Clone Information

BLAST Search Result

Clone Name	rbasdh04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ECR1_PYRAE (Q8ZVM8) Probable exosome complex RNA-binding protein 1	36	0.094
2	PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	36	0.12
3	PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	36	0.12
4	PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	36	0.12
5	FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-...	35	0.16
6	PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR...	35	0.21
7	PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put...	35	0.21
8	FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUS...	35	0.27
9	PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)	34	0.47
10	PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)	34	0.47
11	RRP6_YEAST (Q12149) Exosome complex exonuclease RRP6 (EC 3.1.13....	34	0.47
12	EXOSX_HUMAN (Q01780) Exosome component 10 (Polymyositis/sclerode...	33	0.80
13	EXOSX_MOUSE (P56960) Exosome component 10 (Polymyositis/sclerode...	32	1.4
14	ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1	32	1.4
15	ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2	32	1.4
16	HFA1_YEAST (P32874) Protein HFA1	32	1.8
17	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	32	1.8
18	ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1	32	2.3
19	VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding p...	32	2.3
20	AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial pr...	32	2.3
21	ECR1_ARCFU (O29758) Probable exosome complex RNA-binding protein 1	31	3.0
22	AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial prec...	31	3.0
23	PBP2_YEAST (P38151) PAB1-binding protein 2	31	3.0
24	VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding p...	31	4.0
25	PHOL_MYCTU (P0A5S0) PhoH-like protein	30	5.2
26	PHOL_MYCBO (P0A5S1) PhoH-like protein	30	5.2
27	PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiestera...	30	5.2
28	FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUS...	30	5.2
29	PDE3B_MOUSE (Q61409) cGMP-inhibited 3',5'-cyclic phosphodiestera...	30	5.2
30	FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUS...	30	5.2
31	Y1756_CLOAB (Q97I96) UPF0109 protein CAC1756	30	5.2
32	Y1711_CLOPE (Q8XJP5) UPF0109 protein CPE1711	30	6.7
33	TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein	30	6.7
34	LAP4_HUMAN (Q14160) LAP4 protein (Scribble homolog protein) (hSc...	30	6.7
35	TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein	30	6.7
36	BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-assoc...	30	8.8
37	NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-...	30	8.8
38	SCNAA_CHICK (Q92075) Amiloride-sensitive sodium channel alpha-su...	30	8.8
39	SPHS_SYNP7 (P39664) Sensor protein sphS (EC 2.7.13.3)	30	8.8
40	PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)	30	8.8
41	PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)	30	8.8
42	NU2M_RAT (P11662) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6...	30	8.8
43	GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (G...	30	8.8

>ECR1_PYRAE (Q8ZVM8) Probable exosome complex RNA-binding protein 1|
          Length = 235

 Score = 36.2 bits (82), Expect = 0.094
 Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
 Frame = -3

Query: 394 DWPPLPTVPDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKE-SCNVEIHIG 218
           ++P + T+ D+     +V +V+  +++++ P K+ RVIG++GS +  + E  C++ +   
Sbjct: 129 EYPIILTLKDE-----KVGKVESGTVVEITPVKVPRVIGKRGSMLNTLMELGCDIVVGQN 183

Query: 217 G-----AKGPPDRVFIIGPVKEVRKAEAILRG 137
           G      K P D VF+   ++++ +AE+ + G
Sbjct: 184 GRIWVKCKDPRDEVFLASLIRKI-EAESHVMG 214

to top

>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 298 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 125
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81

to top

>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 298 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 125
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81

to top

>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 298 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 125
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81

to top

>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -3

Query: 415 INDNQQADWPPLPTVPDDIEAEVRV----PEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 248
           + D  Q D   L +  D I +++      P   +     VP G +G +IGR G  I  ++
Sbjct: 113 LEDGDQPDSKKLASQGDSIGSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQ 172

Query: 247 E--SCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 143
           +   C V+I       P   V + G  + V+KA+ +L
Sbjct: 173 QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML 209

to top

>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 298 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 125
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81



 Score = 30.0 bits (66), Expect = 6.7
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 316 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 143
           L +P   +G +IGR+G+ I  +++    +I I    +G  DR V I G    +  A+ ++
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351

