ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdg21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OPA3_SCHPO (Q9P7W0) Putative OPA3-like protein C1703.11 38 0.006
2OPA32_DROME (Q9VCG3) Putative OPA3-like protein CG13603 35 0.070
3OPA3_HUMAN (Q9H6K4) Optic atrophy 3 protein 30 1.3

>OPA3_SCHPO (Q9P7W0) Putative OPA3-like protein C1703.11|
          Length = 218

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -1

Query: 170 NVAIRPLDEXKAVQVATDLIGEGFIFSVAVXALIFE 63
           NV +RPL++ KAV      + E FIF+VA  A++FE
Sbjct: 64  NVRLRPLNDAKAVDAGATFLSETFIFTVAGGAILFE 99



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>OPA32_DROME (Q9VCG3) Putative OPA3-like protein CG13603|
          Length = 255

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -1

Query: 167 VAIRPLDEXKAVQVATDLIGEGFIFSVAVXALIFE 63
           V + PL+E  A+++  +L+GE  IFS+    LIFE
Sbjct: 67  VNVPPLNEAMAIELGANLLGEFIIFSIGAGLLIFE 101



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>OPA3_HUMAN (Q9H6K4) Optic atrophy 3 protein|
          Length = 179

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 191 RIYGHATNVAIRPLDEXKAVQVATDLIGEGFIFSVAVXALIFE 63
           RI G    V I+PL+E  A ++  +L+GE  IF V    L+ E
Sbjct: 59  RIMGFRGTV-IKPLNEEAAAELGAELLGEATIFIVGGGCLVLE 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,045,150
Number of Sequences: 219361
Number of extensions: 187954
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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