ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdh23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479721.1| Oryza sativa (japonica cultivar-group), mRNA 400 e-108
2ref|XM_507090.1| PREDICTED Oryza sativa (japonica cultivar-group... 400 e-108
3dbj|AK066688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
4dbj|AK061825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
5gb|BT017256.1| Zea mays clone EL01N0308C10.c mRNA sequence 274 3e-70
6gb|AY105946.1| Zea mays PCO088037 mRNA sequence 274 3e-70
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 208 2e-50
8dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic D... 208 2e-50
9gb|BT014355.1| Lycopersicon esculentum clone 133632F, mRNA sequence 70 9e-09
10gb|AF355462.1|AF355462 Micrococcus lylae MlyIM (mlyIM) and MlyIR... 42 2.1
11gb|AC025815.10|AC025815 Arabidopsis thaliana chromosome 1 BAC T8... 42 2.1
12gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, co... 42 2.1
13gb|AC006808.1| Caenorhabditis elegans cosmid Y58G8A, complete se... 40 8.3
14gb|AY742315.1| Coracopsis vasa chromosome W spindlin gene, intro... 40 8.3
15gb|AY742314.1| Pyrrhura rhodogaster chromosome W spindlin gene, ... 40 8.3
16gb|AC155721.7| Mus musculus 6 BAC RP24-186O21 (Roswell Park Canc... 40 8.3
17emb|CR391926.10| Zebrafish DNA sequence from clone CH211-275N22 ... 40 8.3
18emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on ch... 40 8.3
19gb|AE014174.1| Mus musculus piebald deletion region section 2 of... 40 8.3
20gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete se... 40 8.3
21gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, comp... 40 8.3
22gb|AY095504.1| Psittacus erithacus chromosome W spindlin gene, p... 40 8.3
23gb|AC020900.5| Homo sapiens chromosome 5 clone CTC-506B8, comple... 40 8.3
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
25emb|AJ489288.1|PPO489288 Pemphigus populi partial lw-Rh gene for... 40 8.3
26emb|AJ489287.1|TSU489287 Thelaxes suberi partial lw-Rh gene for ... 40 8.3
27emb|AJ539463.1|ASP539463 Anoecia sp. L5 partial lw-Rh gene for l... 40 8.3
28emb|AJ539465.1|CSP539465 Cerataphis sp. D15 partial lw-Rh gene f... 40 8.3
29dbj|AB127994.1| Amur virus gene for glycoprotein precursor, part... 40 8.3
30gb|DQ056293.1| Soochong virus-2 isolate SC-2 glycoprotein precus... 40 8.3
31gb|AY675353.1| Soochong virus-1 isolate SC-1 glycoprotein precus... 40 8.3
32dbj|AB030232.1| Hantaan virus M segment gene for envelope polypr... 40 8.3
33gb|AC153565.5| Mus musculus 10 BAC RP23-228H2 (Roswell Park Canc... 40 8.3
34gb|AC102815.31| Mus musculus chromosome 14, clone RP23-55A5, com... 40 8.3
35emb|CR407598.24| Zebrafish DNA sequence from clone CH211-141I4 i... 40 8.3
36gb|AC153908.2| Mus musculus 6 BAC RP23-190K19 (Roswell Park Canc... 40 8.3
37gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3 
>ref|XM_479721.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1217

 Score =  400 bits (202), Expect = e-108
 Identities = 343/390 (87%)
 Strand = Plus / Minus

                                                                       
Query: 217 gctagccaccatttctgttttcttatcaaggctggacgtgagcagcttgtcgatctcacc 276
           ||||||||||||||||||||||||||||||||| || || ||| |||||||||||||| |
Sbjct: 930 gctagccaccatttctgttttcttatcaaggctagaagtcagctgcttgtcgatctcagc 871

                                                                       
Query: 277 gaacacatcttccaccgtggtatctccttttaccttgactataacatcttcatatattga 336
            |||||||| ||||||   | ||| ||||||||||  ||||| |||||||| || |||||
Sbjct: 870 aaacacatcatccaccaaagcatccccttttacctcaactatcacatcttcgtaaattga 811

                                                                       
Query: 337 aaccaaggactcgatattttgataatgtgtctgcaacctcagcttaaccttttcttctgt 396
            | |||||| || | |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 810 tagcaaggattctacattttgataatgagtctgtaacctcagcttaaccttttcttctgt 751

