect = 6.4 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 DQ + F FG+++ +VF +K + FV + SA AI +NG Sbjct: 218 DQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHAIVSVNG 262
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 52.0 bits (123), Expect = 2e-06 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N++I + ++ D+ L + F FG +S KV +D + G S+ FGFV+Y N AQ A++ Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSE 250 Query: 346 MNG 338 MNG Sbjct: 251 MNG 253 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D L F +G + SAKV + G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 43.5 bits (101), Expect = 6e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ S+ +GFV ++ +A AI Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQT 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/82 (32%), Positives = 41/82 (50%) Frame = -3 Query: 583 FSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSK 404 F R N++I + ++ D+ L + F +FG +S KV D++ G SK Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSK 231 Query: 403 CFGFVSYDNPVSAQSAIAMMNG 338 FGFVS++ AQ A+ MNG Sbjct: 232 GFGFVSFERHEDAQKAVDEMNG 253 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 46.6 bits (109), Expect = 7e-05 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ SK +GFV ++ +A+ AI Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 19/84 (22%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFV-------------------DKATGSS 407 +NL++ HIP + D++L D ++ FG +IS KV D GSS Sbjct: 540 SNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSS 599 Query: 406 KCFGFVSYDNPVSAQSAIAMMNGF 335 + +GFVS+++P+ A AI +G+ Sbjct: 600 RGYGFVSFESPLDAAKAILNTDGY 623 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+F+ I + ELS F ++G ++S K+ DK G +GF+SY A I Sbjct: 196 NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKE 255 Query: 346 MNG 338 +NG Sbjct: 256 LNG 258
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/63 (38%), Positives = 42/63 (66%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+++ ++P+E D EL F ++G + SA V D++ G+S+ FGFV++ +P +A A+ Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS-GNSRSFGFVNFVSPEAAAVAVEK 284 Query: 346 MNG 338 MNG Sbjct: 285 MNG 287 Score = 49.7 bits (117), Expect = 8e-06 Identities = 24/64 (37%), Positives = 39/64 (60%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 +NL++ ++ D++L + F +G V S KV ++ + G S+ FGFV+Y NP A A+ Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMK 386 Query: 349 MMNG 338 MNG Sbjct: 387 EMNG 390 Score = 46.6 bits (109), Expect = 7e-05 Identities = 23/63 (36%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ ++ L + F FG ++S KV +D G SK +GFV ++ +AQ+AI Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 191 Query: 346 MNG 338 +NG Sbjct: 192 LNG 194
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.6 bits (122), Expect = 2e-06 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N++I + ++ D+ L + F +FG +S KV D++ G SK FGFVS++ AQ A+ Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250 Query: 346 MNG 338 MNG Sbjct: 251 MNG 253 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 46.6 bits (109), Expect = 7e-05 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ SK +GFV ++ +A+ AI Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 51.2 bits (121), Expect = 3e-06 Identities = 25/63 (39%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ N A++AI Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166 Query: 346 MNG 338 M G Sbjct: 167 MGG 169 Score = 30.4 bits (67), Expect = 4.9 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 +Q + F FG+++ +VF DK + FV + + SA AI +NG Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFSSHESAAHAIVSVNG 271
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 50.8 bits (120), Expect = 3e-06 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL+I + DQ+L Q +G+++S K +DK T K +GFV +D+P SAQ A+ Sbjct: 59 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTA 118 Query: 346 M 344 + Sbjct: 119 L 119 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL+I ++P +QEL + FG+VIS ++ D +G+S+ GF ++ ++ I Sbjct: 138 NLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEKCEAIITH 196 Query: 346 MNG 338 NG Sbjct: 197 FNG 199
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 50.4 bits (119), Expect = 5e-06 Identities = 24/52 (46%), Positives = 33/52 (63%) Frame = -3 Query: 493 GDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 GD EL F +FG VI +K+ D+ TG S+ FGFV++ + S + AI MNG Sbjct: 18 GDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNG 69
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 50.1 bits (118), Expect = 6e-06 Identities = 24/63 (38%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ + + +++ AF FGR+ A+V D ATG SK +GFVS+ N A++AI Sbjct: 107 HVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166 Query: 346 MNG 338 M G Sbjct: 167 MGG 169 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 +Q + F FG+++ +VF DK + FV +++ SA AI +NG Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAHAIVSVNG 271
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 49.7 bits (117), Expect = 8e-06 Identities = 22/61 (36%), Positives = 36/61 (59%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL+I + DQ+L Q +G+++S K +DK T K +GFV +D+P +AQ A+ Sbjct: 57 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 116 Query: 346 M 344 + Sbjct: 117 L 117 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL+I ++P +QEL + FG+VIS ++ D +G+S+ GF ++ ++ I Sbjct: 136 NLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITH 194 Query: 346 MNG 338 NG Sbjct: 195 FNG 197
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 49.3 bits (116), Expect = 1e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ +IP E +++L D F G V+S ++ D+ TG K +GF Y + +A SA+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 346 MNG 338 +NG Sbjct: 77 LNG 79
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/82 (31%), Positives = 38/82 (46%) Frame = -3 Query: 583 FSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSK 404 F R N++I + + D+ L + F ++G +S KV D G SK Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSK 231 Query: 403 CFGFVSYDNPVSAQSAIAMMNG 338 FGFVS++ AQ A+ MNG Sbjct: 232 GFGFVSFERHEDAQKAVDEMNG 253 Score = 46.2 bits (108), Expect = 9e-05 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 46.2 bits (108), Expect = 9e-05 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ SK +GFV ++ +A+ AI Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDK 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 49.3 bits (116), Expect = 1e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ +IP E +++L D F G V+S ++ D+ TG K +GF Y + +A SA+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 346 MNG 338 +NG Sbjct: 77 LNG 79
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ +IP E +++L D F G V+S ++ D+ TG K +GF Y + +A SA+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 346 MNG 338 +NG Sbjct: 77 LNG 79
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ +IP E +++L D F G V+S ++ D+ TG K +GF Y + +A SA+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 346 MNG 338 +NG Sbjct: 77 LNG 79
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ +IP E +++L D F G V+S ++ D+ TG K +GF Y + +A SA+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 346 MNG 338 +NG Sbjct: 77 LNG 79
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ +IP E +++L D F G V+S ++ D+ TG K +GF Y + +A SA+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 346 MNG 338 +NG Sbjct: 77 LNG 79
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 48.5 bits (114), Expect = 2e-05 Identities = 26/89 (29%), Positives = 43/89 (48%) Frame = -3 Query: 604 VNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVD 425 + VN A PR + +++ +IP + D L F G+V+SA+V D Sbjct: 168 LTVNKAA--PRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFD 225 Query: 424 KATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 + +G S+ FGFV+ + AIA ++G Sbjct: 226 RESGRSRGFGFVTMSSEAEMSEAIANLDG 254 Score = 38.1 bits (87), Expect = 0.023 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A LF+ ++P + + L+ FQ+ G V A+V ++ T S+ FGFV+ A A+ Sbjct: 97 AKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 156 Query: 349 MMNGF 335 + + + Sbjct: 157 LYSQY 161
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/51 (45%), Positives = 32/51 (62%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 ++ L AF FG+VI +KV D+ TG S+ FGFV++ + S AI MNG Sbjct: 21 NETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNG 71
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/59 (40%), Positives = 35/59 (59%) Frame = -3 Query: 517 IYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMN 341 + ++PQE + EL D F + GRVI + DK TG K F FV++++ A AIA +N Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELN 238
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/62 (40%), Positives = 36/62 (58%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L+I + + L DAF F V A+V +K TG S+ +GFV++ + SA SAI+ M Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92 Query: 343 NG 338 NG Sbjct: 93 NG 94
