>RL28_DROME (Q9VZS5) 60S ribosomal protein L28|
          Length = 144

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -3

Query: 631 NAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKE-MTVVLSTTKSKKQNKPAAFT 455
           + K  FS EPNNL +V SY+YSG+ +KKT+ V PAA+K+  T VL   K K   +PA  T
Sbjct: 24  DVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLK--KGKYAQRPAKNT 81

Query: 454 HKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKK 296
            +   +   R+  K +KN +  + YR DLT+ AL R SAV RS + A    KK
Sbjct: 82  VRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKK 134

>RL28_SPOFR (Q962T2) 60S ribosomal protein L28|
          Length = 139

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
 Frame = -3

Query: 631 NAKVQFSKEPNNLYNVHSYKYSGLANKKTV-TVQPAAEKEMTVVLSTTKSKKQNKPAAFT 455
           N K  FSKEPNN+ N++SY+Y+GL  KK V  V+    K  TVV    K+K  NKPA   
Sbjct: 22  NIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVYK--KAKATNKPA--- 76

Query: 454 HKTVMRKEFRKMAK----AVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKS 308
            K  +R++F+  A+     VK  +  N+YR DL+K  L R SA+ RS +  K+
Sbjct: 77  -KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128

>RL28_MOUSE (P41105) 60S ribosomal protein L28|
          Length = 136

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 40/100 (40%), Positives = 61/100 (61%)
 Frame = -3

Query: 625 KVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKT 446
           K  +S EPNNL   +S++Y+GL ++KTV V+PAA+ +  VV+   +S  Q KPA    +T
Sbjct: 21  KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRS-GQRKPATSYVRT 79

Query: 445 VMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 326
            + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 80  TINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_HUMAN (P46779) 60S ribosomal protein L28|
          Length = 136

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 40/100 (40%), Positives = 61/100 (61%)
 Frame = -3

Query: 625 KVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKT 446
           K  +S EPNNL   +S++Y+GL ++KTV V+PAA+ +  VV+   +S  Q KPA    +T
Sbjct: 21  KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRS-GQRKPATSYVRT 79

Query: 445 VMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 326
            + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 80  TINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_RAT (P17702) 60S ribosomal protein L28|
          Length = 136

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 37/100 (37%), Positives = 58/100 (58%)
 Frame = -3

Query: 625 KVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKT 446
           K  +S EPNNL   +S++Y+GL ++KTV V+   + +  VV+   +S  Q KPA    +T
Sbjct: 21  KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSG-QRKPATSYVRT 79

Query: 445 VMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 326
            + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 80  TINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>YFF6_SCHPO (O14069) Probable 60S ribosomal protein C1687.06c|
          Length = 134

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
 Frame = -3

Query: 622 VQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTV 443
           +QF++EP N+   ++ ++SGL N K V VQ A      V+++ T  K   KPA    K V
Sbjct: 28  IQFNREPVNVSGKNAQRFSGLCNDKAVGVQ-ANSPRGVVLITKTNPKNAQKPAKLFRKDV 86

Query: 442 M-RKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKS 308
           +     RK  K++  ++    YR DL K ++AR SA+  S +  K+
Sbjct: 87  IANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132

>RL28_DICDI (Q9GS21) 60S ribosomal protein L28|
          Length = 132

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = -3

Query: 634 SNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFT 455
           S+  +  S EP NL N +S KYSGLA + T+ V     K   VV+S+   KK   PA   
Sbjct: 19  SSHGLTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSK 75

Query: 454 HKTVMRK-EFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKKKNRQ 284
             T       RK A+ VK   +   Y P+L   AL RL  V  +L+ AK    +K ++
Sbjct: 76  KTTTFSTVNTRKTARFVKTLATQ--YAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131

>RL28_CAEEL (Q21930) 60S ribosomal protein L28|
          Length = 125

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 38/108 (35%), Positives = 56/108 (51%)
 Frame = -3

Query: 619 QFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVM 440
           +FS E  NL  V+S KYSGLANK  + V  AA+     V+ +TK++K     A T  T+ 
Sbjct: 25  RFSTEKFNLKKVNSPKYSGLANKHAIDVSAAAKG----VVVSTKNEKGRPAKAVTTSTLS 80

Query: 439 RKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKK 296
           +     + +  KN   + +      K A  R +A+ RS QV K+ V+K
Sbjct: 81  KTPVASVRRLAKNAGFNKF-----NKLAQRRAAAIVRS-QVKKAKVQK 122

>H1A_XENLA (P06892) Histone H1A|
          Length = 209

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = -3

Query: 559 ANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYY 380
           A KK   +   A+K       T KS K+ K  +   K+   K+ +K AKA K+       
Sbjct: 122 AAKKKAPLAAEAKKPAAAAKKTAKSPKKPKKVSAAAKSP--KKLKKPAKAAKSPAKKTAV 179