                                                                       
Query: 397 atcatcaaatctttgtgtcagcctggatgcaatttcttcattctcaggtggagaatactt 456
           |||||||||||| ||||| ||||| || || |||||||||||||| ||||| ||||||||
Sbjct: 750 atcatcaaatctctgtgtaagccttgaagcgatttcttcattctccggtggggaatactt 691

                                                                       
Query: 457 tagatggtatattttcccagtttcaggatccagccgtctgccaactaccctttcaacaag 516
           |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 690 tagatggtatattttcccagttacaggatcaagccgtctcccaactaccctttcaacaag 631

                                                                       
Query: 517 aagttcatccggaacatctaatagaatgaaaatgtcaggccggattccaagagtttccag 576
           ||||||||| |||||||| || ||||||||||||||||| |||||   ||||||||||||
Sbjct: 630 aagttcatctggaacatccaaaagaatgaaaatgtcaggtcggatattaagagtttccag 571

                                         
Query: 577 tgccattgcctgtgaataacttctcgggta 606
            ||||| || || ||||| ||||| |||||
Sbjct: 570 cgccatcgcttgcgaatagcttcttgggta 541
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>ref|XM_507090.1| PREDICTED Oryza sativa (japonica cultivar-group), P0007D08.12 mRNA
          Length = 1434

 Score =  400 bits (202), Expect = e-108
 Identities = 343/390 (87%)
 Strand = Plus / Minus

                                                                       
Query: 217 gctagccaccatttctgttttcttatcaaggctggacgtgagcagcttgtcgatctcacc 276
           ||||||||||||||||||||||||||||||||| || || ||| |||||||||||||| |
Sbjct: 929 gctagccaccatttctgttttcttatcaaggctagaagtcagctgcttgtcgatctcagc 870

                                                                       
Query: 277 gaacacatcttccaccgtggtatctccttttaccttgactataacatcttcatatattga 336
            |||||||| ||||||   | ||| ||||||||||  ||||| |||||||| || |||||
Sbjct: 869 aaacacatcatccaccaaagcatccccttttacctcaactatcacatcttcgtaaattga 810

                                                                       
Query: 337 aaccaaggactcgatattttgataatgtgtctgcaacctcagcttaaccttttcttctgt 396
            | |||||| || | |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 809 tagcaaggattctacattttgataatgagtctgtaacctcagcttaaccttttcttctgt 750

                                                                       
Query: 397 atcatcaaatctttgtgtcagcctggatgcaatttcttcattctcaggtggagaatactt 456
           |||||||||||| ||||| ||||| || || |||||||||||||| ||||| ||||||||
Sbjct: 749 atcatcaaatctctgtgtaagccttgaagcgatttcttcattctccggtggggaatactt 690

                                                                       
Query: 457 tagatggtatattttcccagtttcaggatccagccgtctgccaactaccctttcaacaag 516
           |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 689 tagatggtatattttcccagttacaggatcaagccgtctcccaactaccctttcaacaag 630

                                                                       
Query: 517 aagttcatccggaacatctaatagaatgaaaatgtcaggccggattccaagagtttccag 576
           ||||||||| |||||||| || ||||||||||||||||| |||||   ||||||||||||
Sbjct: 629 aagttcatctggaacatccaaaagaatgaaaatgtcaggtcggatattaagagtttccag 570

                                         
Query: 577 tgccattgcctgtgaataacttctcgggta 606
            ||||| || || ||||| ||||| |||||
Sbjct: 569 cgccatcgcttgcgaatagcttcttgggta 540
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>dbj|AK066688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073K09, full
           insert sequence
          Length = 1433

 Score =  400 bits (202), Expect = e-108
 Identities = 343/390 (87%)
 Strand = Plus / Minus

                                                                       
Query: 217 gctagccaccatttctgttttcttatcaaggctggacgtgagcagcttgtcgatctcacc 276
           ||||||||||||||||||||||||||||||||| || || ||| |||||||||||||| |
Sbjct: 928 gctagccaccatttctgttttcttatcaaggctagaagtcagctgcttgtcgatctcagc 869