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NLF+ + D+ L +AF+ F +S V D TGSS+ +GFVS+ + AQ+A+ Sbjct: 162 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 221 Query: 346 MNG--FXXXXXXXXXXXKRDNNNKHS 275 M G KRDNNN ++ Sbjct: 222 MQGQDLNGRPLRINWAAKRDNNNNNN 247
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ +IP D L F G+V+SA+V D+ TG S+ FGFV+ + AIA + Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291 Query: 343 NG 338 +G Sbjct: 292 DG 293
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 46.6 bits (109), Expect = 7e-05 Identities = 21/51 (41%), Positives = 33/51 (64%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 D+ L AF ++G V+ +K+ D+ TG S+ FGFV++ + S + AI MNG Sbjct: 21 DRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNG 71
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 46.6 bits (109), Expect = 7e-05 Identities = 21/51 (41%), Positives = 32/51 (62%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 D+ L AF +FG + +K+ D+ TG S+ FGFV++ + S + AI MNG Sbjct: 19 DESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNG 69
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 46.6 bits (109), Expect = 7e-05 Identities = 21/62 (33%), Positives = 36/62 (58%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + GD++L F RFG+++S +V D+ TG S + F+ Y++ S ++A M Sbjct: 253 LFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKM 312 Query: 343 NG 338 G Sbjct: 313 QG 314
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 46.6 bits (109), Expect = 7e-05 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + +P A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352 Query: 346 MNG 338 MNG Sbjct: 353 MNG 355 Score = 46.6 bits (109), Expect = 7e-05 Identities = 25/82 (30%), Positives = 39/82 (47%) Frame = -3 Query: 583 FSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSK 404 F R N++I + ++ D+ L + F ++G +S KV D G S+ Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSR 231 Query: 403 CFGFVSYDNPVSAQSAIAMMNG 338 FGFVS++ AQ A+ MNG Sbjct: 232 GFGFVSFERHEDAQKAVDDMNG 253 Score = 46.2 bits (108), Expect = 9e-05 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S KV D+ SK +GFV ++ +A+ AI Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDK 157 Query: 346 MNG 338 MNG Sbjct: 158 MNG 160
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 46.6 bits (109), Expect = 7e-05 Identities = 23/63 (36%), Positives = 39/63 (61%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L D F FG ++S+K+ D+ G SK FGFV ++ +A+ AI Sbjct: 126 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDA 184 Query: 346 MNG 338 +NG Sbjct: 185 LNG 187 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/62 (35%), Positives = 36/62 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ +I E D++ + F +FG ++SA + D A G K FGFV+Y+ A A+ Sbjct: 219 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEA 277 Query: 346 MN 341 +N Sbjct: 278 LN 279 Score = 43.5 bits (101), Expect = 6e-04 Identities = 23/62 (37%), Positives = 33/62 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NLF+ ++ D++L + F +G + SAKV + G SK FGFV + P A AI Sbjct: 322 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEATKAITE 380 Query: 346 MN 341 N Sbjct: 381 KN 382
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 46.2 bits (108), Expect = 9e-05 Identities = 21/51 (41%), Positives = 31/51 (60%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 D L F G+V+ A+V D+ +G SK FGFV+YD+ Q+AI ++G Sbjct: 217 DMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ ++P +L+ F+ G V +V DK TG S+ FGFV+ + ++A Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 343 NGF 335 NG+ Sbjct: 153 NGY 155
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 45.8 bits (107), Expect = 1e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 ++ L AF +FG ++ +K+ D+ TG S+ FGFV++ + S + AI MNG Sbjct: 21 ERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNG 71
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/89 (28%), Positives = 42/89 (47%) Frame = -3 Query: 604 VNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVD 425 + VN A PR + +++ ++P + L F G+V+SA+V D Sbjct: 126 LTVNKAA--PRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSD 183 Query: 424 KATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 + TG S+ FGFV+ + AIA ++G Sbjct: 184 RETGRSRGFGFVTMSSESEVNDAIAALDG 212 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/65 (30%), Positives = 37/65 (56%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A LF+ ++P + ++L+ F G V A+V ++ T S+ FGFV+ A+ A+ Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114 Query: 349 MMNGF 335 ++NG+ Sbjct: 115 LLNGY 119
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 45.8 bits (107), Expect = 1e-04 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ+ D+EL F+ G + + ++ D TG S + FV + + + AQ+AI Sbjct: 86 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKS 145 Query: 346 MNG 338 +NG Sbjct: 146 LNG 148
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ+ D+EL F+ G + + ++ D TG S + FV + + + AQ+AI Sbjct: 103 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKT 162 Query: 346 MNG 338 +NG Sbjct: 163 VNG 165
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/51 (39%), Positives = 32/51 (62%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 ++ L +AF +G ++ +KV D+ TG S+ FGFV++ + S AI MNG Sbjct: 21 NESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNG 71
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/51 (41%), Positives = 33/51 (64%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 D+ L AF ++G VI +K+ D+ TG S+ FGFV++ + + + AI MNG Sbjct: 21 DRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNG 71
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/60 (36%), Positives = 33/60 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + D++L F RFG++IS +V DK TG S + F+ +DN S + A M Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 45.1 bits (105), Expect = 2e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 D++L F +FG VI +K+ D+ +G S+ FGFV++ + + + AI MNG Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ+ D+EL F+ G + + ++ D TG S +GFV + + A AI Sbjct: 79 NLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINN 138 Query: 346 MNG 338 +NG Sbjct: 139 LNG 141 Score = 42.7 bits (99), Expect = 0.001 Identities = 16/62 (25%), Positives = 36/62 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ + D++L F ++G+++ + DK TG+ + F+ ++ AQ AI+ Sbjct: 165 NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISA 224 Query: 346 MN 341 +N Sbjct: 225 LN 226
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/63 (31%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ+ D+EL F+ G + + ++ D TG S + FV + + + +Q AI + Sbjct: 128 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 187 Query: 346 MNG 338 +NG Sbjct: 188 LNG 190
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/63 (31%), Positives = 37/63 (58%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ+ D+EL F+ G + + ++ D TG S + FV + + + +Q AI + Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185 Query: 346 MNG 338 +NG Sbjct: 186 LNG 188
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/63 (31%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L++ H+P+ + +L F++FG+V+ +V K TG SK +GFV ++ A+ M Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 343 NGF 335 N + Sbjct: 107 NNY 109
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI + E ++ L F ++GR++ + D+ T S+ F FV++++P A+ A M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 343 NG 338 NG Sbjct: 70 NG 71
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/63 (36%), Positives = 35/63 (55%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ANLF+ ++ ++ L D F G+++ A G SK +GFVSYD+ +A +AI Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158 Query: 349 MMN 341 MN Sbjct: 159 AMN 161
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/62 (37%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI + E + L AF ++GR+ V D+ T S+ FGFV+++N A+ A+ M Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 343 NG 338 NG Sbjct: 67 NG 68
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 43.9 bits (102), Expect = 4e-04 Identities = 20/62 (32%), Positives = 37/62 (59%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+F+ ++P+ + L D F++FG ++S KV G S+ +GFV ++ +A +AI Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKV-ATLEDGKSRGYGFVQFEQEDAAHAAIQT 171 Query: 346 MN 341 +N Sbjct: 172 LN 173 Score = 37.0 bits (84), Expect = 0.052 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ ++ + + L + F FG+++S + D+ + + FV++DNP A+ A Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAET 260 Query: 346 MNG 338 +NG Sbjct: 261 VNG 263 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/63 (26%), Positives = 32/63 (50%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A+L++ + + L DAF F + S ++ D ++G S C+G+ ++ + A AI Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83 Query: 349 MMN 341 N Sbjct: 84 KKN 86
