Clone Information

BLAST Search Result

Clone Name	rbasdh04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK100223.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	638	e-180
2	ref\|NM_193577.1\| Oryza sativa (japonica cultivar-group), predic...	636	e-179
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	274	4e-70
4	dbj\|AP003141.3\| Oryza sativa (japonica cultivar-group) genomic D...	274	4e-70
5	gb\|BT017548.1\| Zea mays clone EL01N0423H02.c mRNA sequence	180	4e-42
6	ref\|XM_741410.1\| Aspergillus fumigatus Af293 hypothetical protei...	46	0.15
7	gb\|AC008008.2\| Homo sapiens Xp22 PAC RPCI6-102 (Roswell Park Can...	44	0.59
8	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.59
9	dbj\|AP003763.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.59
10	dbj\|AK059857.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.59
11	dbj\|AP002782.3\| Homo sapiens genomic DNA, chromosome 11q clone:R...	44	0.59
12	gb\|BT013287.1\| Lycopersicon esculentum clone 134897R, mRNA sequence	42	2.3
13	emb\|AL109659.20\|HSJ1024N4 Human DNA sequence from clone RP5-1024...	42	2.3
14	gb\|AC023050.36\| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Can...	42	2.3
15	gb\|AC126177.8\| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Can...	42	2.3
16	gb\|DQ284465.1\| Solanum tuberosum clone 096G02 3'-5' exonuclease ...	42	2.3
17	ref\|XM_632648.1\| Dictyostelium discoideum myosin II heavy chain ...	40	9.3
18	gb\|CP000096.1\| Pelodictyon luteolum DSM 273, complete genome	40	9.3
19	gb\|AC121095.16\| Mus musculus chromosome 14, clone RP24-324H17, c...	40	9.3
20	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	9.3
21	gb\|AC161587.2\| Mus musculus BAC clone RP24-492G17 from chromosom...	40	9.3
22	gb\|AC136699.23\| Mus musculus chromosome 9, clone RP23-18E24, com...	40	9.3
23	ref\|XM_446615.1\| Candida glabrata CBS138, CAGL0G05830g partial mRNA	40	9.3
24	emb\|BX005268.26\| Zebrafish DNA sequence from clone DKEY-11L22 in...	40	9.3
25	emb\|BX510909.19\| Zebrafish DNA sequence from clone DKEY-195E19 i...	40	9.3
26	gb\|AC072054.10\| Homo sapiens BAC clone RP11-33P21 from 7, comple...	40	9.3
27	emb\|CR383684.7\| Zebrafish DNA sequence from clone DKEYP-69E1 in ...	40	9.3
28	emb\|AL596179.3\| Human DNA sequence from clone RP11-49A12 on chro...	40	9.3
29	emb\|AL512510.13\| Human DNA sequence from clone RP11-537P24 on ch...	40	9.3
30	emb\|AL096863.13\|HS1119I23 Human DNA sequence from clone RP5-1119...	40	9.3
31	emb\|CR380953.1\| Candida glabrata strain CBS138 chromosome G comp...	40	9.3
32	gb\|AC154487.2\| Mus musculus BAC clone RP24-119I4 from chromosome...	40	9.3
33	emb\|AL161982.1\|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761...	40	9.3
34	emb\|CR388146.9\| Zebrafish DNA sequence from clone DKEY-205F14 in...	40	9.3
35	emb\|CR293500.7\| Zebrafish DNA sequence from clone DKEY-211I20 in...	40	9.3
36	emb\|BX511020.10\| Zebrafish DNA sequence from clone RP71-9C18, co...	40	9.3
37	ref\|XM_698012.1\| PREDICTED: Danio rerio hypothetical protein LOC...	40	9.3
38	emb\|BX813317.11\| Mouse DNA sequence from clone RP24-297H17 on ch...	40	9.3
39	emb\|AL807749.21\| Zebrafish DNA sequence from clone CH211-197F20,...	40	9.3
40	emb\|BX324003.7\| Zebrafish DNA sequence from clone DKEY-81I14 in ...	40	9.3
41	emb\|BX276122.23\| Zebrafish DNA sequence from clone CH211-232H22,...	40	9.3
42	emb\|AL732504.23\| Mouse DNA sequence from clone RP23-177I18 on ch...	40	9.3
43	gb\|AC021889.29\| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Canc...	40	9.3
44	ref\|NM_067199.1\| Caenorhabditis elegans Y75B8A.28 (Y75B8A.28) mR...	40	9.3
45	emb\|BX640584.10\| Zebrafish DNA sequence from clone DKEY-78O7 in ...	40	9.3
46	gb\|AC153774.3\| Loxodonta africana clone VMRC15-554J14, complete ...	40	9.3
47	emb\|BX649616.5\| Zebrafish DNA sequence from clone CH211-165K17 i...	40	9.3
48	emb\|AL928917.9\| Zebrafish DNA sequence from clone CH211-103D12 i...	40	9.3
49	emb\|BX510947.20\| Zebrafish DNA sequence from clone DKEY-226F16 i...	40	9.3
50	emb\|AL033514.1\|CEY75B8A Caenorhabditis elegans YAC Y75B8A, compl...	40	9.3
51	emb\|CR792418.18\| Zebrafish DNA sequence from clone DKEY-59L11 in...	40	9.3
52	emb\|BX649283.16\| Zebrafish DNA sequence from clone DKEYP-86C4 in...	40	9.3
53	gb\|U22443.1\|EFU22443 Ellobius fuscocapillus sex-determining prot...	40	9.3
54	gb\|M14628.1\|DDIMYHC D.discoideum myosin heavy chain gene, comple...	40	9.3

