Clone Information

BLAST Search Result

Clone Name	rbasdh07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY247791.1\| Hordeum vulgare vacuolar Na+/H+ antiporter (NHX2)...	950	0.0
2	gb\|AY848951.1\| Thinopyrum elongatum Na+/H+ antiporter (NHX1) mRN...	688	0.0
3	gb\|BT009501.1\| Triticum aestivum clone wr1.pk0083.f3:fis, full i...	628	e-177
4	gb\|AF507044.1\| Lophopyrum elongatum Na+/H+ antiporter NHX1 (NHX1...	620	e-174
5	gb\|AY040245.1\| Triticum aestivum Na+/H+ antiporter (NHX1) mRNA, ...	611	e-172
6	gb\|AY296910.1\| Triticum aestivum Na+/H+ antiporter mRNA, complet...	595	e-167
7	dbj\|AK066168.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	101	2e-18
8	gb\|AC148814.1\| Oryza sativa (japonica cultivar-group) chromosome...	96	1e-16
9	gb\|AY360145.1\| Oryza sativa (japonica cultivar-group) Na+/H+ exc...	96	1e-16
10	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
11	dbj\|AK104336.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	96	1e-16
12	gb\|AY105332.1\| Zea mays PCO131050 mRNA sequence	62	2e-06
13	gb\|AY270037.1\| Zea mays Na+/H+ antiporter NHX2 mRNA, complete cds	58	3e-05
14	gb\|AY730277.1\| Iris lactea Na+/H+ antiporter mRNA, complete cds	50	0.007
15	gb\|DQ372061.1\| Hordeum vulgare Na+/H+ antiporter (NHX3) mRNA, co...	48	0.028
16	gb\|AY109416.1\| Zea mays CL694_1 mRNA sequence	46	0.11
17	gb\|AY461512.1\| Triticum aestivum Na+/H+ antiporter precursor mRN...	42	1.7
18	ref\|NM_187872.1\| Oryza sativa (japonica cultivar-group), Ozsa831...	42	1.7
19	gb\|AC099629.6\| Mus musculus chromosome 15, clone RP24-86K17, com...	42	1.7
20	gb\|AC124684.3\| Mus musculus BAC clone RP24-375D13 from chromosom...	42	1.7
21	gb\|BC053784.1\| Xenopus laevis fructose-1,6-bisphosphatase, mRNA ...	42	1.7
22	dbj\|AK061932.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
23	gb\|AC025538.6\| Homo sapiens BAC clone RP11-274J2 from 4, complet...	42	1.7
24	gb\|AE009951.2\| Fusobacterium nucleatum subsp. nucleatum ATCC 255...	42	1.7
25	dbj\|AK067133.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
26	gb\|AY270040.1\| Zea mays Na+/H+ antiporter NHX5 mRNA, complete cds	42	1.7
27	gb\|AC147236.3\| Mus musculus BAC clone RP23-357C20 from 1, comple...	42	1.7
28	gb\|AC104882.30\| Mus musculus chromosome 8, clone RP23-401L9, com...	40	6.7
29	emb\|AL139378.15\| Human DNA sequence from clone RP11-271B5 on chr...	40	6.7
30	emb\|AL031258.12\|HS335H7 Human DNA sequence from clone LA16c-335H...	40	6.7
31	gb\|AE006464.1\| Homo sapiens 16p13.3 sequence section 3 of 8	40	6.7
32	gb\|AC010562.5\| Drosophila melanogaster 3L BAC RP98-21K18 (Roswel...	40	6.7
33	gb\|AC102341.10\| Mus musculus chromosome 8, clone RP23-214E1, com...	40	6.7
34	gb\|AY184476.1\| Hordeum brevisubulatum Na+/H+ antiporter (NHX1) m...	40	6.7
35	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.7
36	gb\|AY144442.1\| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part...	40	6.7
37	dbj\|AP000816.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.7
38	gb\|AE003560.3\| Drosophila melanogaster chromosome 3L, section 25...	40	6.7
39	gb\|AY270041.1\| Zea mays Na+/H+ antiporter NHX6 mRNA, complete cds	40	6.7
40	gb\|AC127682.4\| Mus musculus BAC clone RP24-170O17 from 8, comple...	40	6.7
41	gb\|AC151909.5\| Mus musculus BAC clone RP23-60H14 from chromosome...	40	6.7
42	gb\|DQ285410.1\| Hordeum brevisubulatum vacuolar Na+/H+ antiporter...	40	6.7
43	emb\|AL845280.4\| Mouse DNA sequence from clone RP23-265L1 on chro...	40	6.7
44	gb\|AC024092.19\| Homo sapiens 12p BAC RP11-712A21 (Roswell Park C...	40	6.7

