Clone Name | rbasdh21 |
---|---|
Clone Library Name | barley_pub |
>emb|AM039895.1| Hordeum vulgare mRNA for putative AdoMet synthase 3 (sam3 gene) Length = 1447 Score = 351 bits (177), Expect = 9e-94 Identities = 202/211 (95%), Gaps = 1/211 (0%) Strand = Plus / Minus Query: 113 aaatatatcaaatgatacaccagtaagaaaacttagcactgatcaccagacggcangacc 172 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1447 aaatatatcaaatgatacaccagtaagaaaacttagcactgatcaccagacggcaagacc 1388 Query: 173 agtgtagcacgtcgcagcgatgtcgaatgctgttcttanttnntaggagcaaaagaaccc 232 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1387 agtgtagcacgtcgcagcgatgtcgaatgctgttcttacttcccaggagcaaaagaaccc 1328 Query: 233 cgccttgccgaacttgagaggcatttgaccaagaaaaccccgagtantgatgtcttgttc 292 |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 1327 cgccttgccgaacttgagaggcatctgaccaagaaaaccccgagt-gtgatgtcttgttc 1269 Query: 293 ttaggcngatgccttgtcgaacttgaggggc 323 |||||| |||||||||||||||||||||||| Sbjct: 1268 ttaggcagatgccttgtcgaacttgaggggc 1238
>emb|AM039893.1| Hordeum vulgare sam1 gene for putative AdoMet synthase 1 Length = 1515 Score = 327 bits (165), Expect = 1e-86 Identities = 249/274 (90%), Gaps = 4/274 (1%) Strand = Plus / Minus Query: 53 gactaacagagcaaact-gcacatcactcagcagttncagagacacaaaaagaaaaaggg 111 ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 1508 gactaacagagcaaacttgcacatcactaagcagtttcagagacacaaaaagaaaaaggg 1449 Query: 112 aaaatatatcaaatgatacaccagtaagaaaacttagcactgatcaccagacggcangac 171 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 1448 gaaatatatcaaatgatacaccagtaagagaacttagcactgatcaccagacggcaagac 1389 Query: 172 cagtgtagcacgtcgcagcgatgtcgaatgc-tgttcttanttnntaggagcaaaagaac 230 |||||||||||||||||||||||| |||||| | |||||| || ||||||||||| | Sbjct: 1388 cagtgtagcacgtcgcagcgatgttgaatgcttcttcttacttccgaggagcaaaaggat 1329 Query: 231 cccgccttgccgaacttgagaggcatttgaccaagaa-aaccccgagtantgatgtcttg 289 |||||||||||||||||||||||||| ||||||||| ||||| | | |||||||||| Sbjct: 1328 cccgccttgccgaacttgagaggcatcagaccaagaagaaccctcaat-gtgatgtcttg 1270 Query: 290 ttcttaggcngatgccttgtcgaacttgaggggc 323 |||||| || |||||||||||||||||||||||| Sbjct: 1269 ttcttaagcagatgccttgtcgaacttgaggggc 1236
>dbj|D63835.1|BLYSAS Barley mRNA for S-adenosylmethionine synthetase, complete cds Length = 1353 Score = 99.6 bits (50), Expect = 5e-18 Identities = 95/108 (87%), Gaps = 2/108 (1%) Strand = Plus / Minus Query: 217 aggagcaaaagaaccccgccttgccgaacttgagaggcatttgaccaagaa-aaccccga 275 ||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||| | Sbjct: 1315 aggagcaaaaggatcccgccttgccgaacttgagaggcatcagaccaagaagaaccctca 1256 Query: 276 gtantgatgtcttgttcttaggcngatgccttgtcgaacttgaggggc 323 | ||||||||| |||||| || |||||||||||||||||||||||| Sbjct: 1255 at-gtgatgtcttcttcttaagcagatgccttgtcgaacttgaggggc 1209
>emb|AM039894.1| Hordeum vulgare mRNA for putative AdoMet synthase 2 (sam2 gene) Length = 1297 Score = 73.8 bits (37), Expect = 3e-10 Identities = 42/44 (95%) Strand = Plus / Minus Query: 280 tgatgtcttgttcttaggcngatgccttgtcgaacttgaggggc 323 ||||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 1275 tgatgtcttcttcttaggcagatgccttgtcgaacttgaggggc 1232
>gb|AC161530.4| Mus musculus chromosome 18, clone RP24-339M16, complete sequence Length = 168512 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaatatat 120 ||||||||||||||||||||||| Sbjct: 18493 aaaaagaaaaagggaaaatatat 18471
>dbj|AK155819.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730226K18 product:unclassifiable, full insert sequence Length = 2029 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaatatat 120 ||||||||||||||||||||||| Sbjct: 1361 aaaaagaaaaagggaaaatatat 1339
>gb|AC158568.6| Mus musculus chromosome 18, clone RP24-249D7, complete sequence Length = 151345 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaatatat 120 ||||||||||||||||||||||| Sbjct: 45284 aaaaagaaaaagggaaaatatat 45306
>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence Length = 186413 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Minus Query: 95 cacaaaaagaaaaagggaaaata 117 ||||||||||||||||||||||| Sbjct: 144139 cacaaaaagaaaaagggaaaata 144117