                                                                       
Query: 277 gaacacatcttccaccgtggtatctccttttaccttgactataacatcttcatatattga 336
            |||||||| ||||||   | ||| ||||||||||  ||||| |||||||| || |||||
Sbjct: 868 aaacacatcatccaccaaagcatccccttttacctcaactatcacatcttcgtaaattga 809

                                                                       
Query: 337 aaccaaggactcgatattttgataatgtgtctgcaacctcagcttaaccttttcttctgt 396
            | |||||| || | |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 808 tagcaaggattctacattttgataatgagtctgtaacctcagcttaaccttttcttctgt 749

                                                                       
Query: 397 atcatcaaatctttgtgtcagcctggatgcaatttcttcattctcaggtggagaatactt 456
           |||||||||||| ||||| ||||| || || |||||||||||||| ||||| ||||||||
Sbjct: 748 atcatcaaatctctgtgtaagccttgaagcgatttcttcattctccggtggggaatactt 689

                                                                       
Query: 457 tagatggtatattttcccagtttcaggatccagccgtctgccaactaccctttcaacaag 516
           |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 688 tagatggtatattttcccagttacaggatcaagccgtctcccaactaccctttcaacaag 629

                                                                       
Query: 517 aagttcatccggaacatctaatagaatgaaaatgtcaggccggattccaagagtttccag 576
           ||||||||| |||||||| || ||||||||||||||||| |||||   ||||||||||||
Sbjct: 628 aagttcatctggaacatccaaaagaatgaaaatgtcaggtcggatattaagagtttccag 569

                                         
Query: 577 tgccattgcctgtgaataacttctcgggta 606
            ||||| || || ||||| ||||| |||||
Sbjct: 568 cgccatcgcttgcgaatagcttcttgggta 539
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>dbj|AK061825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C04, full
           insert sequence
          Length = 1217

 Score =  400 bits (202), Expect = e-108
 Identities = 343/390 (87%)
 Strand = Plus / Minus

                                                                       
Query: 217 gctagccaccatttctgttttcttatcaaggctggacgtgagcagcttgtcgatctcacc 276
           ||||||||||||||||||||||||||||||||| || || ||| |||||||||||||| |
Sbjct: 930 gctagccaccatttctgttttcttatcaaggctagaagtcagctgcttgtcgatctcagc 871

                                                                       
Query: 277 gaacacatcttccaccgtggtatctccttttaccttgactataacatcttcatatattga 336
            |||||||| ||||||   | ||| ||||||||||  ||||| |||||||| || |||||
Sbjct: 870 aaacacatcatccaccaaagcatccccttttacctcaactatcacatcttcgtaaattga 811

                                                                       
Query: 337 aaccaaggactcgatattttgataatgtgtctgcaacctcagcttaaccttttcttctgt 396
            | |||||| || | |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 810 tagcaaggattctacattttgataatgagtctgtaacctcagcttaaccttttcttctgt 751

                                                                       
Query: 397 atcatcaaatctttgtgtcagcctggatgcaatttcttcattctcaggtggagaatactt 456
           |||||||||||| ||||| ||||| || || |||||||||||||| ||||| ||||||||
Sbjct: 750 atcatcaaatctctgtgtaagccttgaagcgatttcttcattctccggtggggaatactt 691

                                                                       
Query: 457 tagatggtatattttcccagtttcaggatccagccgtctgccaactaccctttcaacaag 516
           |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 690 tagatggtatattttcccagttacaggatcaagccgtctcccaactaccctttcaacaag 631

                                                                       
Query: 517 aagttcatccggaacatctaatagaatgaaaatgtcaggccggattccaagagtttccag 576
           ||||||||| |||||||| || ||||||||||||||||| |||||   ||||||||||||
Sbjct: 630 aagttcatctggaacatccaaaagaatgaaaatgtcaggtcggatattaagagtttccag 571

                                         
Query: 577 tgccattgcctgtgaataacttctcgggta 606
            ||||| || || ||||| ||||| |||||
Sbjct: 570 cgccatcgcttgcgaatagcttcttgggta 541
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>gb|BT017256.1| Zea mays clone EL01N0308C10.c mRNA sequence
          Length = 1406