>gb|AY247791.1| Hordeum vulgare vacuolar Na+/H+ antiporter (NHX2) mRNA, complete cds
          Length = 1932

 Score =  950 bits (479), Expect = 0.0
 Identities = 492/495 (99%), Gaps = 1/495 (0%)
 Strand = Plus / Minus

                                                                        
Query: 3    ccttttatacatgaatgttaatatcc-gcatccatccgattgttctgtctgaacaacaac 61
            |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 1892 ccttttatacatgaatgttaatatccagcatccatccgattgtgctgtctgaacaacaac 1833

                                                                        
Query: 62   gaattttacagatgaaattgtacatcttgaattgctcccagaaaactacacagcttacat 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 gaattttacagatgaaattgtacatcttgaattgctcccagaaaactacacagcttacat 1773

                                                                        
Query: 122  ggttctacagaaactatctgcataatatacaccaacacatagcaacaatacaccaaaaga 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 ggttctacagaaactatctgcataatatacaccaacacatagcaacaatacaccaaaaga 1713

                                                                        
Query: 182  actcccaagagcaaaattgagtgatatctgaacatttacaagaaatatacttgcaccttc 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 actcccaagagcaaaattgagtgatatctgaacatttacaagaaatatacttgcaccttc 1653

                                                                        
Query: 242  tgagcttcaacttaactacggttttctgcctctgtcacagtgcccaacaagccaggtcca 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 tgagcttcaacttaactacggttttctgcctctgtcacagtgcccaacaagccaggtcca 1593

                                                                        
Query: 302  tggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttcccccaaac 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 tggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttcccccaaac 1533

                                                                        
Query: 362  attgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagttggc 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1532 attgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagatggc 1473

                                                                        
Query: 422  attgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagtccgac 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 attgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagtccgac 1413

                           
Query: 482  cccaacaagctcgcc 496
            |||||||||||||||
Sbjct: 1412 cccaacaagctcgcc 1398

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>gb|AY848951.1| Thinopyrum elongatum Na+/H+ antiporter (NHX1) mRNA, complete cds
          Length = 2024

 Score =  688 bits (347), Expect = 0.0
 Identities = 463/497 (93%), Gaps = 6/497 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttccttttatacatgaatgttaatatccgcatccatccgattgttctgtctgaacaacaa 60
            ||||||||||||||||||| ||||||||     |||| ||||||| ||||||||||| ||
Sbjct: 1907 ttccttttatacatgaatgctaatatccag---catctgattgttttgtctgaacaagaa 1851

                                                                        
Query: 61   cgaattttacagatgaaattgtacatcttgaattgctcccagaaaactacacagcttaca 120
            | || ||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 1850 caaaatttacagattaa-ttgtacatcttgaatggctcccaaaaaactacacagcttaca 1792

                                                                        
Query: 121  tggttctacagaaactatctgcataatatacaccaacacatagcaacaatacaccaaaag 180
            |||||||  |||||||||||||| |||||||||||||| ||||| ||||||| |||||||
Sbjct: 1791 tggttctgtagaaactatctgcacaatatacaccaacaaatagccacaatactccaaaag 1732

                                                                        
Query: 181  aactcccaagagcaaaattgagtgatatctgaacatttacaagaaatatacttgcacctt 240
            |||||| |||||||||| |||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 1731 aactcc-aagagcaaaactgagtgatatctgagcatttacaagaaatacacttgcacctt 1673

                                                                        
Query: 241  ctgagcttca-acttaactacggttttctgcctctgtcacagtgcccaacaagccaggtc 299
            ||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 1672 ctgggcttcagacttaactacggtcttctgcctccgtcacagtgcccaacaagccaggcc 1613

                                                                        
Query: 300  catggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttcccccaa 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 catggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttcccccaa 1553

                                                                        
Query: 360  acattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagttg 419
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 gcattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagttg 1493