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 43.5 bits (101), Expect = 6e-04 Identities = 24/63 (38%), Positives = 32/63 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +FIY++ E + L F FG V S K+ D T K +GFVS N A AI + Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 343 NGF 335 NG+ Sbjct: 464 NGY 466 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 13/76 (17%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKAT-------------GSSKCFGFVS 386 NL + ++PQ + E+ F G + S K+ DK+ G S +GFV+ Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209 Query: 385 YDNPVSAQSAIAMMNG 338 Y P A+ A+ ++NG Sbjct: 210 YVRPQDAEQAVNVLNG 225 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGS-SKCFGFVSYDNPVSAQSAI 353 ANL++ +P+ QEL F FG +I++++ + + +K GF+ +D A AI Sbjct: 248 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 307 Query: 352 AMMNG 338 +NG Sbjct: 308 IALNG 312
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 43.5 bits (101), Expect = 6e-04 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L++ + + L F+ FGR+ S ++ +D TG SK +GF+++ + A+ A+ + Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 343 NGF 335 NGF Sbjct: 312 NGF 314
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 43.5 bits (101), Expect = 6e-04 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L++ + + L F+ FGR+ S ++ +D TG SK +GF+++ + A+ A+ + Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 343 NGF 335 NGF Sbjct: 312 NGF 314
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 43.5 bits (101), Expect = 6e-04 Identities = 21/62 (33%), Positives = 34/62 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L++ ++ D L + F G+V+ A+V D+ +G SK FGFV+ + Q AI + Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 343 NG 338 NG Sbjct: 319 NG 320 Score = 40.0 bits (92), Expect = 0.006 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ ++ +L+ F+ G V +V DK TG S+ FGFV+ ++A Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 343 NGF 335 NG+ Sbjct: 161 NGY 163
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 43.5 bits (101), Expect = 6e-04 Identities = 19/49 (38%), Positives = 31/49 (63%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDN 377 LF+ I +E + +L D F+++G V+SA + VDK T + F FV +D+ Sbjct: 110 LFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDD 158
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 43.5 bits (101), Expect = 6e-04 Identities = 24/63 (38%), Positives = 32/63 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +FIY++ E + L F FG V S K+ D T K +GFVS N A AI + Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 343 NGF 335 NG+ Sbjct: 500 NGY 502 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 13/76 (17%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKAT-------------GSSKCFGFVS 386 NL + ++PQ + E+ F G + S K+ DK+ G S +GFV+ Sbjct: 186 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 245 Query: 385 YDNPVSAQSAIAMMNG 338 Y P A+ A+ ++NG Sbjct: 246 YVRPQDAEQAVNVLNG 261 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGS-SKCFGFVSYDNPVSAQSAI 353 ANL++ +P+ QEL F FG +I++++ + + +K GF+ +D A AI Sbjct: 284 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 343 Query: 352 AMMNG 338 +NG Sbjct: 344 IALNG 348
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 43.5 bits (101), Expect = 6e-04 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + +Q L D F FG + V D+ T S+ FGF+++ NP A A+ M Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 343 NG 338 NG Sbjct: 68 NG 69
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 43.1 bits (100), Expect = 7e-04 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+ ++P L++ F+R G V +V DK TG S+ FGFV+ + ++A Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 343 NGF 335 NG+ Sbjct: 149 NGY 151 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -3 Query: 490 DQE-LSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 DQ+ L F G+V+ AKV D+ +G S+ FGFV+Y + +AI ++G Sbjct: 200 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 251
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 43.1 bits (100), Expect = 7e-04 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + + +Q L F ++G++ V D+ T S+ FGFV+++N A+ A+ M Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 343 NG 338 NG Sbjct: 68 NG 69
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 43.1 bits (100), Expect = 7e-04 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + + +Q L F ++G++ V D+ T S+ FGFV+++N A+ A+ M Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 343 NG 338 NG Sbjct: 68 NG 69
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 43.1 bits (100), Expect = 7e-04 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDN 377 LF+ + + +Q + D FQ FG ++ + +DK TG + F FV +D+ Sbjct: 124 LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDD 172
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 42.7 bits (99), Expect = 0.001 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI + E ++ L F ++GR++ + D+ T S+ F FV++++P A+ M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 343 NG 338 NG Sbjct: 70 NG 71
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + +Q L D F FG + V D+ T S+ FGF+++ NP A A+ M Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 343 NG 338 NG Sbjct: 68 NG 69
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + + +Q L F ++G++ V D+ T S+ FGFV+++N A+ A+ M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 343 NG 338 NG Sbjct: 68 NG 69
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + + +Q L F ++G++ V D+ T S+ FGFV+++N A+ A+ M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 343 NG 338 NG Sbjct: 68 NG 69
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + + +Q L F ++G++ V D+ T S+ FGFV+++N A+ A+ M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 343 NG 338 NG Sbjct: 68 NG 69
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISA-KVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 AN+FI ++ E ++ L D F FG ++ K+ D TG+SK + F+++ + ++ +AI Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159 Query: 352 AMMNG 338 MNG Sbjct: 160 EAMNG 164 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/63 (25%), Positives = 34/63 (53%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A +++ + ++ + L + F + G V++ + D+ TG + +GFV + + A AI Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72 Query: 349 MMN 341 +MN Sbjct: 73 IMN 75
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFV---SYDNPVSAQS 359 ++L + +P + +Q+L D F FG V+ +V D TG SK FGFV Y+ V S Sbjct: 104 SDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 163 Query: 358 AIAMMNG 338 M++G Sbjct: 164 QRHMIDG 170
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/49 (36%), Positives = 32/49 (65%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDN 377 +F+ I + +E + F ++G +I A++ +DK TG S+ FGFV+YD+ Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 293 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/86 (26%), Positives = 38/86 (44%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +FI + + + L + F ++G V K+ D ATG S+ FGF+S++ P S + Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ 220 Query: 343 NGFXXXXXXXXXXXKRDNNNKHSKPF 266 + RD +K K F Sbjct: 221 HILDGKVIDPKRAIPRDEQDKTGKIF 246
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = -3 Query: 481 LSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 L AF +G V+ +K+ +D+ T S+ FGFV++ + +SAI MNG Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNG 50
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/62 (32%), Positives = 34/62 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI + E ++ L F ++GR++ + D+ T S+ F FV+ ++P A+ A M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 343 NG 338 NG Sbjct: 70 NG 71
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + D++L F RFG ++S +V DK TG S + F+ ++N + A M Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 343 NG 338 G Sbjct: 310 QG 311
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 D L + F G V+ AKV D+ +G S+ FGFV+Y + AI +NG Sbjct: 220 DLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNG 270 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ ++P L+ F+R G V +V DK TG S+ FGFV+ ++A Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 343 NGF 335 NG+ Sbjct: 149 NGY 151
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL + ++PQ+ D+EL F+ G + + ++ D TG S + FV + +Q AI Sbjct: 111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKS 170 Query: 346 MNG 338 +NG Sbjct: 171 LNG 173
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 D L + F G V+ AKV D+ +G S+ FGFV+Y + AI +NG Sbjct: 221 DLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNG 271 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ ++P L+ F+R G V +V DK +G S+ FGFV+ ++A Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 343 NGF 335 NG+ Sbjct: 150 NGY 152
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + D++L F RFG ++S +V DK TG S + F+ ++N + A M Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 343 NG 338 G Sbjct: 310 QG 311
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/62 (30%), Positives = 38/62 (61%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 ++I ++P G+ ++ + + FG ++S ++ + A GSSK F F + NP A+ AI+ + Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371 Query: 343 NG 338 +G Sbjct: 372 DG 373