>gb|AC117540.9| Mus musculus chromosome 18, clone RP23-131B4, complete sequence Length = 198854 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaatatat 120 ||||||||||||||||||||||| Sbjct: 114524 aaaaagaaaaagggaaaatatat 114546
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 cacaaaaagaaaaagggaaaat 116 |||||||||||||||||||||| Sbjct: 2181191 cacaaaaagaaaaagggaaaat 2181212
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 cacaaaaagaaaaagggaaaat 116 |||||||||||||||||||||| Sbjct: 2181173 cacaaaaagaaaaagggaaaat 2181194
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 cacaaaaagaaaaagggaaaat 116 |||||||||||||||||||||| Sbjct: 2229524 cacaaaaagaaaaagggaaaat 2229545
>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 10/11 Length = 348946 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 92 agacacaaaaagaaaaagggaa 113 |||||||||||||||||||||| Sbjct: 338587 agacacaaaaagaaaaagggaa 338608
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 cacaaaaagaaaaagggaaaat 116 |||||||||||||||||||||| Sbjct: 2225834 cacaaaaagaaaaagggaaaat 2225855
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 cacaaaaagaaaaagggaaaat 116 |||||||||||||||||||||| Sbjct: 2181067 cacaaaaagaaaaagggaaaat 2181088
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 cacaaaaagaaaaagggaaaat 116 |||||||||||||||||||||| Sbjct: 2265080 cacaaaaagaaaaagggaaaat 2265101
>emb|CT010519.5| Mouse DNA sequence from clone RP23-305D10 on chromosome 14, complete sequence Length = 224463 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 aaaagaaaaagggaaaatata 119 ||||||||||||||||||||| Sbjct: 172351 aaaagaaaaagggaaaatata 172331
>gb|AC128673.4| Homo sapiens BAC clone RP11-1195P3 from UL, complete sequence Length = 209514 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 agagacacaaaaagaaaaagg 110 ||||||||||||||||||||| Sbjct: 115699 agagacacaaaaagaaaaagg 115719
>gb|DQ334121.1| Drosophila miranda CG17758 gene, partial cds Length = 1068 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 caaagaatatgatgagcgaaa 41 ||||||||||||||||||||| Sbjct: 652 caaagaatatgatgagcgaaa 632
>emb|AL662796.6| Human DNA sequence from clone XXbac-290C9 on chromosome 6 Contains the 5' end of the C6orf10 gene for chromosome 6 open reading frame 10, the HCG23 gene for HLA complex group 23, 2 fragments of BTNL2 gene for butyrophilin-like 2 (MHC class II associated), the HLA-DRA gene for the major histocompatibility complex, class II, DR alpha (HLA-DRA1) and one CpG island, complete sequence Length = 130102 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 aaaagaaaaagggaaaatatatcaa 123 |||| |||||||||||||||||||| Sbjct: 32094 aaaaaaaaaagggaaaatatatcaa 32118
>emb|AL662928.4| Human DNA sequence from clone RP11-92H11 on chromosome 1, complete sequence Length = 88568 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 97 caaaaagaaaaagggaaaatatatcaaat 125 |||||| |||||| ||||||||||||||| Sbjct: 79679 caaaaaaaaaaagagaaaatatatcaaat 79651
>emb|AL603789.3| Human DNA sequence from clone RP11-415G4 on chromosome 13, complete sequence Length = 129361 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaatat 118 ||||||||||||||||||||| Sbjct: 80657 aaaaagaaaaagggaaaatat 80637
>gb|AC165284.2| Mus musculus BAC clone RP24-378E14 from chromosome 14, complete sequence Length = 202193 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 aaaagaaaaagggaaaatata 119 ||||||||||||||||||||| Sbjct: 190825 aaaagaaaaagggaaaatata 190845
>gb|AC074135.3| Homo sapiens chromosome 19 clone CTD-2291D10, complete sequence Length = 121050 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 agagacacaaaaagaaaaagg 110 ||||||||||||||||||||| Sbjct: 88231 agagacacaaaaagaaaaagg 88251
>emb|BX908732.13| Human DNA sequence from clone DAMA-178J18 on chromosome 6, complete sequence Length = 101860 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 aaaagaaaaagggaaaatatatcaa 123 |||| |||||||||||||||||||| Sbjct: 25853 aaaaaaaaaagggaaaatatatcaa 25877
>gb|AC036178.11| Homo sapiens chromosome 18, clone RP11-666N19, complete sequence Length = 135640 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 gaaaaagggaaaatatatcaa 123 ||||||||||||||||||||| Sbjct: 46734 gaaaaagggaaaatatatcaa 46754