                                                                        
Query: 420  gcattgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagtccg 479
            |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1492 gcatggtgagaagatactggaggtttgtttggggggtaagctggcctacatcgaagtccg 1433

                             
Query: 480  accccaacaagctcgcc 496
            |||||||||||||||||
Sbjct: 1432 accccaacaagctcgcc 1416

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>gb|BT009501.1| Triticum aestivum clone wr1.pk0083.f3:fis, full insert mRNA sequence
          Length = 1766

 Score =  628 bits (317), Expect = e-177
 Identities = 457/500 (91%), Gaps = 9/500 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttccttttatacatgaatgttaatatccgcatccatccgattgttctgtctgaacaacaa 60
            ||||||||||||||||||| ||||||||     |||| ||||||||||||||||||  ||
Sbjct: 1704 ttccttttatacatgaatgctaatatccag---catctgattgttctgtctgaacatgaa 1648

                                                                        
Query: 61   cga----attttacagatgaaattgtacatcttgaattgctcccagaaaactacacagct 116
            |||    | ||||||||| || ||||||||||||||| ||||||| ||  ||||||||| 
Sbjct: 1647 cgagattaatttacagattaa-ttgtacatcttgaatggctcccaaaactctacacagcg 1589

                                                                        
Query: 117  tacatggttctacagaaactatctgcataatatacaccaacacatagcaacaatacacca 176
            |||||||| ||  ||||| |||||||| |||||||||||||| ||||| | |||||||| 
Sbjct: 1588 tacatggtcctgtagaaattatctgcacaatatacaccaacaaatagcgataatacaccg 1529

                                                                        
Query: 177  aaagaactcccaagagcaaaattgagtgatatctgaacatttacaagaaatatacttgca 236
            |||||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct: 1528 aaagaa-tcccaagagcaaaactgagtgatatctgagcatttacaagaaatacacttgca 1470

                                                                        
Query: 237  ccttctgagcttcaacttaactacggttttctgcctctgtcacagtgcccaacaagccag 296
            ||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 1469 ccttctgggcttcgacttaactacggtcttctgcctccgtcacagtgcccaacaagccag 1410

                                                                        
Query: 297  gtccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttcccc 356
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 gcccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttcccc 1350

                                                                        
Query: 357  caaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgag 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 caaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgag 1290

                                                                        
Query: 417  ttggcattgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagt 476
            ||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 1289 ttggcatggtgagaagatactgaaggtttgtttggggggtgagctggcctacatcgaagt 1230

                                
Query: 477  ccgaccccaacaagctcgcc 496
            ||||||||||||||||||||
Sbjct: 1229 ccgaccccaacaagctcgcc 1210

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>gb|AF507044.1| Lophopyrum elongatum Na+/H+ antiporter NHX1 (NHX1) mRNA, complete cds
          Length = 1955

 Score =  620 bits (313), Expect = e-174
 Identities = 457/500 (91%), Gaps = 10/500 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttccttttatacatgaatgttaatatccgcatccatccgattgttctgtctgaacaacaa 60
            ||||||||||||||||||| ||||||||     |||| ||||||||||||||||||| ||
Sbjct: 1913 ttccttttatacatgaatgctaatatccag---catctgattgttctgtctgaacaagaa 1857

                                                                        
Query: 61   cga----attttacagatgaaattgtacatcttgaattgctcccagaaaactacacagct 116
            |||    | |||||||||  ||||||||||||||||| ||||||| ||  ||||||||| 
Sbjct: 1856 cgaaattaatttacagat-taattgtacatcttgaatggctcccaaaactctacacagcg 1798

                                                                        
Query: 117  tacatggttctacagaaactatctgcataatatacaccaacacatagcaacaatacacca 176
            |||||||| ||  |||||||||||||| |||||||||||||| ||||| | |||||||| 
Sbjct: 1797 tacatggtcctgtagaaactatctgcacaatatacaccaacaaatagcgataatacaccg 1738

                                                                        
Query: 177  aaagaactcccaagagcaaaattgagtgatatctgaacatttacaagaaatatacttgca 236
            |||||| |||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 1737 aaagaa-tcccaagagcaaaactgagtgatatctgagcatttac-agaaatacacttgca 1680