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ +P F ++ELS F +FG + ++ +K TG+S+ +GF+ + N A A M Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152 Query: 343 NGF 335 N + Sbjct: 153 NNY 155
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/62 (29%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ ++P + + L F G+V+ A+V D+ TG S+ FGFV+ + AI+ + Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 343 NG 338 +G Sbjct: 306 DG 307
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/62 (30%), Positives = 33/62 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + D++L F RFG+++S +V DK TG S + F+ +++ + A M Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309 Query: 343 NG 338 G Sbjct: 310 QG 311
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 41.6 bits (96), Expect = 0.002 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISA-KVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 AN+F+ ++ E ++ L D F FG ++ K+ D +G+SK F F+++ + ++ +A+ Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159 Query: 352 AMMNG--FXXXXXXXXXXXKRDNNNKHSKPF*QKIICDDNAVLFPVHICQIVDRDADCFP 179 MNG KRD+ + ++++ N LFP DR F Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNP-LFP------KDRPHQVFS 212 Query: 178 SWPCGV 161 P GV Sbjct: 213 DVPLGV 218
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 41.2 bits (95), Expect = 0.003 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFV---SYDNPVSAQS 359 ++L + +P + +Q+L + F FG V+ +V D TG SK FGFV Y+ V S Sbjct: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 163 Query: 358 AIAMMNG 338 M++G Sbjct: 164 QRHMIDG 170
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 40.8 bits (94), Expect = 0.004 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A + + ++ ++ + +L + F+ FG + + DK TG SK F F+S+ A AIA Sbjct: 239 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 298 Query: 349 MMNGF 335 ++GF Sbjct: 299 GVSGF 303
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 40.8 bits (94), Expect = 0.004 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A + + ++ ++ + +L + F+ FG + + DK TG SK F F+S+ A AIA Sbjct: 239 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 298 Query: 349 MMNGF 335 ++GF Sbjct: 299 GVSGF 303
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + D++L F RFG+++S +V D+ TG S + F+ +++ S + A + M Sbjct: 255 LFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKM 314 Query: 343 N 341 + Sbjct: 315 D 315
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 40.8 bits (94), Expect = 0.004 Identities = 21/62 (33%), Positives = 38/62 (61%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+ ++P + Q+L + F + G V+ A++ ++ G SK G V +D+P SA+ A +M Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFDSPESAEKACRIM 582 Query: 343 NG 338 NG Sbjct: 583 NG 584
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 40.4 bits (93), Expect = 0.005 Identities = 17/61 (27%), Positives = 36/61 (59%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+ +IP + +Q++++ F + G V + K+ +D TGS K +GF + + + A+ + Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 343 N 341 N Sbjct: 69 N 69
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 40.4 bits (93), Expect = 0.005 Identities = 20/56 (35%), Positives = 36/56 (64%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + ++ ++ L ++F+ ISA++ D+ TGSSK FGFV + +P A++A Sbjct: 555 LFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 40.4 bits (93), Expect = 0.005 Identities = 17/56 (30%), Positives = 32/56 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 +FI +P + + EL F +FG + ++ DK T SK + F+ + +P+S++ A Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMA 164
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 40.4 bits (93), Expect = 0.005 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 LF+ + ++ L + F +FG V+S K+ DK TG + F FV +D+ + AI Sbjct: 125 LFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 30.0 bits (66), Expect = 6.4 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LFI + ++ L + ++G+V+ V D AT S+ FGF++Y + A Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA 89
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 40.4 bits (93), Expect = 0.005 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 +LF+ I + EL F +FG V ++ + T +S+ FGF+S+ A SAI Sbjct: 102 DLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDN 161 Query: 346 MN 341 +N Sbjct: 162 LN 163
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 + LF+ ++P + + +L F +FG++ V D + +SK F +V Y P +A A Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYK 360 Query: 349 MMNG 338 ++G Sbjct: 361 ELDG 364
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 40.0 bits (92), Expect = 0.006 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 ++I HIP+ + +L + F +FG V ++ K TG+SK + +V Y+ A+ M Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTM 102 Query: 343 NGF 335 N + Sbjct: 103 NNY 105
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 40.0 bits (92), Expect = 0.006 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + D++L F RFG+++S +V DK +G S + F+ +D +A+ A M Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKM 307
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 40.0 bits (92), Expect = 0.006 Identities = 26/98 (26%), Positives = 41/98 (41%) Frame = -3 Query: 631 PHNPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGR 452 PH+ +PG++ N + P LFI +P D ++ + FG Sbjct: 229 PHDYQPLPGMSENPSVYVP----GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 284 Query: 451 VISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 + + + D ATG SK + F Y + AIA +NG Sbjct: 285 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 322
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 40.0 bits (92), Expect = 0.006 Identities = 26/98 (26%), Positives = 41/98 (41%) Frame = -3 Query: 631 PHNPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGR 452 PH+ +PG++ N + P LFI +P D ++ + FG Sbjct: 229 PHDYQPLPGMSENPSVYVP----GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 284 Query: 451 VISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 + + + D ATG SK + F Y + AIA +NG Sbjct: 285 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 322
>ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP)| Length = 443 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = -3 Query: 433 FVDKATGSSKCFGFVSYDNPVSAQSAIAMMNGF 335 F + G + FGFVSYDN +SAQ AI MNG+ Sbjct: 389 FKETVLGRNSGFGFVSYDNVISAQHAIQFMNGY 421
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/61 (32%), Positives = 35/61 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L++ ++ Q L DAF +SAKV D+++G S+ FGF+++ + + SA+ M Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278 Query: 343 N 341 N Sbjct: 279 N 279
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQ-RFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 +LF+ + + +L FQ RF V + +V D TGSS+CFGFV + + + A+ Sbjct: 193 SLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALI 252 Query: 349 MMNG 338 M+G Sbjct: 253 EMSG 256
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 LFI + + + L F+ FG + V V+ T S+CFGFV+Y N A +A+A Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66 Score = 38.5 bits (88), Expect = 0.018 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + + + +L + F +FG V A++ DK +G + FGFV + N +A A Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/65 (33%), Positives = 36/65 (55%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A L + ++ + ++EL D F+RFG + + DK TG +K F FVSY + A A Sbjct: 202 ATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARD 261 Query: 349 MMNGF 335 ++G+ Sbjct: 262 RLDGY 266
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L + +IP F D +L F +FG+++ ++ ++ SK FGFV+++N A A + Sbjct: 123 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKL 180 Query: 343 NG 338 +G Sbjct: 181 HG 182
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -3 Query: 490 DQE-LSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 DQ+ L F G+V+ AKV D+ +G S+ FGFV+Y + +AI ++G Sbjct: 206 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257 Score = 39.3 bits (90), Expect = 0.011 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = -3 Query: 481 LSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNGF 335 L++ F+R G V +V DK TG S+ FGFV+ + ++A NG+ Sbjct: 103 LAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L + +IP F D +L F +FG+++ ++ ++ SK FGFV+++N A A + Sbjct: 118 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKL 175 Query: 343 NG 338 +G Sbjct: 176 HG 177
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/63 (38%), Positives = 34/63 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +FI + + EL FQ FG ++ K+ V KC GFV Y + +SA++AIA M Sbjct: 315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKIPV------GKCCGFVQYVDRLSAEAAIAGM 368 Query: 343 NGF 335 GF Sbjct: 369 QGF 371 Score = 36.2 bits (82), Expect = 0.089 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAF-QRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 ++F+ + + +L + F R+ AK+ D+ TG SK +GFV + N Q A++ Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223 Query: 349 MMNG 338 M G Sbjct: 224 EMQG 227