Query: 142 RGRM 131
             R+
Sbjct: 352 NVRL 355

to top

>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 298 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 125
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81



 Score = 30.0 bits (66), Expect = 6.7
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 316 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 143
           L +P   +G +IGR+G+ I  +++    +I I    +G  DR V I G    +  A+ ++
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348

Query: 142 RGRM 131
             R+
Sbjct: 349 NVRL 352

to top

>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (p75)
          Length = 707

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -3

Query: 415 INDNQQADWPPLPTVPDDIEAEVRV----PEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 248
           + D  Q +   L +  D I +++      P   +     VP G +G +IGR G  I  ++
Sbjct: 112 LEDGDQPESKKLASQGDSISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQ 171

Query: 247 E--SCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 143
           +   C V+I       P   V + G  + V+KA+ +L
Sbjct: 172 QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML 208

to top

>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 298 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 143
           ++G +IG+KG ++  ++E     I+I     P   V I GP   + KA A++
Sbjct: 24  EVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75



 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 316 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGA-KGPPDR-VFIIGPVKEVRKAEAIL 143
           L +P   +G +IGR+G+ I  +++    +I I  A +G  +R + I G    +  A+ ++
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325

Query: 142 RGRM 131
             R+
Sbjct: 326 NARL 329

to top

>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 298 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 143
           ++G +IG+KG ++  ++E     I+I     P   V I GP   + KA A++
Sbjct: 24  EVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75



 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 316 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGA-KGPPDR-VFIIGPVKEVRKAEAIL 143
           L +P   +G +IGR+G+ I  +++    +I I  A +G  +R + I G    +  A+ ++
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325

Query: 142 RGRM 131
             R+
Sbjct: 326 NARL 329

to top

>RRP6_YEAST (Q12149) Exosome complex exonuclease RRP6 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 6)
          Length = 733

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 571 WKNRPLSEMMIRAATDDVRFLLNIHEKMMEKL 476
           W+ RPLS+ M   A  D  FLLNI++++  KL
Sbjct: 349 WRIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380

to top

>EXOSX_HUMAN (Q01780) Exosome component 10 (Polymyositis/scleroderma autoantigen|
           2) (Autoantigen PM/Scl 2) (Polymyositis/scleroderma
           autoantigen 100 kDa) (PM/Scl-100) (P100
           polymyositis-scleroderma overlap syndrome-associated
           autoantigen)
          Length = 885

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 571 WKNRPLSEMMIRAATDDVRFLLNIHEKM 488
           W+ RPL E M+  A DD  +LL I++KM
Sbjct: 424 WRIRPLPEEMLSYARDDTHYLLYIYDKM 451

to top

>EXOSX_MOUSE (P56960) Exosome component 10 (Polymyositis/scleroderma autoantigen|
           2 homolog) (Autoantigen PM/Scl 2 homolog)
          Length = 887

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 571 WKNRPLSEMMIRAATDDVRFLLNIHEKMMEKL 476
           W+ RPL E M+  A DD  +LL I+++M  +L
Sbjct: 424 WRIRPLPEEMLSYARDDTHYLLYIYDRMRLEL 455

to top

>ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1|
          Length = 311

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -3

Query: 319 LLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIG-----GAKGPPD 197
           L+ + P K+ R+IG++GS I  VKE  + +I +G       KG PD
Sbjct: 143 LVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGVVWIKGEPD 188

to top

>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 310 VPPGKMGRVIGRKGSSIMAVKE--SCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 143
           VP G +G +IGR G  I  +++   C V+I       P   V + G  + V+KA+ +L
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLML 272

to top

>HFA1_YEAST (P32874) Protein HFA1|
          Length = 2273

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
 Frame = -3

Query: 619  PEKEEVRTLLRQDPNFWKNRPLSEMMIRAATDDVRFLLNIHEKMME-KLSKVSSWRLAVR 443
            P K+ ++T    D  F  NR L  +   A + + +F+L+I++   E  + K+SS  L + 
Sbjct: 679  PPKDFLKTKFPVDFIFDNNRYLFNV---AQSSEEQFILSINKSQCEVNVQKLSSDCLLIS 735