 Score =  274 bits (138), Expect = 3e-70
 Identities = 297/350 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 agcagcttgtcgatctcaccgaacacatcttccaccgtggtatctccttttaccttgact 316
           ||||||| |||||||| | | || ||| | ||||| |||| ||||||||  || ||||| 
Sbjct: 846 agcagctcgtcgatcttagcaaagacagcatccactgtggcatctccttgcactttgaca 787

                                                                       
Query: 317 ataacatcttcatatattgaaaccaaggactcgatattttgataatgtgtctgcaacctc 376
           ||||  |  |||||| |||| | |||||||||||||||||| ||||  |||| || ||||
Sbjct: 786 ataatgttctcatatgttgatagcaaggactcgatattttggtaataagtctccagcctc 727

                                                                       
Query: 377 agcttaaccttttcttctgtatcatcaaatctttgtgtcagcctggatgcaatttcttca 436
           | ||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||
Sbjct: 726 aacttaaccttttcttctgtatcgtcaaatctttgtgtaagccttgaagcgatttcttca 667

                                                                       
Query: 437 ttctcaggtggagaatactttagatggtatattttcccagtttcaggatccagccgtctg 496
           ||||| || ||||||||||| | ||| ||||||||||| ||| ||||||| ||||| || 
Sbjct: 666 ttctctggcggagaatacttcaaatgatatattttccctgttacaggatcaagccgcctt 607

                                                                       
Query: 497 ccaactaccctttcaacaagaagttcatccggaacatctaatagaatgaaaatgtcaggc 556
           ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| | ||||||
Sbjct: 606 ccaaccaccctttcaacaaggagttcatctggaacatctaacagaatgaaagtatcaggc 547

                                                             
Query: 557 cggattccaagagtttccagtgccattgcctgtgaataacttctcgggta 606
           |||||| ||||||||||||  ||||| ||||||||||| ||||| |||||
Sbjct: 546 cggatttcaagagtttccaaggccatggcctgtgaatagcttcttgggta 497
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>gb|AY105946.1| Zea mays PCO088037 mRNA sequence
          Length = 1275

 Score =  274 bits (138), Expect = 3e-70
 Identities = 297/350 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 agcagcttgtcgatctcaccgaacacatcttccaccgtggtatctccttttaccttgact 316
           ||||||| |||||||| | | || ||| | ||||| |||| ||||||||  || ||||| 
Sbjct: 866 agcagctcgtcgatcttagcaaagacagcatccactgtggcatctccttgcactttgaca 807

                                                                       
Query: 317 ataacatcttcatatattgaaaccaaggactcgatattttgataatgtgtctgcaacctc 376
           ||||  |  |||||| |||| | |||||||||||||||||| ||||  |||| || ||||
Sbjct: 806 ataatgttctcatatgttgatagcaaggactcgatattttggtaataagtctccagcctc 747

                                                                       
Query: 377 agcttaaccttttcttctgtatcatcaaatctttgtgtcagcctggatgcaatttcttca 436
           | ||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||
Sbjct: 746 aacttaaccttttcttctgtatcgtcaaatctttgtgtaagccttgaagcgatttcttca 687

                                                                       
Query: 437 ttctcaggtggagaatactttagatggtatattttcccagtttcaggatccagccgtctg 496
           ||||| || ||||||||||| | ||| ||||||||||| ||| ||||||| ||||| || 
Sbjct: 686 ttctctggcggagaatacttcaaatgatatattttccctgttacaggatcaagccgcctt 627

                                                                       
Query: 497 ccaactaccctttcaacaagaagttcatccggaacatctaatagaatgaaaatgtcaggc 556
           ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| | ||||||
Sbjct: 626 ccaaccaccctttcaacaaggagttcatctggaacatctaacagaatgaaagtatcaggc 567

                                                             
Query: 557 cggattccaagagtttccagtgccattgcctgtgaataacttctcgggta 606
           |||||| ||||||||||||  ||||| ||||||||||| ||||| |||||
Sbjct: 566 cggatttcaagagtttccaaggccatggcctgtgaatagcttcttgggta 517
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score =  208 bits (105), Expect = 2e-50
 Identities = 138/149 (92%)
 Strand = Plus / Plus

                                                                          
Query: 383    accttttcttctgtatcatcaaatctttgtgtcagcctggatgcaatttcttcattctca 442
              |||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| 
Sbjct: 456529 accttttcttctgtatcatcaaatctctgtgtaagccttgaagcgatttcttcattctcc 456588