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L + +IP F D +L F +FG+++ ++ ++ SK FGFV+++N A A + Sbjct: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKL 176 Query: 343 NG 338 +G Sbjct: 177 HG 178
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 39.3 bits (90), Expect = 0.011 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L + +I D+++ F+ FG + + D SK FG++ Y NP+SA++A+ M Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKM 400 Query: 343 NGF 335 NGF Sbjct: 401 NGF 403
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 39.3 bits (90), Expect = 0.011 Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA-- 350 L++ + ++ + L++ F ++G V +++ +DKAT + FGFV++D+ S + Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 175 Query: 349 --MMNG 338 M+NG Sbjct: 176 SHMVNG 181
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 39.3 bits (90), Expect = 0.011 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Frame = -3 Query: 610 PGVNVNSVAFSPRSNXXXXXXXXXXXGAN-LFIYHIPQEFGDQELSDAFQRFGRVISAKV 434 P + V +V S+ GA L++ +IP+ + EL + G + A+V Sbjct: 56 PLLKVRAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEV 115 Query: 433 FVDKATGSSKCFGFVSYDNPVSAQSAIAMMN 341 DK +G S+ FGFV+ A + I +N Sbjct: 116 MYDKYSGRSRRFGFVTMKTVEDANAVIEKLN 146 Score = 37.0 bits (84), Expect = 0.052 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 ++I ++ + ++ L D F G+V+ AKV T S FGFVS+ + ++AI + Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245 Query: 343 N 341 N Sbjct: 246 N 246
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 38.9 bits (89), Expect = 0.014 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 +F+ IP G+ EL + F RFG V + D + FGF+++++ S A+ M Sbjct: 116 IFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 38.9 bits (89), Expect = 0.014 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 LFI ++P E EL D FQ FG V+ ++ + G FGFV +D+ Q ++ Sbjct: 340 LFIGNLPHEVDKSELKDFFQNFGNVVELRI---NSGGKLPNFGFVVFDDSEPVQKVLS 394
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 38.5 bits (88), Expect = 0.018 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = -3 Query: 508 IPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 IP+ + +++L + F+ +G + V +K TG SK G+V Y P A AI Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/62 (33%), Positives = 28/62 (45%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI P L D F RFG +I + S K G+V Y + +SA AI + Sbjct: 394 LFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYVKYADRMSANDAITTL 447 Query: 343 NG 338 +G Sbjct: 448 HG 449
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI ++P E+ F+ FG V + +DK T +SK FVS+ +P A +A Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAK 375 Query: 343 NG 338 +G Sbjct: 376 DG 377 Score = 33.1 bits (74), Expect = 0.76 Identities = 22/88 (25%), Positives = 39/88 (44%) Frame = -3 Query: 616 KVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVISAK 437 KV + V F+ R+ + I ++P E +++ D F G++ S + Sbjct: 690 KVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVR 749 Query: 436 VFVDKATGSSKCFGFVSYDNPVSAQSAI 353 + K +++ FGFV Y AQSA+ Sbjct: 750 L-PKKFDNTTRGFGFVEYSTVREAQSAM 776
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L F FG ++S KV D SK + +V +D+ +A AI Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWH 164 Query: 346 MNG 338 MNG Sbjct: 165 MNG 167
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L F FG ++S KV D SK + +V +D+ +A AI Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWH 164 Query: 346 MNG 338 MNG Sbjct: 165 MNG 167
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L F FG ++S KV D SK + +V +D+ +A AI Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWH 164 Query: 346 MNG 338 MNG Sbjct: 165 MNG 167
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L F FG ++S KV D SK + +V +D+ +A AI Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWH 164 Query: 346 MNG 338 MNG Sbjct: 165 MNG 167
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L F FG ++S KV D SK + +V +D+ +A AI Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWH 164 Query: 346 MNG 338 MNG Sbjct: 165 MNG 167
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 N+FI ++ + ++ L F FG ++S KV D SK + +V +D+ +A AI Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWH 164 Query: 346 MNG 338 MNG Sbjct: 165 MNG 167
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 38.5 bits (88), Expect = 0.018 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + +L F RFG+++S +V DK TG S + F+ +D A+ A M Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 38.1 bits (87), Expect = 0.023 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = -3 Query: 508 IPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 IP+ + +++L + F+ +G + + +K TG SK G+V Y P A AI Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ P L D F RFG +I + S K G+V Y + SA AI + Sbjct: 394 LFVVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYVKYADRKSANEAITTL 447 Query: 343 NG 338 +G Sbjct: 448 HG 449
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 38.1 bits (87), Expect = 0.023 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = -3 Query: 508 IPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 IP+ + +++L + F+ +G + + +K TG SK G+V Y P A AI Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178 Score = 32.0 bits (71), Expect = 1.7 Identities = 21/62 (33%), Positives = 28/62 (45%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI P L D F RFG +I + S K G+ Y + +SA AIA + Sbjct: 394 LFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYAKYADRISANDAIATL 447 Query: 343 NG 338 +G Sbjct: 448 HG 449
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 38.1 bits (87), Expect = 0.023 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L++ + + L F+ FG++ + + D TG SK +GF+++ + A+ A+ + Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 343 NGF 335 NGF Sbjct: 325 NGF 327
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 38.1 bits (87), Expect = 0.023 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + D++L F RFG + S +V D TG S C+ F+ ++ + A M Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 343 N 341 + Sbjct: 302 D 302
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 38.1 bits (87), Expect = 0.023 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + D++L F RFG + S +V D TG S C+ F+ ++ + A M Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 343 N 341 + Sbjct: 302 D 302
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 38.1 bits (87), Expect = 0.023 Identities = 18/63 (28%), Positives = 34/63 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 ++I HIP+ + +L + F +FG V ++ K TG+SK + +V ++ A+ M Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTM 102 Query: 343 NGF 335 N + Sbjct: 103 NNY 105
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 37.7 bits (86), Expect = 0.031 Identities = 21/64 (32%), Positives = 35/64 (54%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A +++ +P + QEL + F RFGR+ KV+V + F FV YD+ A+ A+ Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRI--RKVWVARRPPG---FAFVEYDDVRDAEDAVR 57 Query: 349 MMNG 338 ++G Sbjct: 58 ALDG 61
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 37.7 bits (86), Expect = 0.031 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 +F+ IP G+ EL + F++FG V + D + FGF+++++ S A+ M Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 37.7 bits (86), Expect = 0.031 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 +F+ IP G+ EL + F++FG V + D + FGF+++++ S A+ M Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 37.7 bits (86), Expect = 0.031 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 A LF+ ++ E + EL F FG++ V D +SK F +V Y +P +A A Sbjct: 295 ARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYR 354 Query: 349 MMNG 338 ++G Sbjct: 355 NLDG 358 Score = 35.8 bits (81), Expect = 0.12 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 6/105 (5%) Frame = -3 Query: 631 PHNPLKVPGVNVNSVAFSPRSNXXXXXXXXXX-XGANLFIYHIPQEFGDQELSDAFQRFG 455 P NPL P S FS A LFI ++ +Q L +AF+ Sbjct: 559 PQNPL--PETKAVSQGFSTADTFAADEGDEEVMATATLFIKNLNFSTTNQSLIEAFRPLD 616 Query: 454 RVISAKVFVD---KATGS--SKCFGFVSYDNPVSAQSAIAMMNGF 335 +SA++ K G S FGF + AQ+A+A+MNG+ Sbjct: 617 GFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAALAVMNGY 661
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 37.7 bits (86), Expect = 0.031 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ I + ++++ F+ FG ++ K+ + + K +GF+ Y N + AIA M Sbjct: 229 IYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASM 288 Query: 343 NGF 335 N F Sbjct: 289 NLF 291 Score = 37.4 bits (85), Expect = 0.040 Identities = 21/62 (33%), Positives = 30/62 (48%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ I E + + AF FG + S + D T K F FV Y+ P AQ A+ M Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 343 NG 338 NG Sbjct: 192 NG 193
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 37.7 bits (86), Expect = 0.031 Identities = 15/57 (26%), Positives = 31/57 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +F+ + + ++L D F +FG V+ + +D TG S+ FGF+ + + S + + Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 126