>dbj|AK100223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047H21, full
            insert sequence
          Length = 1245

 Score =  638 bits (322), Expect = e-180
 Identities = 487/542 (89%)
 Strand = Plus / Minus

                                                                        
Query: 117  ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 176
            ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 1082 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 1023

                                                                        
Query: 177  ggtccaatgatgaataccctatctggaggcccctttgcaccaccgatatggatttcaaca 236
            |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 1022 ggtccaatgatgaataccctgtctggaggtccctttgcaccaccaatatggatttcaaca 963

                                                                        
Query: 237  ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 296
            ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 962  ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 903

                                                                        
Query: 297  tttccaggaggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagct 356
            || |||||||||||||| ||||  || ||||||||||| |||||||||   || |||| |
Sbjct: 902  ttgccaggaggcacatccaagactgacaggatatccacctcaggaacataaacatcaggt 843

                                                                        
Query: 357  tcaatgtcatcagggacagttggaagaggtggccaatctgcctgctggttgtcatttatg 416
            ||||| |||||||||||||||||||||||||||||||| || | || |||||||||||||
Sbjct: 842  tcaatttcatcagggacagttggaagaggtggccaatccgcatacttgttgtcatttatg 783

                                                                        
Query: 417  caaaagcacctgcagtatagctcacttcgtactgccagacgccatgaggatactttgctt 476
            |||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||||
Sbjct: 782  caaaagcacctgcagtatagctcactgcgaactgacagacgccataaagatactttgctt 723

                                                                        
Query: 477  aacttctccatcattttctcatgtatattgagaaggaagcgcacatcatctgttgctgct 536
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 722  aacttctccatcattttctcatgtatactgagaaggaagcggacatcatctgtggctgct 663

                                                                        
Query: 537  cgtatcatcatttcagacaagggcctatttttccagaaatttgggtcctgccttagaagg 596
            || |||||||||||||| || |||||||   |||| || || ||||||||||||||||||
Sbjct: 662  cgaatcatcatttcagataaaggcctatgcgtccaaaagttagggtcctgccttagaagg 603