                                                                        
Query: 237  ccttctgagcttcaacttaactacggttttctgcctctgtcacagtgcccaacaagccag 296
            ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 1679 ccttctgggcttcaacttaactacggtcttctgcctccgtcacagtgcccaacaagccag 1620

                                                                        
Query: 297  gtccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttcccc 356
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 gcccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttcccc 1560

                                                                        
Query: 357  caaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgag 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 caaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgag 1500

                                                                        
Query: 417  ttggcattgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagt 476
            ||||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 1499 ttggcatggtgagaagatactgaaggtttgtttgaggggtgagctggcctacatcgaagt 1440

                                
Query: 477  ccgaccccaacaagctcgcc 496
            |||| |||||||||||||||
Sbjct: 1439 ccgatcccaacaagctcgcc 1420

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>gb|AY040245.1| Triticum aestivum Na+/H+ antiporter (NHX1) mRNA, complete cds
          Length = 2017

 Score =  611 bits (308), Expect = e-172
 Identities = 393/420 (93%), Gaps = 1/420 (0%)
 Strand = Plus / Minus

                                                                        
Query: 77   aattgtacatcttgaattgctcccagaaaactacacagcttacatggttctacagaaact 136
            ||||||||||||||||| ||||||| ||  ||||||||| |||||||| ||  ||||| |
Sbjct: 1973 aattgtacatcttgaatggctcccaaaactctacacagcgtacatggtcctgtagaaatt 1914

                                                                        
Query: 137  atctgcataatatacaccaacacatagcaacaatacaccaaaagaactcccaagagcaaa 196
            ||||||| |||||||||||||| ||||| | |||||||| |||||| |||||||||||||
Sbjct: 1913 atctgcacaatatacaccaacaaatagcgataatacaccgaaagaa-tcccaagagcaaa 1855

                                                                        
Query: 197  attgagtgatatctgaacatttacaagaaatatacttgcaccttctgagcttcaacttaa 256
            | |||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 1854 actgagtgatatctgagcatttacaagaaatacacttgcaccttctgggcttcgacttaa 1795

                                                                        
Query: 257  ctacggttttctgcctctgtcacagtgcccaacaagccaggtccatggacgctcctctct 316
            ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1794 ctacggtcttctgcctccgtcacagtgcccaacaagccaggcccatggacgctcctctct 1735

                                                                        
Query: 317  atgggtgaaccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaac 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 atgggtgaaccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaac 1675

                                                                        
Query: 377  ttatcatcgaacttgcgccatacacgatgaaccgagcgagttggcattgtgagaagatac 436
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1674 ttatcatcgaacttgcgccatacacgatgaaccgagcgagttggcatggtgagaagatac 1615

                                                                        
Query: 437  tggaggtttgtttggggggtcagctggccaacatcgaagtccgaccccaacaagctcgcc 496
            || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 1614 tgaaggtttgtttggggggtgagctggcctacatcgaagtccgaccccaacaagctcgcc 1555

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>gb|AY296910.1| Triticum aestivum Na+/H+ antiporter mRNA, complete cds
          Length = 1847

 Score =  595 bits (300), Expect = e-167
 Identities = 391/420 (93%), Gaps = 1/420 (0%)
 Strand = Plus / Minus

                                                                        
Query: 77   aattgtacatcttgaattgctcccagaaaactacacagcttacatggttctacagaaact 136
            ||||||||||||||||| ||||||| ||  ||||||||| |||||||| ||  ||||| |
Sbjct: 1816 aattgtacatcttgaatggctcccaaaactctacacagcgtacatggtcctgtagaaatt 1757

                                                                        
Query: 137  atctgcataatatacaccaacacatagcaacaatacaccaaaagaactcccaagagcaaa 196
            ||||||| |||||||||||||| ||||| | |||||||| |||||| |||||||||||||
Sbjct: 1756 atctgcacaatatacaccaacaaatagcgataatacaccgaaagaa-tcccaagagcaaa 1698

                                                                        
Query: 197  attgagtgatatctgaacatttacaagaaatatacttgcaccttctgagcttcaacttaa 256
            | |||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 1697 actgagtgatatctgagcatttacaagaaatacacttgcaccttctgggcttcgacttaa 1638

                                                                        
Query: 257  ctacggttttctgcctctgtcacagtgcccaacaagccaggtccatggacgctcctctct 316
            ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1637 ctacggtcttctgcctccgtcacagtgcccaacaagccaggcccatggacgctcctctct 1578