                                                                          
Query: 443    ggtggagaatactttagatggtatattttcccagtttcaggatccagccgtctgccaact 502
              ||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 456589 ggtggggaatactttagatggtatattttcccagttacaggatcaagccgtctcccaact 456648

                                           
Query: 503    accctttcaacaagaagttcatccggaac 531
              ||||||||||||||||||||||| |||||
Sbjct: 456649 accctttcaacaagaagttcatctggaac 456677



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                          
Query: 217    gctagccaccatttctgttttcttatcaaggctggacgtgagcagcttgtcgatctcacc 276
              ||||||||||||||||||||||||||||||||| || || ||| |||||||||||||| |
Sbjct: 455595 gctagccaccatttctgttttcttatcaaggctagaagtcagctgcttgtcgatctcagc 455654

                              
Query: 277    gaacacatcttccacc 292
               |||||||| ||||||
Sbjct: 455655 aaacacatcatccacc 455670



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                          
Query: 314    actataacatcttcatatattgaaaccaaggactcgatattttgataatgtgtctgcaac 373
              ||||| |||||||| || ||||| | |||||| || | |||||||||||| ||||| |||
Sbjct: 455906 actatcacatcttcgtaaattgatagcaaggattctacattttgataatgagtctgtaac 455965

                           
Query: 374    ctcagcttaacct 386
              |||||||||||||
Sbjct: 455966 ctcagcttaacct 455978



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                          
Query: 530    acatctaatagaatgaaaatgtcaggccggattccaagagtttccagtgccattgcctgt 589
              ||||| || ||||||||||||||||| |||||   |||||||||||| ||||| || || 
Sbjct: 457156 acatccaaaagaatgaaaatgtcaggtcggatattaagagtttccagcgccatcgcttgc 457215

                               
Query: 590    gaataacttctcgggta 606
              ||||| ||||| |||||
Sbjct: 457216 gaatagcttcttgggta 457232
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>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0007D08
          Length = 183142

 Score =  208 bits (105), Expect = 2e-50
 Identities = 138/149 (92%)
 Strand = Plus / Plus

                                                                         
Query: 383   accttttcttctgtatcatcaaatctttgtgtcagcctggatgcaatttcttcattctca 442
             |||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| 
Sbjct: 46489 accttttcttctgtatcatcaaatctctgtgtaagccttgaagcgatttcttcattctcc 46548

                                                                         
Query: 443   ggtggagaatactttagatggtatattttcccagtttcaggatccagccgtctgccaact 502
             ||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 46549 ggtggggaatactttagatggtatattttcccagttacaggatcaagccgtctcccaact 46608

                                          
Query: 503   accctttcaacaagaagttcatccggaac 531
             ||||||||||||||||||||||| |||||
Sbjct: 46609 accctttcaacaagaagttcatctggaac 46637



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                         
Query: 217   gctagccaccatttctgttttcttatcaaggctggacgtgagcagcttgtcgatctcacc 276
             ||||||||||||||||||||||||||||||||| || || ||| |||||||||||||| |
Sbjct: 45555 gctagccaccatttctgttttcttatcaaggctagaagtcagctgcttgtcgatctcagc 45614

                             
Query: 277   gaacacatcttccacc 292
              |||||||| ||||||
Sbjct: 45615 aaacacatcatccacc 45630



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                         
Query: 314   actataacatcttcatatattgaaaccaaggactcgatattttgataatgtgtctgcaac 373
             ||||| |||||||| || ||||| | |||||| || | |||||||||||| ||||| |||
Sbjct: 45866 actatcacatcttcgtaaattgatagcaaggattctacattttgataatgagtctgtaac 45925

                          
Query: 374   ctcagcttaacct 386
             |||||||||||||
Sbjct: 45926 ctcagcttaacct 45938



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                         
Query: 530   acatctaatagaatgaaaatgtcaggccggattccaagagtttccagtgccattgcctgt 589
             ||||| || ||||||||||||||||| |||||   |||||||||||| ||||| || || 
Sbjct: 47116 acatccaaaagaatgaaaatgtcaggtcggatattaagagtttccagcgccatcgcttgc 47175