Query: 442  SELYCRCFCINDNQQADWPPLPTVPDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSS 263
             +  C      D+ +     + +    +EAE+   +V     +   PGK+ + + R G  
Sbjct: 736  VDGKCHTVYWKDDIRGTRLSIDSNTIFLEAELNPTQV-----ISPTPGKLVKYLVRSGDH 790

Query: 262  IMAVKESCNVEI 227
            + A ++   +EI
Sbjct: 791  VFAGQQYAEIEI 802

to top

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +3

Query: 144  RIASAFLTSFTGPMMNTLSGGPFAPPIWISTLQDSFTAIIDDPFLPITRPIFPGGTSKSE 323
            ++ +   T FT    ++  G    PP+WIST     T         +T    P GT+ + 
Sbjct: 4533 KVPTTTTTGFTATPSSS-PGTALTPPVWISTTTTPTTTTPTTSGSTVTPSSIP-GTTHTA 4590

Query: 324  RISTSGTRTSASMSSGTVGRGGQSA 398
            R+ T+ T T A+ S  T     Q++
Sbjct: 4591 RVLTTTTTTVATGSMATPSSSTQTS 4615

to top

>ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1|
          Length = 239

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 358 EAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIG 218
           +A  R+  +    ++++ P K+ RVIGRKGS I  +K     +I +G
Sbjct: 142 DAPTRLGRLQGGQVVEIDPVKVPRVIGRKGSMIKMLKRVLGCDIVVG 188

to top

>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)|
            (HDL-binding protein)
          Length = 1268

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 316  LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRG 137
            ++VP      +IG+KGS I  + +   V IH+   +   D + I G    + +A+A L  
Sbjct: 977  VEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSDTIAITGLAANLDRAKAGLLD 1036

Query: 136  RMLE 125
            R+ E
Sbjct: 1037 RVKE 1040

to top

>AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1)
           (Dual-specificity A-kinase-anchoring protein 1)
           (D-AKAP-1) (Spermatid A-kinase anchor protein) (S-AKAP)
          Length = 857

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -3

Query: 379 PTVPDDIEAEVRVPEVDILSL-LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHI 221
           P  P  ++A     +VD++   ++VP   +GR+IG++G  +  +K++   +I+I
Sbjct: 544 PDSPQSVQAGSNPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYI 597

to top

>ECR1_ARCFU (O29758) Probable exosome complex RNA-binding protein 1|
          Length = 223

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 319 LLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIG 218
           ++ + P ++ RVIG+KGS I  +K   +V+I +G
Sbjct: 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG 172

to top

>AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase
           anchor protein 121 kDa) (AKAP 121) (Dual specificity
           A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid
           A-kinase anchor protei
          Length = 854

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -3

Query: 379 PTVPDDIEAEVRVPEVDILSL-LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHI 221
           P  P  ++A     +VD++   ++VP   +GR+IG++G  +  +K++   +I+I
Sbjct: 541 PDSPQTVQAGSNPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYI 594

to top

>PBP2_YEAST (P38151) PAB1-binding protein 2|
          Length = 413

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -3

Query: 286 VIGRKGSSIMAVKESCNVEIHI-GGAKGPPDR-VFIIGPVKEVRKAEAILRGRMLE 125
           ++G KG++I  +K   +  I+I    +G P+R V++ G   +V KA  ++   +LE
Sbjct: 81  IVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDVAKAYGMIVRALLE 136

to top

>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)|
            (HDL-binding protein)
          Length = 1268

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -3

Query: 316  LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRG 137
            ++VP      VIG+KGS I  + +   V IH+   +   D + I G    + +A+A L  
Sbjct: 977  VEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLE 1036

Query: 136  RMLE 125
            R+ E
Sbjct: 1037 RVKE 1040

to top

>PHOL_MYCTU (P0A5S0) PhoH-like protein|
          Length = 352

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 16/71 (22%), Positives = 36/71 (50%)
 Frame = -3

Query: 355 AEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGP 176
           A  R  +  + S +DVPP  +  ++G    ++ A++ + + ++H+ G     + V + G 
Sbjct: 12  AGARQADAQVRSSIDVPPDLVVGLLGSADENLRALERTLSADLHVRG-----NAVTLCGE 66