                                                                        
Query: 317  atgggtgaaccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaac 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 atgggtgaaccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaac 1518

                                                                        
Query: 377  ttatcatcgaacttgcgccatacacgatgaaccgagcgagttggcattgtgagaagatac 436
            |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct: 1517 ttatcatcgaacttgcgccatacacgatgagccgagcgagtcggcatggtgagaagatac 1458

                                                                        
Query: 437  tggaggtttgtttggggggtcagctggccaacatcgaagtccgaccccaacaagctcgcc 496
            || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 1457 tgaaggtttgtttggggggtgagctggcctacatcgaagtccgaccccaacaagctcgcc 1398

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>dbj|AK066168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055J22, full
            insert sequence
          Length = 2106

 Score =  101 bits (51), Expect = 2e-18
 Identities = 156/191 (81%)
 Strand = Plus / Minus

                                                                        
Query: 298  tccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttccccc 357
            |||||||| ||||| ||| |  || ||||||||||| || || ||||||||||  |||||
Sbjct: 1787 tccatggatgctccgctccactggcgaaccaggcacgaaaggaacgaagcctcggccccc 1728

                                                                        
Query: 358  aaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagt 417
             ||||| |||||||||||  ||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1727 gaacatcgggcgcatgaatctatcatcaaacttgcgccacacgcgatgaacggagcgagt 1668

                                                                        
Query: 418  tggcattgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagtc 477
              | || |||||||||  ||| |||||  | || ||||   ||||||| |||||||||||
Sbjct: 1667 ctgaatggtgagaagaagctgaaggttgttctgaggggagggctggcctacatcgaagtc 1608

                       
Query: 478  cgaccccaaca 488
             ||||||||||
Sbjct: 1607 agaccccaaca 1597

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>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22,
              complete sequence
          Length = 173903

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 153/188 (81%)
 Strand = Plus / Plus

                                                                          
Query: 298    tccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttccccc 357
              |||||||| ||||| ||| |  || ||||||||||| || || ||||||||||  |||||
Sbjct: 163834 tccatggatgctccgctccactggcgaaccaggcacgaaaggaacgaagcctcggccccc 163893

                                                                          
Query: 358    aaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagt 417
               ||||| |||||||||||  ||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 163894 gaacatcgggcgcatgaatctatcatcaaacttgcgccacacgcgatgaacggagcgagt 163953

                                                                          
Query: 418    tggcattgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagtc 477
                | || |||||||||  ||| |||||  | || ||||   ||||||| |||||||||||
Sbjct: 163954 ctgaatggtgagaagaagctgaaggttgttctgaggggagggctggcctacatcgaagtc 164013

                      
Query: 478    cgacccca 485
               |||||||
Sbjct: 164014 agacccca 164021

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>gb|AY360145.1| Oryza sativa (japonica cultivar-group) Na+/H+ exchanger (NHX2) mRNA,
            complete cds
          Length = 1726

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 153/188 (81%)
 Strand = Plus / Minus

                                                                        
Query: 298  tccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttccccc 357
            |||||||| ||||| ||| |  || ||||||||||| || || ||||||||||  |||||
Sbjct: 1662 tccatggatgctccgctccactggcgaaccaggcacgaaaggaacgaagcctcggccccc 1603

                                                                        
Query: 358  aaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagt 417
             ||||| |||||||||||  ||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1602 gaacatcgggcgcatgaatctatcatcaaacttgcgccacacgcgatgaacggagcgagt 1543

                                                                        
Query: 418  tggcattgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagtc 477
              | || |||||||||  ||| |||||  | || ||||   ||||||| |||||||||||
Sbjct: 1542 ctgaatggtgagaagaagctgaaggttgttctgaggggagggctggcctacatcgaagtc 1483

                    
Query: 478  cgacccca 485
             |||||||
Sbjct: 1482 agacccca 1475

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 153/188 (81%)
 Strand = Plus / Plus

                                                                           
Query: 298     tccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttccccc 357
               |||||||| ||||| ||| |  || ||||||||||| || || ||||||||||  |||||
Sbjct: 2717314 tccatggatgctccgctccactggcgaaccaggcacgaaaggaacgaagcctcggccccc 2717373