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 37.4 bits (85), Expect = 0.040 Identities = 20/62 (32%), Positives = 34/62 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 L + +IP F D +L F++FG V ++ ++ SK FGFV+ + P A+ A + Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNER--GSKGFGFVTMERPQDAERARQEL 212 Query: 343 NG 338 +G Sbjct: 213 HG 214
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 37.4 bits (85), Expect = 0.040 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 LFI ++P E EL D FQ +G V+ ++ + G FGFV +D+ Q ++ Sbjct: 342 LFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFGFVVFDDSEPVQKVLS 396
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 37.0 bits (84), Expect = 0.052 Identities = 15/57 (26%), Positives = 31/57 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +F+ + + ++L D F +FG V+ + +D TG S+ FGF+ + + S + + Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 37.0 bits (84), Expect = 0.052 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ H+P + ++ F +FG V ++ K TG+SK + FV +++ A+ M Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106 Query: 343 NGF 335 N + Sbjct: 107 NNY 109
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 37.0 bits (84), Expect = 0.052 Identities = 13/63 (20%), Positives = 36/63 (57%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 ++F+ +I + +++ D F+ G++ + D+ TG+ K +G++ +++P + A+ + Sbjct: 65 SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQL 124 Query: 346 MNG 338 G Sbjct: 125 NGG 127
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 37.0 bits (84), Expect = 0.052 Identities = 20/82 (24%), Positives = 36/82 (43%) Frame = -3 Query: 622 PLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGRVIS 443 P K+ G V PR LF+ + + ++ L + F+ FG+++S Sbjct: 86 PHKIDGRTVEPKRAVPRQEIDSPNAGATVK--KLFVGGLRDDHDEECLREYFKDFGQIVS 143 Query: 442 AKVFVDKATGSSKCFGFVSYDN 377 + DK TG + F F+ +D+ Sbjct: 144 VNIVSDKDTGKKRGFAFIEFDD 165
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 37.0 bits (84), Expect = 0.052 Identities = 15/63 (23%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ ++P + ++E+ D F ++GR+ +VD +G F FV +++ A+ A+ Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRI----KYVDIKSGRGPAFAFVEFEDHRDAEDAVRAR 66 Query: 343 NGF 335 +G+ Sbjct: 67 DGY 69
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 36.6 bits (83), Expect = 0.068 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQ 362 LF+ ++P + + EL + F FG V+ ++ G FGFV +D+ Q Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQ 386
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 36.6 bits (83), Expect = 0.068 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQ 362 LF+ ++P + + EL + F FG V+ ++ G FGFV +D+ Q Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQ 386
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 36.6 bits (83), Expect = 0.068 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI + +E ++ L F + G + + D+ T S+ F F++++NP A++A M Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68 Query: 343 NG 338 NG Sbjct: 69 NG 70
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 36.2 bits (82), Expect = 0.089 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 LF+ + E + LS F RFG +I V + +G S+ FGFV++ +P + + Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVL 65 Score = 33.5 bits (75), Expect = 0.58 Identities = 14/54 (25%), Positives = 28/54 (51%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQ 362 +F+ +P + +L F R+G+V + D+ S+ FGF+S++ S + Sbjct: 98 VFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 36.2 bits (82), Expect = 0.089 Identities = 18/56 (32%), Positives = 35/56 (62%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + ++ ++ L ++F+ R A++ D+ TGSSK FGFV +++ A++A Sbjct: 576 LFVKGLSEDTTEETLKESFEGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAA 628
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 36.2 bits (82), Expect = 0.089 Identities = 18/56 (32%), Positives = 35/56 (62%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + ++ ++ L ++F+ R A++ D+ TGSSK FGFV +++ A++A Sbjct: 573 LFVKGLSEDTTEETLKESFEGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAA 625
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 36.2 bits (82), Expect = 0.089 Identities = 18/56 (32%), Positives = 35/56 (62%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + ++ ++ L ++F+ R A++ D+ TGSSK FGFV +++ A++A Sbjct: 570 LFVKGLSEDTTEETLKESFEGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAA 622
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 35.8 bits (81), Expect = 0.12 Identities = 22/98 (22%), Positives = 39/98 (39%) Frame = -3 Query: 631 PHNPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRFGR 452 PH+ +PG+ + +FI +P D ++ + FG+ Sbjct: 173 PHDYQPMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGK 232 Query: 451 VISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 + + + D ATG SK + F Y + +IA +NG Sbjct: 233 LRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNG 270
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI ++P+E +QE+ F+++G+V+ + K +GFV ++ +A+ AI + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 343 NGF 335 + + Sbjct: 56 HHY 58
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 35.8 bits (81), Expect = 0.12 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 LF+ IPQ+ D++L+D F F + A V V S+ FGFVS+ + A+A Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHA-VVVKDTNKRSRGFGFVSFAVEDDTKEALA 84 Score = 35.4 bits (80), Expect = 0.15 Identities = 16/58 (27%), Positives = 33/58 (56%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 ++F+ ++P + ++ L+ F +FG V A +DK+TG +K FV++ + + I Sbjct: 291 SVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECI 348
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI ++P+E +QE+ F+++G+V+ + K +GFV ++ +A+ AI + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 343 NGF 335 + + Sbjct: 56 HHY 58
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI ++P+E +QE+ F+++G+V+ + K +GFV ++ +A+ AI + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 343 NGF 335 + + Sbjct: 56 HHY 58
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 35.8 bits (81), Expect = 0.12 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = -3 Query: 484 ELSDAFQRFGRVI----SAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNGF 335 E SD F F + SAK+ VD TG S+ +GFV + + Q A+ M G+ Sbjct: 194 EDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGY 247
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI ++P+E +QE+ F+++G+V+ + K +GFV ++ +A+ AI + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 343 NGF 335 + + Sbjct: 56 HHY 58
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI ++P+E +QE+ F+++G+V+ + K +GFV ++ +A+ AI + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 343 NGF 335 + + Sbjct: 56 HHY 58
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI ++P+E +QE+ F+++G+V+ + K +GFV ++ +A+ AI + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 343 NGF 335 + + Sbjct: 56 HHY 58
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI ++P+E +QE+ F+++G+V+ + K +GFV ++ +A+ AI + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 343 NGF 335 + + Sbjct: 56 HHY 58
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 35.8 bits (81), Expect = 0.12 Identities = 15/62 (24%), Positives = 33/62 (53%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ + +L + F ++G+V+ AKV + + ++C+GFV+ A I+ Sbjct: 408 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISH 467 Query: 346 MN 341 ++ Sbjct: 468 LH 469
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 35.4 bits (80), Expect = 0.15 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ ++ + ++ L + F + G VI K+ DK G K F FV++ + VS A+ ++ Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 343 NG 338 NG Sbjct: 71 NG 72
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 35.4 bits (80), Expect = 0.15 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ ++ + ++ L + F + G VI K+ DK G K F FV++ + VS A+ ++ Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 343 NG 338 NG Sbjct: 71 NG 72
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 35.4 bits (80), Expect = 0.15 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +FI + + L D F +FG + V D T S+ FGFV++ +P S + Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 34.7 bits (78), Expect = 0.26 Identities = 22/87 (25%), Positives = 40/87 (45%) Frame = -3 Query: 637 GNPHNPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRF 458 G PH+ L ++ VAF R+ +F+ + +++ F++F Sbjct: 80 GQPHHELDSKTIDPK-VAFPRRAQPKMVTRTK-----KIFVGGLSANTVVEDVKQYFEQF 133 Query: 457 GRVISAKVFVDKATGSSKCFGFVSYDN 377 G+V A + DK T + FGFV+++N Sbjct: 134 GKVEDAMLMFDKTTNRHRGFGFVTFEN 160
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 35.4 bits (80), Expect = 0.15 Identities = 18/56 (32%), Positives = 34/56 (60%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + ++ ++ L ++F R A++ D+ TGSSK FGFV +++ A++A Sbjct: 575 LFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAA 627