>emb|AL645824.12| Mouse DNA sequence from clone RP23-200O20 on chromosome 4, complete sequence Length = 145443 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaatat 118 ||||||||||||||||||||| Sbjct: 94738 aaaaagaaaaagggaaaatat 94718
>gb|AC103636.11| Mus musculus chromosome 5, clone RP24-373A18, complete sequence Length = 185727 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 90207 acaaaaagaaaaagggaaaa 90226
>ref|NM_179175.1| Arabidopsis thaliana BGAL3; beta-galactosidase/ sugar binding AT4G36360 (BGAL3) transcript variant AT4G36360.2 mRNA, complete cds Length = 3165 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 3099 aaaaagaaaaagggaaaata 3080
>ref|NM_119799.2| Arabidopsis thaliana BGAL3; beta-galactosidase/ sugar binding AT4G36360 (BGAL3) transcript variant AT4G36360.1 mRNA, complete cds Length = 3168 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 3102 aaaaagaaaaagggaaaata 3083
>gb|AC170265.4| Mus musculus BAC RP23-54H4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210754 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 cacaaaaagaaaaagggaaa 114 |||||||||||||||||||| Sbjct: 107845 cacaaaaagaaaaagggaaa 107826
>gb|AC101778.9| Mus musculus chromosome 1, clone RP24-125B8, complete sequence Length = 173893 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 26343 acaaaaagaaaaagggaaaa 26362
>gb|U41026.1| Caenorhabditis elegans cosmid C28G1, complete sequence Length = 27364 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gcatttgaccaagaaaaccc 272 |||||||||||||||||||| Sbjct: 18910 gcatttgaccaagaaaaccc 18929
>gb|AF133093.2| Mus musculus chromosome X clones CT7-116D19, CT7-309B4, CT7-567G9, MGSPI-15528, MGSPI-15530 complete sequence Length = 235497 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gaacttgagaggcatttgac 261 |||||||||||||||||||| Sbjct: 143349 gaacttgagaggcatttgac 143330
>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence Length = 252384 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 215588 acaaaaagaaaaagggaaaa 215569
>gb|AC079365.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-172N5, complete sequence Length = 191310 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 agaaaacttagcactgatca 157 |||||||||||||||||||| Sbjct: 161084 agaaaacttagcactgatca 161103
>gb|AC132003.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091D07, complete sequence Length = 144652 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 116323 aaaaagaaaaagggaaaata 116342
>emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on chromosome 13, complete sequence Length = 188616 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gagacacaaaaagaaaaagggaaa 114 ||||||||||| |||||||||||| Sbjct: 153219 gagacacaaaatgaaaaagggaaa 153196
>gb|AC126042.3| Mus musculus BAC clone RP24-303J10 from chromosome 18, complete sequence Length = 173064 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 7758 acaaaaagaaaaagggaaaa 7777
>gb|AC124367.4| Mus musculus BAC clone RP24-545D20 from chromosome 18, complete sequence Length = 169912 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 56424 acaaaaagaaaaagggaaaa 56405
>gb|AC132395.3| Mus musculus BAC clone RP23-391F17 from chromosome 18, complete sequence Length = 212786 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 agagacacaaaaagaaaaag 109 |||||||||||||||||||| Sbjct: 33573 agagacacaaaaagaaaaag 33592
>gb|AC092327.4| Homo sapiens chromosome 16 clone RP11-158I3, complete sequence Length = 189756 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 62283 acaaaaagaaaaagggaaaa 62264
>gb|AC127326.4| Mus musculus BAC clone RP23-251C4 from 8, complete sequence Length = 207802 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 165202 aaaaagaaaaagggaaaata 165221
>gb|AC136604.2| Homo sapiens chromosome 5 clone RP11-1379J22, complete sequence Length = 171812 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 agacacaaaaagaaaaagggaaaa 115 |||||||||| ||||||||||||| Sbjct: 98172 agacacaaaatgaaaaagggaaaa 98195
>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence Length = 211181 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gagacacaaaaagaaaaagggaaa 114 ||||||||||| |||||||||||| Sbjct: 109310 gagacacaaaatgaaaaagggaaa 109287