Query: 379 RPDLTKPALARLSAVYRSLQVAKSGVKKK 293
           +P +   + A+  A    +  AK    KK
Sbjct: 180 KPKVAAKSPAKAKAAKPKVAKAKKAAPKK 208

>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 458  HPQDCHAQGVPQDGQGCQEPGXXXXXXXXXXXACSCKTERSLPQPPGCQVWCQE 297
            H Q+CH  GV    + CQEPG           + +       P+PP    +C +
Sbjct: 1221 HCQNCHCDGVNLTCEACQEPGGLVAPPTDAPVSSTTPYVEDTPEPPLHNFYCSK 1274

>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)|
          Length = 513

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 569 LWPG---KQEDCDGAACC*EGDDCGPLHNQVKEAEQACGLHPQDCHAQGVPQDGQGCQE 402
           +W G    ++DC G  CC EG  C  L     + ++ C  +P D   +G    G  C+E
Sbjct: 78  IWTGGDKHKKDCGGTGCCKEGQYCTKL-----DGKEQCVYYPDD---KGPQCGGSFCRE 128

>CSTN2_RAT (Q8VDA1) Calsyntenin-2 precursor|
          Length = 965

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +2

Query: 80  VESQKWWK*LRGFATVMGTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKI 259
           +ESQK    L+  A   G DI   E+   GI+ +H + S SIL+ +   +GNINQ + K+
Sbjct: 531 MESQKVISCLQ--ACKEGLDINSLESLGRGIK-YHFNPSQSILVMEGDDIGNINQALQKV 587

Query: 260 S 262
           S
Sbjct: 588 S 588

>SPEA_PROMA (Q7VEG4) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)|
          Length = 648

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
 Frame = -3

Query: 610 KEPNNLYNVHSY--KYSGLANKKTVTVQPAAEK----EMTVVLSTTKSKKQNKPAAFTHK 449
           K+  +LY +  +  +Y  + +   VTV P  ++    E+T +L   K +  N P      
Sbjct: 16  KDSCSLYGLDLWGEEYFSINDSGNVTVSPQGKEGNSLELTHLLEELKGRNLNTPLLLRFD 75

Query: 448 TVMRKEFRKMAKAVKNQVSDNYYRPD 371
            ++    +K+ +A +N ++   Y  D
Sbjct: 76  DILEDRLKKLHQAFENAINQYGYNND 101

>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)|
          Length = 1328

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 538 VQPAAEKEMTVVLSTTK--SKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLT 365
           ++P AE  +TV   T +  S   +KP   THKTV+ K  +     V++      + P  T
Sbjct: 445 LKPGAEYIITVYAVTGRGDSPASSKPVTVTHKTVVDKPTQLQVTDVQDHSIQVRWMPSST 504

Query: 364 KPALARLSAVYRSLQVAKSGV 302
            P        YR   V KSGV
Sbjct: 505 -PVTG-----YRVTSVPKSGV 519

>RL23A_TRYBB (P41165) 60S ribosomal protein L23a (L25)|
          Length = 164

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
 Frame = -3

Query: 502 LSTTKSKK---QNKPAAF-----THKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALAR 347
           L+T K+ K   +N    F      +KT ++K  RK+ + VK    +   RPD  K A  R
Sbjct: 89  LTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQ-VKTVKVNTLIRPDGLKKAYIR 147

Query: 346 LSAVYRSLQVA 314
           LSA Y +L  A
Sbjct: 148 LSASYDALDTA 158

>CSTN2_MOUSE (Q9ER65) Calsyntenin-2 precursor|
          Length = 966

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 23/61 (37%), Positives = 35/61 (57%)
 Frame = +2

Query: 80  VESQKWWK*LRGFATVMGTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKI 259
           +ESQK    L+  A   G DI   E+   GI+ +H + S SIL+ +   +GNIN+ + K+
Sbjct: 531 MESQKVISCLQ--ACKEGLDINSLESLGRGIK-YHFNPSQSILVMEGDDIGNINRALQKV 587

Query: 260 S 262
           S
Sbjct: 588 S 588

>CSTN2_HUMAN (Q9H4D0) Calsyntenin-2 precursor|
          Length = 955

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 23/61 (37%), Positives = 35/61 (57%)
 Frame = +2

Query: 80  VESQKWWK*LRGFATVMGTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKI 259
           +ESQK    L+  A   G DI   E+   GI+ +H + S SIL+ +   +GNIN+ + K+
Sbjct: 529 MESQKVISCLQ--ACKEGLDINSLESLGQGIK-YHFNPSQSILVMEGDDIGNINRALQKV 585

Query: 260 S 262
           S
Sbjct: 586 S 586


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,446,284
Number of Sequences: 219361
Number of extensions: 1473335
Number of successful extensions: 4280
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4269
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)