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 35.4 bits (80), Expect = 0.15 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +FI + + ++L D F +FG V+ + +D TG S+ FGFV + S + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 35.4 bits (80), Expect = 0.15 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +FI + + ++L D F +FG V+ + +D TG S+ FGFV + S + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 35.4 bits (80), Expect = 0.15 Identities = 18/56 (32%), Positives = 34/56 (60%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + ++ ++ L ++F R A++ D+ TGSSK FGFV +++ A++A Sbjct: 574 LFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 35.4 bits (80), Expect = 0.15 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +FI + + L D F +FG + V D T S+ FGFV++ +P S + Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 34.7 bits (78), Expect = 0.26 Identities = 22/87 (25%), Positives = 40/87 (45%) Frame = -3 Query: 637 GNPHNPLKVPGVNVNSVAFSPRSNXXXXXXXXXXXGANLFIYHIPQEFGDQELSDAFQRF 458 G PH+ L ++ VAF R+ +F+ + +++ F++F Sbjct: 80 GQPHHELDSKTIDPK-VAFPRRAQPKMVTRTK-----KIFVGGLSANTVVEDVKQYFEQF 133 Query: 457 GRVISAKVFVDKATGSSKCFGFVSYDN 377 G+V A + DK T + FGFV+++N Sbjct: 134 GKVEDAMLMFDKTTNRHRGFGFVTFEN 160
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 35.4 bits (80), Expect = 0.15 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = -3 Query: 484 ELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +L + F R+G+V+ AKV + + ++C+GFV+ A I Sbjct: 443 DLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 35.4 bits (80), Expect = 0.15 Identities = 18/56 (32%), Positives = 34/56 (60%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + ++ ++ L ++F R A++ D+ TGSSK FGFV +++ A++A Sbjct: 573 LFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAA 625
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 35.0 bits (79), Expect = 0.20 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ ++ + ++ L + F + G VI K+ DK G K F FV++ + VS A+ ++ Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKLKQFAFVNFKHEVSVPYAMNLL 70 Query: 343 NG 338 NG Sbjct: 71 NG 72
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 35.0 bits (79), Expect = 0.20 Identities = 17/56 (30%), Positives = 33/56 (58%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ + ++ ++ L +AF ++A++ D+ TG+SK FGFV + A++A Sbjct: 504 LFVRGLSEDTTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAA 556
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 34.7 bits (78), Expect = 0.26 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = -3 Query: 592 SVAFSPRSNXXXXXXXXXXXGAN--LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKA 419 S + SP SN N L ++ + +++L + F R+G + V D+ Sbjct: 94 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 153 Query: 418 TGSSKCFGFVSYDNPVSAQSAIAMMNG 338 TG S+ F FV ++ ++ A+ NG Sbjct: 154 TGRSRGFAFVYFERIDDSKEAMERANG 180
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 34.7 bits (78), Expect = 0.26 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NL++ + +L F + G+VI AKV + + ++C+GFV+ A I+ Sbjct: 452 NLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISH 511 Query: 346 MN 341 ++ Sbjct: 512 LH 513
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 34.7 bits (78), Expect = 0.26 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +FI + + ++L D F +FG V+ + +D TG S+ FGFV + S + Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 153
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 34.7 bits (78), Expect = 0.26 Identities = 18/63 (28%), Positives = 36/63 (57%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 + +FI +PQ+ + +L FQR GR+ ++ + +G ++ F + Y + AQ+AIA Sbjct: 58 SEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIA 116 Query: 349 MMN 341 ++ Sbjct: 117 TLH 119
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 34.7 bits (78), Expect = 0.26 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = -3 Query: 592 SVAFSPRSNXXXXXXXXXXXGAN--LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKA 419 S + SP SN N L ++ + +++L + F R+G + V D+ Sbjct: 96 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 155 Query: 418 TGSSKCFGFVSYDNPVSAQSAIAMMNG 338 TG S+ F FV ++ ++ A+ NG Sbjct: 156 TGRSRGFAFVYFERIDDSKEAMERANG 182
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 34.3 bits (77), Expect = 0.34 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = -3 Query: 484 ELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 +L + F ++G+V+ AKV + + ++C+GFV+ A I Sbjct: 421 DLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 34.3 bits (77), Expect = 0.34 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+ ++ QEL F+R GRVI V D + FV + A++AIA + Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQL 132 Query: 343 NG 338 NG Sbjct: 133 NG 134
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 34.3 bits (77), Expect = 0.34 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+ ++ QEL F+R GRVI V D + FV + A++AIA + Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQL 132 Query: 343 NG 338 NG Sbjct: 133 NG 134
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 34.3 bits (77), Expect = 0.34 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+ ++ QEL F+R GRVI V D + FV + A++AIA + Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQL 132 Query: 343 NG 338 NG Sbjct: 133 NG 134
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 34.3 bits (77), Expect = 0.34 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+ ++ QEL F+R GRVI V D + FV + A++AIA + Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQL 132 Query: 343 NG 338 NG Sbjct: 133 NG 134
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 34.3 bits (77), Expect = 0.34 Identities = 16/61 (26%), Positives = 34/61 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI + + ++ L F+++ +SAKV +D T S G++++++ A+ A+ + Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 343 N 341 N Sbjct: 153 N 153 Score = 30.4 bits (67), Expect = 4.9 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = -3 Query: 475 DAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMN 341 D F R+G+++S K+ S K GFV +++ +A++ I M N Sbjct: 200 DTFSRYGKILSCKL------DSRKDIGFVYFEDEKTARNVIKMYN 238
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 34.3 bits (77), Expect = 0.34 Identities = 16/63 (25%), Positives = 35/63 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ ++P + +++L D F ++GR+ ++ K F FV +++P A+ AI Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIYGR 73 Query: 343 NGF 335 NG+ Sbjct: 74 NGY 76
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 34.3 bits (77), Expect = 0.34 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +F+ ++ ++ L + F + G + + D+ G K FGFV + +P S AIA++ Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70 Query: 343 NG 338 NG Sbjct: 71 NG 72
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 33.9 bits (76), Expect = 0.44 Identities = 16/63 (25%), Positives = 35/63 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ ++P + +++L D F ++GR+ ++ K F FV +++P A+ AI Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIYGR 72 Query: 343 NGF 335 NG+ Sbjct: 73 NGY 75
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 33.9 bits (76), Expect = 0.44 Identities = 16/63 (25%), Positives = 35/63 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ ++P + +++L D F ++GR+ ++ K F FV +++P A+ AI Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIYGR 72 Query: 343 NGF 335 NG+ Sbjct: 73 NGY 75
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 33.9 bits (76), Expect = 0.44 Identities = 13/49 (26%), Positives = 27/49 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDN 377 +F+ + E D+E+ F +FG ++ ++ DK K F F+++D+ Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS 186
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 33.9 bits (76), Expect = 0.44 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LF+ + ++ ++E+ + F +FG V + D+ S C GFV Y + +A +AI + Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGC-GFVKYSSKETAMAAIDGL 271 Query: 343 NG 338 NG Sbjct: 272 NG 273
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 33.5 bits (75), Expect = 0.58 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 + ++I +PQ+ + +L FQR GR+ ++ + +G ++ F + Y + AQ+AIA Sbjct: 58 SEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIA 116 Query: 349 MMN 341 ++ Sbjct: 117 TLH 119
>DND1_XENLA (Q6DCB7) Dead end protein homolog 1| Length = 371 Score = 33.1 bits (74), Expect = 0.76 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIA 350 + +FI IPQ+ + +L FQ G++ ++ + +G ++ F + Y + A SAI Sbjct: 77 SEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMT-FSGLNRGFAYARYISRRQAISAIM 135 Query: 349 MMNGF 335 +NGF Sbjct: 136 SLNGF 140
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 32.7 bits (73), Expect = 0.99 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D L + F+++G++ V D T S+ FGFV+Y Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 32.7 bits (73), Expect = 0.99 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI +P +EL D + G V ++ ++A G K +V Y+N A A+ M Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRA-GKPKGLAYVEYENESQASQAVMKM 861 Query: 343 NG 338 +G Sbjct: 862 DG 863