Query: 175 VKEVRKAEAIL 143
             +V  AE ++
Sbjct: 67  PADVALAERVI 77

to top

>PHOL_MYCBO (P0A5S1) PhoH-like protein|
          Length = 352

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 16/71 (22%), Positives = 36/71 (50%)
 Frame = -3

Query: 355 AEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGP 176
           A  R  +  + S +DVPP  +  ++G    ++ A++ + + ++H+ G     + V + G 
Sbjct: 12  AGARQADAQVRSSIDVPPDLVVGLLGSADENLRALERTLSADLHVRG-----NAVTLCGE 66

Query: 175 VKEVRKAEAIL 143
             +V  AE ++
Sbjct: 67  PADVALAERVI 77

to top

>PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
            3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
            (CGI-PDE B) (CGIPDE1) (CGIP1)
          Length = 1112

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 114  FL*NSSIRPLRIASAFLTSFTGPMMNTLSGGPFAPPIWISTLQDSFTAIIDD 269
            F+  SS +  ++  +F+T   GP+ N+       P  W+   +D+ T   DD
Sbjct: 976  FMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDD 1027

to top

>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 310 VPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKG--PPDRVFIIGPVKEVRKAEAIL 143
           VP G +G +IGR G  I  +++    +I I    G  P     + G  + V+ A+ +L
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL 163

to top

>PDE3B_MOUSE (Q61409) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
           (CGI-PDE B) (CGIPDE1) (Fragment)
          Length = 799

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 114 FL*NSSIRPLRIASAFLTSFTGPMMNTLSGGPFAPPIWISTLQDSFTAIIDD 269
           F+  SS +  ++  +F+T   GP+ N+       P  WI T +   T   DD
Sbjct: 666 FMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWIETEEGDDTESDDD 717

to top

>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP)
          Length = 651

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 310 VPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKG--PPDRVFIIGPVKEVRKAEAIL 143
           VP G +G +IGR G  I  +++    +I I    G  P     + G  + V+ A+ +L
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL 160

to top

>Y1756_CLOAB (Q97I96) UPF0109 protein CAC1756|
          Length = 75

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 370 PDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 248
           PD+++      E  I+  L V P  MG+VIG++G    A++
Sbjct: 16  PDEVQVSEVTGEQSIILELKVAPEDMGKVIGKQGRIAKAIR 56

to top

>Y1711_CLOPE (Q8XJP5) UPF0109 protein CPE1711|
          Length = 75

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 370 PDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 248
           P+D+     + E  I+  L V P  MG+VIG++G    A++
Sbjct: 16  PEDVHVNEVLGEESIILELKVSPEDMGKVIGKQGRIAKAIR 56

to top

>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein|
          Length = 606

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 367 DDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVF 188
           DDIE E+RVP+  +             +IGR+G++I  +++     I +       +RV 
Sbjct: 51  DDIEIEMRVPQEAVKL-----------IIGRQGANIKQLRKQTGARIDVDTEDVGDERVL 99

Query: 187 II-GPVKEVRKAEAILRGRMLE 125
           +I G   +V KA+A +   + E
Sbjct: 100 LISGFPVQVCKAKAAIHQILTE 121

to top

>LAP4_HUMAN (Q14160) LAP4 protein (Scribble homolog protein) (hScrib)|
          Length = 1630

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
 Frame = -3

Query: 418  CINDNQQADWPPLPTVPDDIEAEVR--------VPEVDILSLLDVPPGKMGRVIGRKGSS 263
            C    QQ   PP P  PD++ A V+        VP           P   G     +  S
Sbjct: 1297 CSPSGQQ---PPSPPSPDELPANVKQAYRAFAAVPTSHPPEDAPAQPPTPGPAASPEQLS 1353

Query: 262  IMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAE 152
                ++   +E+ +  A+GPP RV ++G   ++RK +
Sbjct: 1354 FRERQKYFELEVRVPQAEGPPKRVSLVG-ADDLRKMQ 1389

to top

>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein|
          Length = 560

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 367 DDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVF 188
           DDIE E+RVP+  +             +IGR+G++I  +++     I +       +RV 
Sbjct: 51  DDIEIEMRVPQEAVKL-----------IIGRQGANIKQLRKQTGARIDVDTEDVGDERVL 99