                                                                           
Query: 358     aaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagt 417
                ||||| |||||||||||  ||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 2717374 gaacatcgggcgcatgaatctatcatcaaacttgcgccacacgcgatgaacggagcgagt 2717433

                                                                           
Query: 418     tggcattgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagtc 477
                 | || |||||||||  ||| |||||  | || ||||   ||||||| |||||||||||
Sbjct: 2717434 ctgaatggtgagaagaagctgaaggttgttctgaggggagggctggcctacatcgaagtc 2717493

                       
Query: 478     cgacccca 485
                |||||||
Sbjct: 2717494 agacccca 2717501

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>dbj|AK104336.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-C09, full
            insert sequence
          Length = 2104

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 153/188 (81%)
 Strand = Plus / Minus

                                                                        
Query: 298  tccatggacgctcctctctatgggtgaaccaggcacaaatgggacgaagcctcttccccc 357
            |||||||| ||||| ||| |  || ||||||||||| || || ||||||||||  |||||
Sbjct: 1783 tccatggatgctccgctccactggcgaaccaggcacgaaaggaacgaagcctcggccccc 1724

                                                                        
Query: 358  aaacattgggcgcatgaacttatcatcgaacttgcgccatacacgatgaaccgagcgagt 417
             ||||| |||||||||||  ||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1723 gaacatcgggcgcatgaatctatcatcaaacttgcgccacacgcgatgaacggagcgagt 1664

                                                                        
Query: 418  tggcattgtgagaagatactggaggtttgtttggggggtcagctggccaacatcgaagtc 477
              | || |||||||||  ||| |||||  | || ||||   ||||||| |||||||||||
Sbjct: 1663 ctgaatggtgagaagaagctgaaggttgttctgaggggagggctggcctacatcgaagtc 1604

                    
Query: 478  cgacccca 485
             |||||||
Sbjct: 1603 agacccca 1596

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>gb|AY105332.1| Zea mays PCO131050 mRNA sequence
          Length = 2080

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 323  gaaccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaacttatca 382
            |||||||||||||| |||||||| ||||  ||||| ||||  ||||||||||||  ||| 
Sbjct: 1764 gaaccaggcacaaaggggacgaaacctcgccccccgaacaccgggcgcatgaaccgatcg 1705

                                                   
Query: 383  tcgaacttgcgccatacacgatgaaccgagcgagttggc 421
            || ||||||||||| |  ||||| || ||||||| ||||
Sbjct: 1704 tcaaacttgcgccaaaggcgatggacggagcgagctggc 1666

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>gb|AY270037.1| Zea mays Na+/H+ antiporter NHX2 mRNA, complete cds
          Length = 1623

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 320  ggtgaaccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaactta 379
            ||||||||||| || || || |||||||| || || |||||||||||||||||||| || 
Sbjct: 1586 ggtgaaccagggacgaagggtacgaagcccctgccgccaaacattgggcgcatgaatttg 1527

                 
Query: 380  tcatc 384
            |||||
Sbjct: 1526 tcatc 1522

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>gb|AY730277.1| Iris lactea Na+/H+ antiporter mRNA, complete cds
          Length = 2109

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 320  ggtgaaccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaactta 379
            |||||||| || ||||| || || |||||||  || ||||||||||| ||||||||   |
Sbjct: 1740 ggtgaaccgggaacaaaaggaacaaagcctcgccctccaaacattggacgcatgaaagca 1681

                             
Query: 380  tcatcgaacttgcgcca 396
            ||||| |||||||||||
Sbjct: 1680 tcatcaaacttgcgcca 1664

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>gb|DQ372061.1| Hordeum vulgare Na+/H+ antiporter (NHX3) mRNA, complete cds
          Length = 1794

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 332  acaaatgggacgaagcctcttcccccaaacattgggcgcatgaa 375
            |||||||||||||||||||  || |||||||| || ||||||||
Sbjct: 1577 acaaatgggacgaagcctcgacctccaaacatcggccgcatgaa 1534

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>gb|AY109416.1| Zea mays CL694_1 mRNA sequence
          Length = 3272

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                        
Query: 318  tgggtgaaccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaact 377
            ||||||||||||| || || || |||||||| |  || |||||||  || ||||||||  
Sbjct: 1638 tgggtgaaccagggacgaagggaacgaagccacggccaccaaacaccggccgcatgaaac 1579