>emb|BX323064.13| Zebrafish DNA sequence from clone DKEYP-13D12 in linkage group 2, complete sequence Length = 170480 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aaaagggaaaatatatcaaa 124 |||||||||||||||||||| Sbjct: 53217 aaaagggaaaatatatcaaa 53236
>emb|AL627324.12| Human DNA sequence from clone RP11-47F23 on chromosome 9, complete sequence Length = 29687 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 gaaaaagggaaaatatatcaaatg 126 ||||||| |||||||||||||||| Sbjct: 28779 gaaaaagagaaaatatatcaaatg 28756
>emb|AL592428.6| Human DNA sequence from clone RP11-116P2 on chromosome 6, complete sequence Length = 86630 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 agacacaaaaagaaaaagggaaaa 115 ||||| |||||||||||||||||| Sbjct: 37123 agacagaaaaagaaaaagggaaaa 37100
>emb|AL591046.4| Human DNA sequence from clone RP11-96O10 on chromosome 6, complete sequence Length = 194466 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 caaaaagaaaaagggaaaatatat 120 |||||||||||||| ||||||||| Sbjct: 90162 caaaaagaaaaaggaaaaatatat 90139
>emb|AL513124.9| Human DNA sequence from clone RP11-401G5 on chromosome 9 Contains a uncharacterized hypothalamus protein HT007 pseudogene, complete sequence Length = 172766 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 gaaaaagggaaaatatatcaaatg 126 ||||||| |||||||||||||||| Sbjct: 1092 gaaaaagagaaaatatatcaaatg 1069
>emb|AL133517.11| Human DNA sequence from clone RP4-730K3 on chromosome 1p12-13.3 Contains the 3' end of the gene for membrane-associated guanylate kinase-related 3 (MAGI-3), the 3' end of the PHTF1 gene for putative homeodomain transcription factor 1 and a ribosomal protein S2 (RPS2) pseudogene, complete sequence Length = 125653 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aaaagaaaaagggaaaatat 118 |||||||||||||||||||| Sbjct: 76404 aaaagaaaaagggaaaatat 76423
>gb|AC137988.2| Trypanosoma cruzi strain Brener chromosome 3 clone cosmids 1o17, 1m17, 1b21, 2n11, complete sequence Length = 105864 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 14665 aaaaagaaaaagggaaaata 14646
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2 Length = 198354 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 193011 aaaaagaaaaagggaaaata 192992
>gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosome 1, complete sequence Length = 186662 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 64696 acaaaaagaaaaagggaaaa 64677
>gb|BC035167.2| Homo sapiens ELL associated factor 1, mRNA (cDNA clone IMAGE:5265683) Length = 2064 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 1106 acaaaaagaaaaagggaaaa 1125
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85 Length = 198750 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 57717 aaaaagaaaaagggaaaata 57736
>emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project) Length = 94695 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 80995 aaaaagaaaaagggaaaata 81014
>emb|BX539326.7| Zebrafish DNA sequence from clone DKEY-64H4 in linkage group 17, complete sequence Length = 143577 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aaaagaaaaagggaaaatat 118 |||||||||||||||||||| Sbjct: 79431 aaaagaaaaagggaaaatat 79450
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aagaaaacttagcactgatc 156 |||||||||||||||||||| Sbjct: 326164 aagaaaacttagcactgatc 326145
>ref|NM_032682.4| Homo sapiens forkhead box P1 (FOXP1), transcript variant 1, mRNA Length = 6222 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 acacaaaaagaaaaagggaaaata 117 ||||||||||||||||| |||||| Sbjct: 4532 acacaaaaagaaaaaggaaaaata 4509
>dbj|AK023217.1| Homo sapiens cDNA FLJ13155 fis, clone NT2RP3003433 Length = 2363 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 1420 acaaaaagaaaaagggaaaa 1439
>gb|AC121493.1| Homo sapiens chromosome 3 clone RP11-88H12, complete sequence Length = 178780 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 aaagaaaaagggaaaatata 119 |||||||||||||||||||| Sbjct: 21613 aaagaaaaagggaaaatata 21632
>dbj|AB226158.1| Aspergillus oryzae cDNA, contig sequence: AoEST3016 Length = 978 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 acacaaaaagaaaaagggaa 113 |||||||||||||||||||| Sbjct: 77 acacaaaaagaaaaagggaa 58