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 32.7 bits (73), Expect = 0.99 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D L + F+++G++ V D T S+ FGFV+Y Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NLFI ++ + EL AF+++G +I V A G + F+ + N A A Sbjct: 11 NLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVA 69 Query: 346 MNG 338 M+G Sbjct: 70 MSG 72
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 32.3 bits (72), Expect = 1.3 Identities = 20/83 (24%), Positives = 36/83 (43%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +FI +P + ++ + FG + + + VD + G+SK + F Y +P AIA + Sbjct: 284 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGL 342 Query: 343 NGFXXXXXXXXXXXKRDNNNKHS 275 NG N +H+ Sbjct: 343 NGMQLGDKQLVVQLACANQTRHN 365
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 NLFI ++ + EL AF+++G +I V A G + F+ + N A A Sbjct: 11 NLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVA 69 Query: 346 MNG 338 M+G Sbjct: 70 MSG 72
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 32.3 bits (72), Expect = 1.3 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = -3 Query: 487 QELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDN 377 +++ F++FG+V A + DK T + FGFV++++ Sbjct: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 32.3 bits (72), Expect = 1.3 Identities = 20/83 (24%), Positives = 36/83 (43%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +FI +P + ++ + FG + + + VD + G+SK + F Y +P AIA + Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGL 351 Query: 343 NGFXXXXXXXXXXXKRDNNNKHS 275 NG N +H+ Sbjct: 352 NGMQLGDKQLVVQLACANQQRHN 374
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D L + F+++G + V D T S+ FGFV+Y Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 32.0 bits (71), Expect = 1.7 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = -3 Query: 487 QELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDN 377 +++ F++FG+V A + DK T + FGFV++++ Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 32.0 bits (71), Expect = 1.7 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = -3 Query: 487 QELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDN 377 +++ F++FG+V A + DK T + FGFV++++ Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D L + F+++G + V D T S+ FGFV+Y Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D L + F+++G + V D T S+ FGFV+Y Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSA 356 LF+ +I + + F +G + V VD TG+SK F +V + P A A Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQA 382
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 31.6 bits (70), Expect = 2.2 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%) Frame = -3 Query: 484 ELSDAFQRFGRVISAK--------VFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 +L+D F++ G V K +++DK TG K VSY++P +A++A+ +G Sbjct: 375 DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 431
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 31.6 bits (70), Expect = 2.2 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDN 377 N+FI ++P + ++E+ +AF +FG++ K+ S K FV + N Sbjct: 300 NVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL------SKKNIAFVHFLN 343
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 31.6 bits (70), Expect = 2.2 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVD---KATGS--SKCFGFVSYDNPVSA 365 ++LF+ ++ Q L+DAF+ + AKV K G S FGFV++ A Sbjct: 599 SSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQA 658 Query: 364 QSAIAMMNG 338 Q+A+ +M+G Sbjct: 659 QAALKVMDG 667
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 31.6 bits (70), Expect = 2.2 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%) Frame = -3 Query: 484 ELSDAFQRFGRVISAK--------VFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 +L+D F++ G V K +++DK TG K VSY++P +A++A+ +G Sbjct: 376 DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 432
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 +++L + F ++G + + D+ + S+ F FV ++N A+ A NG Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 +++L + F ++G + + D+ + S+ F FV ++N A+ A NG Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 +++L + F ++G + + D+ + S+ F FV ++N A+ A NG Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 31.2 bits (69), Expect = 2.9 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI +P +EL + + G V ++ ++A G K +V Y+N A A+ M Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAYVEYENESQASQAVMKM 879 Query: 343 NG 338 +G Sbjct: 880 DG 881
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -3 Query: 463 RFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 R+ SAK+ D T S+ +GFV + + +SA+A M G Sbjct: 209 RYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 31.2 bits (69), Expect = 2.9 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D+ L F+++G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 31.2 bits (69), Expect = 2.9 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D+ L F+++G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 31.2 bits (69), Expect = 2.9 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D+ L F+++G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 31.2 bits (69), Expect = 2.9 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D+ L F+++G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>NELFE_DROVI (Q95ZE9) Negative elongation factor E| Length = 281 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -3 Query: 490 DQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 ++ L F +G +++ + ++K+ G FVS+ P SA AIA M+G Sbjct: 178 EEFLKKTFNDYGTIVNVSMEIEKSRG------FVSFAKPESADRAIAEMHG 222
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 31.2 bits (69), Expect = 2.9 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 LFI +P +EL + + G V ++ ++A G K +V Y+N A A+ M Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAYVEYENESQASQAVMKM 861 Query: 343 NG 338 +G Sbjct: 862 DG 863
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 31.2 bits (69), Expect = 2.9 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSY 383 LFI + E D+ L F+++G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/62 (27%), Positives = 35/62 (56%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 +L++ ++P+ ++++ + F+R+GRV S K+ + K FV + + SAQ A Sbjct: 7 HLWVGNLPENVREEKIIEHFKRYGRVESVKI-LPKRGSEGGVAAFVDFVDIKSAQKAHNS 65 Query: 346 MN 341 +N Sbjct: 66 VN 67
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/59 (32%), Positives = 31/59 (52%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 A+L + ++PQ ++ L +AF FG+V A V VD G G V + +A+ A+ Sbjct: 153 ASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDD-RGRPSGKGIVEFSGKPAARKAL 210
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/59 (32%), Positives = 31/59 (52%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 A+L + ++PQ ++ L +AF FG+V A V VD G G V + +A+ A+ Sbjct: 150 ASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDD-RGRPSGKGIVEFSGKPAARKAL 207
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/62 (27%), Positives = 35/62 (56%) Frame = -3 Query: 526 NLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAM 347 +L++ ++P+ ++++ + F+R+GRV S K+ + K FV + + SAQ A Sbjct: 7 HLWVGNLPENVREEKIIEHFKRYGRVESVKI-LPKRGSEGGVAAFVDFVDIKSAQKAHNS 65 Query: 346 MN 341 +N Sbjct: 66 VN 67
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/59 (32%), Positives = 31/59 (52%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 A+L + ++PQ ++ L +AF FG+V A V VD G G V + +A+ A+ Sbjct: 148 ASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDD-RGRPSGKGIVEFSGKPAARKAL 205
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/59 (32%), Positives = 31/59 (52%) Frame = -3 Query: 529 ANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAI 353 A+L + ++PQ ++ L +AF FG+V A V VD G G V + +A+ A+ Sbjct: 148 ASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDD-RGRPSGKGIVEFSGKPAARKAL 205
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = -3 Query: 484 ELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 +L D F FG ++S+ + +G SK +GFV++ +A A +NG Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNG 447
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 30.8 bits (68), Expect = 3.7 Identities = 13/63 (20%), Positives = 32/63 (50%) Frame = -3 Query: 523 LFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMM 344 +++ H+P + + + +FG + ++ K TG+SK + FV +++ A+ M Sbjct: 49 VYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 108 Query: 343 NGF 335 + + Sbjct: 109 DNY 111
>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit| (eIF3 p90) (Cell cycle regulation and translation initiation protein) Length = 763 Score = 30.4 bits (67), Expect = 4.9 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = -3 Query: 481 LSDAFQRFGRVISAKVFVDKATGSSKCFGFVSYDNPVSAQSAIAMMNG 338 L+ F + G+V++ + +D+ATG +K F FV + A+ I +G Sbjct: 99 LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,542,582 Number of Sequences: 219361 Number of extensions: 1944970 Number of successful extensions: 5226 Number of sequences better than 10.0: 262 Number of HSP's better than 10.0 without gapping: 4890 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5180 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