                                                                        
Query: 597  gtacggacttcttccttttcaggatatggcattccacaatagcgaggatcagcaagaagg 656
            |||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||
Sbjct: 602  gtacggacttcttccttttcaggatatgccattccacaatatcggggatcagcaaggagg 543

              
Query: 657  ct 658
            ||
Sbjct: 542  ct 541



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 43   agtaccacatgcatttctgtat 64
            ||||||||||||||||||||||
Sbjct: 1177 agtaccacatgcatttctgtat 1156

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>ref|NM_193577.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1209

 Score =  636 bits (321), Expect = e-179
 Identities = 480/533 (90%)
 Strand = Plus / Minus

                                                                        
Query: 126  tccagcattcggcccctcaggatagcctccgcctttctgacttccttcactggtccaatg 185
            |||||||| ||||| |  ||||||||||| || ||||||||||||| |||||||||||||
Sbjct: 1202 tccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcactggtccaatg 1143

                                                                        
Query: 186  atgaataccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaagat 245
            ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 1142 atgaataccctgtctggaggtccctttgcaccaccaatatggatttcaacattgcaagat 1083

                                                                        
Query: 246  tctttcacggccattattgacgatccttttctgccaataacgcgtcccatttttccagga 305
             |||||||  |||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 1082 gctttcacttccattattgatgatccttttctgccaataacacgccccattttgccagga 1023

                                                                        
Query: 306  ggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagcttcaatgtca 365
            |||||||| ||||  || ||||||||||| |||||||||   || |||| |||||| |||
Sbjct: 1022 ggcacatccaagactgacaggatatccacctcaggaacataaacatcaggttcaatttca 963

                                                                        
Query: 366  tcagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcac 425
            ||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 962  tcagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcac 903

                                                                        
Query: 426  ctgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcc 485
            ||||||||||||||||| || |||| |||||||||| | |||||||||||||||||||||
Sbjct: 902  ctgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcc 843

                                                                        
Query: 486  atcattttctcatgtatattgagaaggaagcgcacatcatctgttgctgctcgtatcatc 545
            |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 842  atcattttctcatgtatactgagaaggaagcggacatcatctgtggctgctcgaatcatc 783

                                                                        
Query: 546  atttcagacaagggcctatttttccagaaatttgggtcctgccttagaagggtacggact 605
            |||||||| || |||||||   |||| || || |||||||||||||||||||||||||||
Sbjct: 782  atttcagataaaggcctatgcgtccaaaagttagggtcctgccttagaagggtacggact 723

                                                                 
Query: 606  tcttccttttcaggatatggcattccacaatagcgaggatcagcaagaaggct 658
            ||||||||||||||||||| |||||||||||| || ||||||||||| |||||
Sbjct: 722  tcttccttttcaggatatgccattccacaatatcggggatcagcaaggaggct 670

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  274 bits (138), Expect = 4e-70
 Identities = 183/198 (92%)
 Strand = Plus / Plus

                                                                            
Query: 367      cagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcacc 426
                |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 21696812 cagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcacc 21696871

                                                                            
Query: 427      tgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcca 486
                |||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct: 21696872 tgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcca 21696931

                                                                            
Query: 487      tcattttctcatgtatattgagaaggaagcgcacatcatctgttgctgctcgtatcatca 546
                ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 21696932 tcattttctcatgtatactgagaaggaagcggacatcatctgtggctgctcgaatcatca 21696991

                                  
Query: 547      tttcagacaagggcctat 564
                ||||||| || |||||||
Sbjct: 21696992 tttcagataaaggcctat 21697009



 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                            
Query: 237      ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 296
                ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 21696325 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 21696384

                                                                
Query: 297      tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 344
                || |||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 21696385 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 21696432



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                                 
Query: 583      cctgccttagaagggtacggacttcttccttttcaggatatggcattcc 631
                |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 21697201 cctgccttagaagggtacggacttcttccttttcaggatatgccattcc 21697249



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                            
Query: 117      ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 176
                ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 21695275 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 21695334