>gb|AC104331.2| Homo sapiens chromosome 3 clone RP11-543A18, complete sequence Length = 201049 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 aaagaaaaagggaaaatata 119 |||||||||||||||||||| Sbjct: 178764 aaagaaaaagggaaaatata 178783
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 195413 aaaaagaaaaagggaaaata 195394
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acacaaaaagaaaaagggaa 113 |||||||||||||||||||| Sbjct: 3156635 acacaaaaagaaaaagggaa 3156654
>gb|AC022394.7| Homo sapiens chromosome 10 clone RP11-325M24, complete sequence Length = 154064 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cagagacacaaaaagaaaaa 108 |||||||||||||||||||| Sbjct: 66810 cagagacacaaaaagaaaaa 66829
>dbj|AK144529.1| Mus musculus 14 days embryo lung cDNA, RIKEN full-length enriched library, clone:G630090I18 product:unclassifiable, full insert sequence Length = 1168 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 gagacacaaaaagaaaaagggaaa 114 ||||||||||| |||||||||||| Sbjct: 130 gagacacaaaatgaaaaagggaaa 153
>dbj|AK157976.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930013B08 product:hypothetical protein, full insert sequence Length = 3781 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gagacacaaaaagaaaaagggaaa 114 ||||||||||| |||||||||||| Sbjct: 607 gagacacaaaatgaaaaagggaaa 584
>ref|NM_033083.5| Homo sapiens ELL associated factor 1 (EAF1), mRNA Length = 4705 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 3749 acaaaaagaaaaagggaaaa 3768
>gb|AF250920.1|AF250920 Homo sapiens 12CC4 mRNA, complete cds Length = 4954 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 acacaaaaagaaaaagggaaaata 117 ||||||||||||||||| |||||| Sbjct: 4424 acacaaaaagaaaaaggaaaaata 4401
>dbj|AK222140.1| Arabidopsis thaliana mRNA for beta-galactosidase like protein, complete cds, clone: RAFL22-97-N22 Length = 1445 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 1435 aaaaagaaaaagggaaaata 1416
>gb|AC103586.3| Homo sapiens chromosome 3 clone RP11-79P21, complete sequence Length = 174912 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acacaaaaagaaaaagggaaaata 117 ||||||||||||||||| |||||| Sbjct: 73236 acacaaaaagaaaaaggaaaaata 73259
>gb|AC007485.10| Homo sapiens chromosome 17, clone RP11-257O5, complete sequence Length = 164731 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 agagacacaaaaagaaaaag 109 |||||||||||||||||||| Sbjct: 137793 agagacacaaaaagaaaaag 137774
>gb|AC093726.3| Homo sapiens BAC clone RP11-5C23 from 7, complete sequence Length = 159041 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 71605 acaaaaagaaaaagggaaaa 71586
>ref|NM_077097.2| Caenorhabditis elegans UBiquitin Conjugating enzyme family member (ubc-23) (ubc-23) mRNA, complete cds Length = 1641 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gcatttgaccaagaaaaccc 272 |||||||||||||||||||| Sbjct: 451 gcatttgaccaagaaaaccc 470
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 15372693 aaaaagaaaaagggaaaata 15372712
>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence Length = 172400 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 109879 acaaaaagaaaaagggaaaa 109860
>gb|AC108030.4| Homo sapiens BAC clone RP11-100C9 from 4, complete sequence Length = 147091 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 agacacaaaaagaaaaagggaaaa 115 ||||| |||||||||||||||||| Sbjct: 108024 agacagaaaaagaaaaagggaaaa 108001
>gb|AC023399.4|AC023399 Homo sapiens chromosome 17, clone RP11-780O8, complete sequence Length = 175446 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 agagacacaaaaagaaaaag 109 |||||||||||||||||||| Sbjct: 117351 agagacacaaaaagaaaaag 117370
>gb|AC102373.13| Mus musculus chromosome 3, clone RP23-263O17, complete sequence Length = 198848 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 aaaatatatcaaatgataca 131 |||||||||||||||||||| Sbjct: 62269 aaaatatatcaaatgataca 62250
>gb|AC154850.2| Mus musculus BAC clone RP23-36B4 from chromosome 9, complete sequence Length = 247708 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 144091 aaaaagaaaaagggaaaata 144110
>gb|AC040170.9| Homo sapiens chromosome 16 clone RP11-514D23, complete sequence Length = 173012 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 16899 acaaaaagaaaaagggaaaa 16918