Query: 187 II-GPVKEVRKAEAILRGRMLE 125
           +I G   +V KA+A +   + E
Sbjct: 100 LISGFPVQVCKAKAAIHQILTE 121

to top

>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3) (Protein G3)
          Length = 1132

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
 Frame = +3

Query: 204 GPFAPPIWISTLQDSFTA--------IIDDPFLPITRPIFPGGTSKSERISTSGTRTSAS 359
           GP  PP    TL              +I  P  P  RP  PGG   S  +  +G  T+AS
Sbjct: 477 GPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGTLQGAGLGTNAS 536

Query: 360 MSSGTVGRGGQ 392
           ++    G  GQ
Sbjct: 537 LAQMVSGLVGQ 547

to top

>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = +3

Query: 216  PPIWISTLQDSFTAIIDDPFLPITRPIF-PGGTSKSERISTSGTRTSASMSSGTVGRGGQ 392
            PP+         T++ D   LP+TRP   P     S + S + +   + ++ G++ +G  
Sbjct: 1062 PPVLQPAPHQVITSLSDSARLPVTRPTRPPPPLIPSSKTSATSSDKPSFITGGSISQGTP 1121

Query: 393  SACWLSFMQKHLQYS--------SLRTARRHEDT 470
                 S  Q + Q +        SL   R+HE T
Sbjct: 1122 GTYLASLSQPYSQETLKPSVGSISLGLPRQHEST 1155

to top

>SCNAA_CHICK (Q92075) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 637

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 436 LYCRCFCINDNQQADW-PPLPTVPDDIEAEVRVPEVDILSLLDVPPG 299
           LY  C+  NDN  + W   LP + + +   VR  + D + LL    G
Sbjct: 288 LYGNCYTFNDNSSSLWTSSLPGINNGLSLVVRTEQNDFIPLLSTVTG 334

to top

>SPHS_SYNP7 (P39664) Sensor protein sphS (EC 2.7.13.3)|
          Length = 413

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
 Frame = -3

Query: 619 PEKEEVRTLLRQDPNFWKNRPLSEMMIRA------ATDDVRFLLNI--HEKMMEKLSKVS 464
           P+ E++ T LR      ++ P+S +++ A      A    R LL +   +     L  V 
Sbjct: 40  PQLEQITTDLRDRDRLLEDLPVSFLLLDADNLVLEANRSARVLLALPPEDYCRPLLEVVR 99

Query: 463 SWRLAVRSELYCRCFCINDNQQADWPPLPTVPDDIEAEVRVPEVDILSLLDVPPGKMGRV 284
           S+ L     L  RC   N  Q   W   P  PD ++   + P       + +  G++G +
Sbjct: 100 SYEL---DRLVARCRAANAPQTDRWTLTPVNPDPLQVVPQTPRPVQGQAIPLSNGQIGVL 156

Query: 283 I 281
           I
Sbjct: 157 I 157

to top

>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -3

Query: 310 VPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 143
           VP   +G VIGR+GS I  +++     I IG  A+G  +R V I G    +  A+ ++
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305

to top

>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -3

Query: 310 VPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 143
           VP   +G VIGR+GS I  +++     I IG  A+G  +R V I G    +  A+ ++
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305

to top

>NU2M_RAT (P11662) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 345

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 132 IRPLRIASAFLTSFTGPMMNTLSGGPFAPPIWISTLQDSFTAII 263
           + P+ +   +LT+F G ++ TLS     PP+W+  L+ S  AII
Sbjct: 1   MNPITLTIIYLTTFKGRLITTLSTN--LPPMWVG-LEMSLLAII 41

to top

>GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (GRIP2 protein)|
          Length = 1043

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 192 TLSGGPFAPPIWISTLQDSFTAIIDDPFLPITRPIFPGGTSKSERISTSGTRTSASMSSG 371
           +LS  PF+ P    TL  +F+          ++P+ P  T    R      ++S S++S 
Sbjct: 386 SLSSTPFSSP----TLNHAFSCNNPSTLPRGSQPMSPRTTMGRRRQRRREHKSSLSLASS 441

Query: 372 TVGRGGQ 392
           TVG GGQ
Sbjct: 442 TVGPGGQ 448


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,043,772
Number of Sequences: 219361
Number of extensions: 2245950
Number of successful extensions: 6954
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 6559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6946
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result