                               
Query: 378  tatcatcgaacttgcgcca 396
            | |||||||||||||||||
Sbjct: 1578 tgtcatcgaacttgcgcca 1560

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>gb|AY461512.1| Triticum aestivum Na+/H+ antiporter precursor mRNA, complete cds
          Length = 1966

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 326  ccaggcacaaatgggacgaagcctc 350
            ||||| |||||||||||||||||||
Sbjct: 1781 ccagggacaaatgggacgaagcctc 1757

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>ref|NM_187872.1| Oryza sativa (japonica cultivar-group), Ozsa8316 predicted mRNA
          Length = 2463

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 420 gcattgtgagaagatactggaggtt 444
           |||||||||| ||||||||||||||
Sbjct: 743 gcattgtgaggagatactggaggtt 719

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>gb|AC099629.6| Mus musculus chromosome 15, clone RP24-86K17, complete sequence
          Length = 175809

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 175   caaaagaactcccaagagcaaaattgagt 203
             ||||||||||||||||| |||||| ||||
Sbjct: 46141 caaaagaactcccaagaacaaaatggagt 46113

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>gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosome 1, complete sequence
          Length = 167927

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 117   tacatggttctacagaaacta 137
             |||||||||||||||||||||
Sbjct: 33335 tacatggttctacagaaacta 33355

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>gb|BC053784.1| Xenopus laevis fructose-1,6-bisphosphatase, mRNA (cDNA clone
            MGC:64343 IMAGE:6877367), complete cds
          Length = 1171

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 205  atatctgaacatttacaagaaatat 229
            |||| ||||||||||||||||||||
Sbjct: 1049 atatatgaacatttacaagaaatat 1073

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>dbj|AK061932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C12, full
           insert sequence
          Length = 2187

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 420 gcattgtgagaagatactggaggtt 444
           |||||||||| ||||||||||||||
Sbjct: 269 gcattgtgaggagatactggaggtt 245

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>gb|AC025538.6| Homo sapiens BAC clone RP11-274J2 from 4, complete sequence
          Length = 161478

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   accaaaagaactcccaagagc 193
             |||||||||||||||||||||
Sbjct: 22385 accaaaagaactcccaagagc 22405

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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 220    caagaaatatacttgcaccttctga 244
              |||||||||||||||||| ||||||
Sbjct: 792999 caagaaatatacttgcacattctga 793023

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>dbj|AK067133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094I21, full
           insert sequence
          Length = 2729

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 420 gcattgtgagaagatactggaggtt 444
           |||||||||| ||||||||||||||
Sbjct: 724 gcattgtgaggagatactggaggtt 700

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>gb|AY270040.1| Zea mays Na+/H+ antiporter NHX5 mRNA, complete cds
          Length = 1638

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 326  ccaggcacaaatgggacgaagcctcttcccccaaacattgggcgcatgaacttatcatcg 385
            |||||||| | |||||||||||| |  || || ||||| ||||||||||||   ||||||
Sbjct: 1577 ccaggcacgactgggacgaagccgcggcctccgaacatcgggcgcatgaacgcgtcatcg 1518

                 
Query: 386  aactt 390
            |||||
Sbjct: 1517 aactt 1513

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>gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, complete sequence
          Length = 217902

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 117   tacatggttctacagaaacta 137
             |||||||||||||||||||||
Sbjct: 65588 tacatggttctacagaaacta 65568

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>gb|AC104882.30| Mus musculus chromosome 8, clone RP23-401L9, complete sequence
          Length = 209525

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    ttgttctgtctgaacaacaa 60
             ||||||||||||||||||||
Sbjct: 58409 ttgttctgtctgaacaacaa 58428

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>emb|AL139378.15| Human DNA sequence from clone RP11-271B5 on chromosome 13 Contains the
             FGF9 gene for fibroblast growth factor 9 (glia-activating
             factor (GAF, HBFG-9)), a ribosomal protein S7 (40S
             ribosomal protein S7) (RPS7) pseudogene and two CpG
             islands, complete sequence
          Length = 166703

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    agatgaaattgtacatcttg 90
             ||||||||||||||||||||
Sbjct: 90647 agatgaaattgtacatcttg 90666