                                  
Query: 177      ggtccaatgatgaatacc 194
                ||||||||||||||||||
Sbjct: 21695335 ggtccaatgatgaatacc 21695352



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 191      taccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaa 242
                |||||| |||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct: 21696183 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 21696234



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 43       agtaccacatgcatttctgtat 64
                ||||||||||||||||||||||
Sbjct: 21695180 agtaccacatgcatttctgtat 21695201

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>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0002B05
          Length = 141275

 Score =  274 bits (138), Expect = 4e-70
 Identities = 183/198 (92%)
 Strand = Plus / Plus

                                                                         
Query: 367   cagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcacc 426
             |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 48863 cagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcacc 48922

                                                                         
Query: 427   tgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcca 486
             |||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct: 48923 tgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcca 48982

                                                                         
Query: 487   tcattttctcatgtatattgagaaggaagcgcacatcatctgttgctgctcgtatcatca 546
             ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 48983 tcattttctcatgtatactgagaaggaagcggacatcatctgtggctgctcgaatcatca 49042

                               
Query: 547   tttcagacaagggcctat 564
             ||||||| || |||||||
Sbjct: 49043 tttcagataaaggcctat 49060



 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                         
Query: 237   ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 296
             ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 48376 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 48435

                                                             
Query: 297   tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 344
             || |||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 48436 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 48483



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                              
Query: 583   cctgccttagaagggtacggacttcttccttttcaggatatggcattcc 631
             |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 49252 cctgccttagaagggtacggacttcttccttttcaggatatgccattcc 49300



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 117   ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 176
             ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 47326 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 47385

                               
Query: 177   ggtccaatgatgaatacc 194
             ||||||||||||||||||
Sbjct: 47386 ggtccaatgatgaatacc 47403



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 191   taccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaa 242
             |||||| |||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct: 48234 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 48285



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 43    agtaccacatgcatttctgtat 64
             ||||||||||||||||||||||
Sbjct: 47231 agtaccacatgcatttctgtat 47252

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>gb|BT017548.1| Zea mays clone EL01N0423H02.c mRNA sequence
          Length = 428

 Score =  180 bits (91), Expect = 4e-42
 Identities = 160/183 (87%)
 Strand = Plus / Minus

                                                                       
Query: 116 tctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcac 175
           |||||| || |||||||||||||| || | ||| ||||| || || |||||||| |||||
Sbjct: 193 tctctagaactccagcattcggcctctgaagatggcctcggctttcctgacttcattcac 134

                                                                       
Query: 176 tggtccaatgatgaataccctatctggaggcccctttgcaccaccgatatggatttcaac 235
           || |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 133 tgatccaatgatgaaaaccctatctggaggccccttagcaccaccaatatggatttcaac 74

                                                                       
Query: 236 attgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccat 295
            |||||||||||||||||  ||||||| |  || || |||||||||||||| ||||||||
Sbjct: 73  gttgcaagattctttcacaaccattatagttgacccctttctgccaataactcgtcccat 14

              
Query: 296 ttt 298
           |||
Sbjct: 13  ttt 11

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>ref|XM_741410.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g03170)
           partial mRNA
          Length = 564

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 270 ccttttctgccaataacgcgtcc 292
           |||||||||||||||||||||||
Sbjct: 139 ccttttctgccaataacgcgtcc 161

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>gb|AC008008.2| Homo sapiens Xp22 PAC RPCI6-102 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 167257

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 489   attttctcatgtatattgagaa 510
             ||||||||||||||||||||||
Sbjct: 59256 attttctcatgtatattgagaa 59235

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 607      cttccttttcaggatatggcat 628
                ||||||||||||||||||||||
Sbjct: 13045049 cttccttttcaggatatggcat 13045028

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>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0531C01
          Length = 158574

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 607   cttccttttcaggatatggcat 628
             ||||||||||||||||||||||
Sbjct: 83850 cttccttttcaggatatggcat 83829