>gb|AC137807.2| Homo sapiens chromosome 5 clone RP11-909A9, complete sequence Length = 70982 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 agacacaaaaagaaaaagggaaaa 115 |||||||||| ||||||||||||| Sbjct: 32161 agacacaaaatgaaaaagggaaaa 32138
>gb|AC007556.3| Homo sapiens BAC clone RP11-18C9 from 2, complete sequence Length = 167358 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 caaaaagaaaaagggaaaatatat 120 ||||||||||||||||||| |||| Sbjct: 133223 caaaaagaaaaagggaaaagatat 133200
>gb|AC069298.8|AC069298 Homo sapiens chromosome 3 clone RP11-56K23, complete sequence Length = 158073 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acacaaaaagaaaaagggaaaata 117 ||||||||||||||||| |||||| Sbjct: 111202 acacaaaaagaaaaaggaaaaata 111225
>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence Length = 173842 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 51360 acaaaaagaaaaagggaaaa 51341
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aaaagaaaaagggaaaatat 118 |||||||||||||||||||| Sbjct: 457912 aaaagaaaaagggaaaatat 457893
>dbj|AK026898.1| Homo sapiens cDNA: FLJ23245 fis, clone COL02931 Length = 1851 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 acacaaaaagaaaaagggaaaata 117 ||||||||||||||||| |||||| Sbjct: 1332 acacaaaaagaaaaaggaaaaata 1309
>emb|X63509.1|MMCAML14 Mus musculus partial L1 gene, exons 2-4 Length = 5657 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gaacttgagaggcatttgac 261 |||||||||||||||||||| Sbjct: 2418 gaacttgagaggcatttgac 2437
>gb|AC102534.10| Mus musculus chromosome 8, clone RP23-57G23, complete sequence Length = 223998 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 109763 aaaaagaaaaagggaaaata 109782
>dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-360J22, complete sequence Length = 159320 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 75268 aaaaagaaaaagggaaaata 75287
>dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-278C16, complete sequence Length = 157800 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 153573 aaaaagaaaaagggaaaata 153592
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 15455630 aaaaagaaaaagggaaaata 15455649
>gb|AC139182.4| Mus musculus BAC clone RP24-125O22 from 8, complete sequence Length = 159792 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 141140 aaaaagaaaaagggaaaata 141121
>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence Length = 220038 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaaaaagaaaaagggaaaa 115 |||||||||||||||||||| Sbjct: 94594 acaaaaagaaaaagggaaaa 94613
>emb|AL672094.11| Mouse DNA sequence from clone RP23-373N8 on chromosome X, complete sequence Length = 147138 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gaacttgagaggcatttgac 261 |||||||||||||||||||| Sbjct: 132130 gaacttgagaggcatttgac 132111
>emb|AL359174.14| Human DNA sequence from clone RP11-423D17 on chromosome 6, complete sequence Length = 146372 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 32429 aaaaagaaaaagggaaaata 32448
>dbj|AB041992.1| Homo sapiens genomic DNA, chromosome 6q21, clone:576A9, complete sequence Length = 112519 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 108170 aaaaagaaaaagggaaaata 108189
>dbj|AP002530.2| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 3/4 Length = 300000 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 8465 aaaaagaaaaagggaaaata 8484
>dbj|AB041512.1| Homo sapiens genomic DNA, chromosome 6q21, clone:520L4, complete sequence Length = 102910 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaaaagaaaaagggaaaata 117 |||||||||||||||||||| Sbjct: 28449 aaaaagaaaaagggaaaata 28468 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,457,571 Number of Sequences: 3902068 Number of extensions: 3457571 Number of successful extensions: 78695 Number of sequences better than 10.0: 101 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78239 Number of HSP's gapped (non-prelim): 453 length of query: 323 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 301 effective length of database: 17,147,199,772 effective search space: 5161307131372 effective search space used: 5161307131372 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)