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>emb|AL031258.12|HS335H7 Human DNA sequence from clone LA16c-335H7 on chromosome 16 Contains the
             MSLN (mesothelin) gene, GSSs and CpG islands, complete
             sequence
          Length = 37307

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 281   gtgcccaacaagccaggtccatgg 304
             |||||||||||||||| |||||||
Sbjct: 36594 gtgcccaacaagccagctccatgg 36617

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>gb|AE006464.1| Homo sapiens 16p13.3 sequence section 3 of 8
          Length = 256073

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    gtgcccaacaagccaggtccatgg 304
              |||||||||||||||| |||||||
Sbjct: 255892 gtgcccaacaagccagctccatgg 255915

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>gb|AC010562.5| Drosophila melanogaster 3L BAC RP98-21K18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 181528

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   agctggccaacatcgaagtc 477
             ||||||||||||||||||||
Sbjct: 70430 agctggccaacatcgaagtc 70449

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>gb|AC102341.10| Mus musculus chromosome 8, clone RP23-214E1, complete sequence
          Length = 187701

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    caaaagaactcccaagagca 194
              ||||||||||||||||||||
Sbjct: 143568 caaaagaactcccaagagca 143587

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>gb|AY184476.1| Hordeum brevisubulatum Na+/H+ antiporter (NHX1) mRNA, complete cds
          Length = 1916

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 332  acaaatgggacgaagcctcttcccccaaacattgggcgcatgaa 375
            |||||||||||||||||||  || |||||||  || ||||||||
Sbjct: 1647 acaaatgggacgaagcctcgacctccaaacaccggccgcatgaa 1604

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 421     cattgtgagaagatactggaggtt 444
               ||||||||| ||||||||||||||
Sbjct: 8371784 cattgtgaggagatactggaggtt 8371807

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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   ccgaccccaacaagctcgcc 496
             ||||||||||||||||||||
Sbjct: 40870 ccgaccccaacaagctcgcc 40889

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>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0503G09
          Length = 59843

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 421   cattgtgagaagatactggaggtt 444
             ||||||||| ||||||||||||||
Sbjct: 36410 cattgtgaggagatactggaggtt 36433

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>gb|AE003560.3| Drosophila melanogaster chromosome 3L, section 25 of 83 of the complete
              sequence
          Length = 285494

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    agctggccaacatcgaagtc 477
              ||||||||||||||||||||
Sbjct: 158299 agctggccaacatcgaagtc 158280

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>gb|AY270041.1| Zea mays Na+/H+ antiporter NHX6 mRNA, complete cds
          Length = 1626

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 341  acgaagcctcttcccccaaacattgggcgcat 372
            ||||||||||| ||||| ||||| ||||||||
Sbjct: 1568 acgaagcctctccccccgaacatcgggcgcat 1537

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>gb|AC127682.4| Mus musculus BAC clone RP24-170O17 from 8, complete sequence
          Length = 144298

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  caaaagaactcccaagagca 194
            ||||||||||||||||||||
Sbjct: 9929 caaaagaactcccaagagca 9910

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>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence
          Length = 208855

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   caaaagaactcccaagagca 194
             ||||||||||||||||||||
Sbjct: 83441 caaaagaactcccaagagca 83460

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>gb|DQ285410.1| Hordeum brevisubulatum vacuolar Na+/H+ antiporter mRNA, complete cds
          Length = 1632

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 332  acaaatgggacgaagcctcttcccccaaacattgggcgcatgaa 375
            |||||||||||||||||||  || |||||||  || ||||||||
Sbjct: 1565 acaaatgggacgaagcctcgacctccaaacaccggccgcatgaa 1522

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>emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chromosome X, complete
             sequence
          Length = 142846

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   ataatatacaccaacacata 162
             ||||||||||||||||||||
Sbjct: 56367 ataatatacaccaacacata 56348

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>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 171887

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    tgtttggggggtcagctggc 464
              ||||||||||||||||||||
Sbjct: 109453 tgtttggggggtcagctggc 109434


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,784,971
Number of Sequences: 3902068
Number of extensions: 4784971
Number of successful extensions: 89419
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89280
Number of HSP's gapped (non-prelim): 125
length of query: 497
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 475
effective length of database: 17,147,199,772
effective search space: 8144919891700
effective search space used: 8144919891700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result