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>dbj|AK059857.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-B02, full
           insert sequence
          Length = 1138

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 607 cttccttttcaggatatggcat 628
           ||||||||||||||||||||||
Sbjct: 30  cttccttttcaggatatggcat 51

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>dbj|AP002782.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-660M18, complete
             sequences
          Length = 153078

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 47    ccacatgcatttctgtattcct 68
             ||||||||||||||||||||||
Sbjct: 24785 ccacatgcatttctgtattcct 24764

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>gb|BT013287.1| Lycopersicon esculentum clone 134897R, mRNA sequence
          Length = 1244

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 274 ttctgccaataacgcgtcccatttt 298
           ||||||||||||| |||||||||||
Sbjct: 889 ttctgccaataacacgtcccatttt 865

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>emb|AL109659.20|HSJ1024N4 Human DNA sequence from clone RP5-1024N4 on chromosome 1p32.1-33 Contains
              two novel genes, a novel pseudogene, a novel gene
              (LOC200010), a novel gene similar to connexin and one CpG
              island, complete sequence
          Length = 181678

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      ctcttatttttattcttgtcc 21
              |||||||||||||||||||||
Sbjct: 119860 ctcttatttttattcttgtcc 119880

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>gb|AC023050.36| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186864

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 382    gaggtggccaatctgcctgct 402
              |||||||||||||||||||||
Sbjct: 135064 gaggtggccaatctgcctgct 135044

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>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 131209

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 360    atgtcatcagggacagttgga 380
              |||||||||||||||||||||
Sbjct: 113158 atgtcatcagggacagttgga 113138

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>gb|DQ284465.1| Solanum tuberosum clone 096G02 3'-5' exonuclease domain-containing
           protein-like mRNA, complete cds
          Length = 1249

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 274 ttctgccaataacgcgtcccatttt 298
           ||||||||||||| |||||||||||
Sbjct: 867 ttctgccaataacacgtcccatttt 843

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>ref|XM_632648.1| Dictyostelium discoideum myosin II heavy chain (DDB0191444), partial
            mRNA
          Length = 6351

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  ctgttgctgctcgtatcatc 545
            ||||||||||||||||||||
Sbjct: 2366 ctgttgctgctcgtatcatc 2385

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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    tcacggccattattgacgat 269
              ||||||||||||||||||||
Sbjct: 939367 tcacggccattattgacgat 939386

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>gb|AC121095.16| Mus musculus chromosome 14, clone RP24-324H17, complete sequence
          Length = 142953

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 647    agcaagaaggctcacgaagggata 670
              |||||||||||||| |||||||||
Sbjct: 134260 agcaagaaggctcatgaagggata 134237

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     atggatttcaacattgcaag 243
               ||||||||||||||||||||
Sbjct: 4500152 atggatttcaacattgcaag 4500171

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>gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosome 9, complete sequence
          Length = 176237

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 487   tcattttctcatgtatattgagaa 510
             ||||||||||||||| ||||||||
Sbjct: 27965 tcattttctcatgtaaattgagaa 27942

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>gb|AC136699.23| Mus musculus chromosome 9, clone RP23-18E24, complete sequence
          Length = 229184

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 487    tcattttctcatgtatattgagaa 510
              ||||||||||||||| ||||||||
Sbjct: 186070 tcattttctcatgtaaattgagaa 186047

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>ref|XM_446615.1| Candida glabrata CBS138, CAGL0G05830g partial mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  cttctccatcattttctcat 498
            ||||||||||||||||||||
Sbjct: 1905 cttctccatcattttctcat 1886

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>emb|BX005268.26| Zebrafish DNA sequence from clone DKEY-11L22 in linkage group 14,
              complete sequence
          Length = 182719

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    caaaagtcctttctctaaaa 124
              ||||||||||||||||||||
Sbjct: 119686 caaaagtcctttctctaaaa 119705