                              
Query: 590   gaataacttctcgggta 606
             ||||| ||||| |||||
Sbjct: 47176 gaatagcttcttgggta 47192
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>gb|BT014355.1| Lycopersicon esculentum clone 133632F, mRNA sequence
          Length = 1139

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                       
Query: 376 cagcttaaccttttcttctgtatcatcaaatctttgtgtcagcctggatgcaatttcttc 435
           |||||| ||||||||||||||||||||||| |  || || ||||| |  || ||||| ||
Sbjct: 771 cagcttcaccttttcttctgtatcatcaaagcgctgggtaagccttgcagcgatttcatc 712

                                                              
Query: 436 attctcaggtggagaatactttagatggtatattttcccagtttcaggatc 486
             |||| || ||||||||||| | |||||||||| |||||||| |||||||
Sbjct: 711 ggtctctggcggagaatacttcaaatggtatattctcccagttacaggatc 661
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>gb|AF355462.1|AF355462 Micrococcus lylae MlyIM (mlyIM) and MlyIR (mlyIR) genes, complete
           cds
          Length = 2471

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 386 ttttcttctgtatcatcaaat 406
           |||||||||||||||||||||
Sbjct: 278 ttttcttctgtatcatcaaat 258
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>gb|AC025815.10|AC025815 Arabidopsis thaliana chromosome 1 BAC T8D8 genomic sequence, complete
            sequence
          Length = 55021

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 319  aacatcttcatatattgaaac 339
            |||||||||||||||||||||
Sbjct: 5765 aacatcttcatatattgaaac 5745
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>gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, complete sequence
          Length = 211732

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    gacaaagggctttctaaatat 114
             |||||||||||||||||||||
Sbjct: 68618 gacaaagggctttctaaatat 68598
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>gb|AC006808.1| Caenorhabditis elegans cosmid Y58G8A, complete sequence
          Length = 34544

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 316  tataacatcttcatatattgaaac 339
            |||||||||| |||||||||||||
Sbjct: 9182 tataacatctgcatatattgaaac 9205
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>gb|AY742315.1| Coracopsis vasa chromosome W spindlin gene, intron III
          Length = 511

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 gtatcatcaaatctttgtgt 414
           ||||||||||||||||||||
Sbjct: 136 gtatcatcaaatctttgtgt 117
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>gb|AY742314.1| Pyrrhura rhodogaster chromosome W spindlin gene, intron III
          Length = 979

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 gtatcatcaaatctttgtgt 414
           ||||||||||||||||||||
Sbjct: 135 gtatcatcaaatctttgtgt 116
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>gb|AC155721.7| Mus musculus 6 BAC RP24-186O21 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 180652

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   ttagatggtatattttccca 475
             ||||||||||||||||||||
Sbjct: 11750 ttagatggtatattttccca 11731
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>emb|CR391926.10| Zebrafish DNA sequence from clone CH211-275N22 in linkage group 1,
             complete sequence
          Length = 147649

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   acatcttcatatattgaaac 339
             ||||||||||||||||||||
Sbjct: 61205 acatcttcatatattgaaac 61186
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>emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on chromosome 11 Contains three
              novel genes, the 5' end of the Galnt9 gene for
              UDP-N-acetyl-alpha-D-galactosamine: polypeptide
              N-acetylgalactosaminyltransferase 9 and a CpG island,
              complete sequence
          Length = 198647

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    aatgtgtctgcaacctcagc 379
              ||||||||||||||||||||
Sbjct: 159194 aatgtgtctgcaacctcagc 159213
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>gb|AE014174.1| Mus musculus piebald deletion region section 2 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    ccatttctgttttcttatca 244
              ||||||||||||||||||||
Sbjct: 363821 ccatttctgttttcttatca 363840
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>gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete sequence
          Length = 115904

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   ttagatggtatattttccca 475
             ||||||||||||||||||||
Sbjct: 77131 ttagatggtatattttccca 77150
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>gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, complete sequence
          Length = 180225

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     aaagatcattacaaaacagtgacg 76
              ||||| ||||||||||||||||||
Sbjct: 128892 aaagagcattacaaaacagtgacg 128915
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>gb|AY095504.1| Psittacus erithacus chromosome W spindlin gene, partial cds
          Length = 1255