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>emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 in linkage group 5,
            complete sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  caaaagtcctttctctaaaa 124
            ||||||||||||||||||||
Sbjct: 1964 caaaagtcctttctctaaaa 1983

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>gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, complete sequence
          Length = 154037

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    ctttgcttaacttctccatc 488
              ||||||||||||||||||||
Sbjct: 117696 ctttgcttaacttctccatc 117715

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>emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in linkage group 3,
             complete sequence
          Length = 111124

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tgcaccaccgatatggattt 231
             ||||||||||||||||||||
Sbjct: 15731 tgcaccaccgatatggattt 15712

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>emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chromosome 6, complete
              sequence
          Length = 169159

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    ctttctctaaaattccagca 132
              ||||||||||||||||||||
Sbjct: 112313 ctttctctaaaattccagca 112294

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>emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on chromosome 6 Contains a CpG
              island, complete sequence
          Length = 170970

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 49     acatgcatttctgtattccttgtgttca 76
              |||| |||||||||||||| ||||||||
Sbjct: 139743 acattcatttctgtattccctgtgttca 139716

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>emb|AL096863.13|HS1119I23 Human DNA sequence from clone RP5-1119I23 on chromosome 10, complete
             sequence
          Length = 98818

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   caacattgcaagattctttc 251
             ||||||||||||||||||||
Sbjct: 23506 caacattgcaagattctttc 23487

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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    cttctccatcattttctcat 498
              ||||||||||||||||||||
Sbjct: 562570 cttctccatcattttctcat 562589

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>gb|AC154487.2| Mus musculus BAC clone RP24-119I4 from chromosome 14, complete sequence
          Length = 199036

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 647   agcaagaaggctcacgaagggata 670
             |||||||||||||| |||||||||
Sbjct: 29308 agcaagaaggctcatgaagggata 29285

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>emb|AL161982.1|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761J1224 (from clone
            DKFZp761J1224)
          Length = 5412

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  caacattgcaagattctttc 251
            ||||||||||||||||||||
Sbjct: 2048 caacattgcaagattctttc 2029

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>emb|CR388146.9| Zebrafish DNA sequence from clone DKEY-205F14 in linkage group 5,
             complete sequence
          Length = 19924

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   caaaagtcctttctctaaaa 124
             ||||||||||||||||||||
Sbjct: 19888 caaaagtcctttctctaaaa 19907

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>emb|CR293500.7| Zebrafish DNA sequence from clone DKEY-211I20 in linkage group 18,
              complete sequence
          Length = 164140

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    caaaagtcctttctctaaaa 124
              ||||||||||||||||||||
Sbjct: 136757 caaaagtcctttctctaaaa 136776

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>emb|BX511020.10| Zebrafish DNA sequence from clone RP71-9C18, complete sequence
          Length = 160830

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   caaaagtcctttctctaaaa 124
             ||||||||||||||||||||
Sbjct: 17818 caaaagtcctttctctaaaa 17799

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>ref|XM_698012.1| PREDICTED: Danio rerio hypothetical protein LOC555615 (LOC555615),
           mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 479 cttctccatcattttctcatgtat 502
           ||||||||||||| ||||||||||
Sbjct: 795 cttctccatcattgtctcatgtat 772

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>emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on chromosome 2, complete
             sequence
          Length = 157571

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   caaaagtcctttctctaaaa 124
             ||||||||||||||||||||
Sbjct: 90135 caaaagtcctttctctaaaa 90116

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>emb|AL807749.21| Zebrafish DNA sequence from clone CH211-197F20, complete sequence
          Length = 198777

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  caaaagtcctttctctaaaa 124
            ||||||||||||||||||||
Sbjct: 9459 caaaagtcctttctctaaaa 9478

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>emb|BX324003.7| Zebrafish DNA sequence from clone DKEY-81I14 in linkage group 17,
              complete sequence
          Length = 247607

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    caaaagtcctttctctaaaa 124
              ||||||||||||||||||||
Sbjct: 151546 caaaagtcctttctctaaaa 151527

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>emb|BX276122.23| Zebrafish DNA sequence from clone CH211-232H22, complete sequence
          Length = 186714

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    caaaagtcctttctctaaaa 124
              ||||||||||||||||||||
Sbjct: 182384 caaaagtcctttctctaaaa 182403

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>emb|AL732504.23| Mouse DNA sequence from clone RP23-177I18 on chromosome 4, complete
             sequence
          Length = 192031

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   ggacagttggaagaggtggc 389
             ||||||||||||||||||||
Sbjct: 53883 ggacagttggaagaggtggc 53864

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>gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 178752

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    attccttgtgttcaaaagat 82
             ||||||||||||||||||||
Sbjct: 60006 attccttgtgttcaaaagat 60025

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>ref|NM_067199.1| Caenorhabditis elegans Y75B8A.28 (Y75B8A.28) mRNA, complete cds
          Length = 1092

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 612 ttttcaggatatggcattccacaa 635
           ||||||||||||| ||||||||||
Sbjct: 412 ttttcaggatatgccattccacaa 435

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>emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in linkage group 14, complete
              sequence
          Length = 265520

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    caaaagtcctttctctaaaa 124
              ||||||||||||||||||||
Sbjct: 103155 caaaagtcctttctctaaaa 103136

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>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence
          Length = 136822

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    ttcagcttcaatgtcatcag 369
              ||||||||||||||||||||
Sbjct: 133796 ttcagcttcaatgtcatcag 133815

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>emb|BX649616.5| Zebrafish DNA sequence from clone CH211-165K17 in linkage group 18,
              complete sequence
          Length = 131062

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    caaaagtcctttctctaaaa 124
              ||||||||||||||||||||
Sbjct: 117386 caaaagtcctttctctaaaa 117405

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>emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 in linkage group 1,
             complete sequence
          Length = 176961

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 479   cttctccatcattttctcatgtat 502
             ||||||||||||| ||||||||||
Sbjct: 83334 cttctccatcattgtctcatgtat 83311

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>emb|BX510947.20| Zebrafish DNA sequence from clone DKEY-226F16 in linkage group 4,
             complete sequence
          Length = 125275

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   caaaagtcctttctctaaaa 124
             ||||||||||||||||||||
Sbjct: 21736 caaaagtcctttctctaaaa 21717

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>emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, complete sequence
          Length = 298406

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 612    ttttcaggatatggcattccacaa 635
              ||||||||||||| ||||||||||
Sbjct: 251790 ttttcaggatatgccattccacaa 251813

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>emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in linkage group 4, complete
              sequence
          Length = 263674

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    caaaagtcctttctctaaaa 124
              ||||||||||||||||||||
Sbjct: 154217 caaaagtcctttctctaaaa 154236

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>emb|BX649283.16| Zebrafish DNA sequence from clone DKEYP-86C4 in linkage group 14,
             complete sequence
          Length = 193551

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   caaaagtcctttctctaaaa 124
             ||||||||||||||||||||
Sbjct: 14342 caaaagtcctttctctaaaa 14323

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>gb|U22443.1|EFU22443 Ellobius fuscocapillus sex-determining protein (Sry) gene, partial
           cds
          Length = 153

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 ccatttttccaggaggcaca 311
           ||||||||||||||||||||
Sbjct: 121 ccatttttccaggaggcaca 140

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>gb|M14628.1|DDIMYHC D.discoideum myosin heavy chain gene, complete cds
          Length = 6681

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  ctgttgctgctcgtatcatc 545
            ||||||||||||||||||||
Sbjct: 2435 ctgttgctgctcgtatcatc 2454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,154,971
Number of Sequences: 3902068
Number of extensions: 7154971
Number of successful extensions: 134402
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134128
Number of HSP's gapped (non-prelim): 274
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result