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 gtatcatcaaatctttgtgt 414
           ||||||||||||||||||||
Sbjct: 326 gtatcatcaaatctttgtgt 307
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>gb|AC020900.5| Homo sapiens chromosome 5 clone CTC-506B8, complete sequence
          Length = 183768

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     aaagatcattacaaaacagtgacg 76
              ||||| ||||||||||||||||||
Sbjct: 136052 aaagagcattacaaaacagtgacg 136029
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    cttaaccttttcttctgtat 398
              ||||||||||||||||||||
Sbjct: 189608 cttaaccttttcttctgtat 189627
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>emb|AJ489288.1|PPO489288 Pemphigus populi partial lw-Rh gene for long-wavelength opsin,
           exons 1-5
          Length = 1049

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 ttttaccttgactataacat 323
           ||||||||||||||||||||
Sbjct: 375 ttttaccttgactataacat 356
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>emb|AJ489287.1|TSU489287 Thelaxes suberi partial lw-Rh gene for long-wavelength opsin, exons
           1-5
          Length = 1026

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 ttttaccttgactataacat 323
           ||||||||||||||||||||
Sbjct: 363 ttttaccttgactataacat 344
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>emb|AJ539463.1|ASP539463 Anoecia sp. L5 partial lw-Rh gene for long-wavelength opsin, exons
           1-5
          Length = 1068

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 ttttaccttgactataacat 323
           ||||||||||||||||||||
Sbjct: 366 ttttaccttgactataacat 347
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>emb|AJ539465.1|CSP539465 Cerataphis sp. D15 partial lw-Rh gene for long-wavelength opsin,
           exons 1-5
          Length = 1039

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 ttttaccttgactataacat 323
           ||||||||||||||||||||
Sbjct: 369 ttttaccttgactataacat 350
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>dbj|AB127994.1| Amur virus gene for glycoprotein precursor, partial cds, strain:B78
          Length = 3579

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 379  cttaaccttttcttctgtat 398
            ||||||||||||||||||||
Sbjct: 3546 cttaaccttttcttctgtat 3565
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>gb|DQ056293.1| Soochong virus-2 isolate SC-2 glycoprotein precusor mRNA, complete
            cds
          Length = 3615

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 379  cttaaccttttcttctgtat 398
            ||||||||||||||||||||
Sbjct: 3564 cttaaccttttcttctgtat 3583
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>gb|AY675353.1| Soochong virus-1 isolate SC-1 glycoprotein precusor mRNA, complete
            cds
          Length = 3615

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 379  cttaaccttttcttctgtat 398
            ||||||||||||||||||||
Sbjct: 3564 cttaaccttttcttctgtat 3583
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>dbj|AB030232.1| Hantaan virus M segment gene for envelope polyprotein, complete cds
          Length = 3615

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 379  cttaaccttttcttctgtat 398
            ||||||||||||||||||||
Sbjct: 3564 cttaaccttttcttctgtat 3583
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>gb|AC153565.5| Mus musculus 10 BAC RP23-228H2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187589

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   tgcaatttcttcattctcag 443
             ||||||||||||||||||||
Sbjct: 62703 tgcaatttcttcattctcag 62684
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>gb|AC102815.31| Mus musculus chromosome 14, clone RP23-55A5, complete sequence
          Length = 151802

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   ccatttctgttttcttatca 244
             ||||||||||||||||||||
Sbjct: 17433 ccatttctgttttcttatca 17452
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>emb|CR407598.24| Zebrafish DNA sequence from clone CH211-141I4 in linkage group 1,
             complete sequence
          Length = 153682

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   acatcttcatatattgaaac 339
             ||||||||||||||||||||
Sbjct: 26741 acatcttcatatattgaaac 26722
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>gb|AC153908.2| Mus musculus 6 BAC RP23-190K19 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201588

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   ttagatggtatattttccca 475
             ||||||||||||||||||||
Sbjct: 67714 ttagatggtatattttccca 67695
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>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
             complete sequence
          Length = 160603

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   cttaaccttttcttctgtat 398
             ||||||||||||||||||||
Sbjct: 71792 cttaaccttttcttctgtat 71811


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,926,779
Number of Sequences: 3902068
Number of extensions: 5926779
Number of successful extensions: 112109
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111988
Number of HSP's gapped (non-prelim): 121
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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