ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdg21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E02, full insert sequence Length = 960 Score = 224 bits (113), Expect = 8e-56 Identities = 177/200 (88%) Strand = Plus / Minus Query: 1 tcctcaagttcctgtttacgagcttcctnctttctagcctntgacctagcactnctttgc 60 |||||||||||||||||||||||||||| ||| ||||||| |||||| ||| | |||||| Sbjct: 457 tcctcaagttcctgtttacgagcttcctccttcctagcctctgaccttgcatttctttgc 398 Query: 61 acctcgaaaattaaagcancgacagcaaccgaaaagatgaagccttctccaatgagatct 120 ||||| |||||||||||| | |||||||||||||| || |||||||||||||||||||| Sbjct: 397 acctcaaaaattaaagcagcaacagcaaccgaaaaaataaagccttctccaatgagatcc 338 Query: 121 gtagcaacttgtactgccttctnctcatctaaaggtctgatagccacattagtagcatgc 180 |||||| ||||||| || |||| ||||| ||||||| |||| |||||| || |||||| Sbjct: 337 gtagcagcttgtacagctttctcctcatttaaaggtgtgatttccacatctgttgcatgc 278 Query: 181 ccataaatgcgcctttgtat 200 |||||||||||||||||||| Sbjct: 277 ccataaatgcgcctttgtat 258
>ref|NM_188722.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 222 bits (112), Expect = 3e-55 Identities = 176/199 (88%) Strand = Plus / Minus Query: 2 cctcaagttcctgtttacgagcttcctnctttctagcctntgacctagcactnctttgca 61 ||||||||||||||||||||||||||| ||| ||||||| |||||| ||| | ||||||| Sbjct: 556 cctcaagttcctgtttacgagcttcctccttcctagcctctgaccttgcatttctttgca 497 Query: 62 cctcgaaaattaaagcancgacagcaaccgaaaagatgaagccttctccaatgagatctg 121 |||| |||||||||||| | |||||||||||||| || |||||||||||||||||||| | Sbjct: 496 cctcaaaaattaaagcagcaacagcaaccgaaaaaataaagccttctccaatgagatccg 437 Query: 122 tagcaacttgtactgccttctnctcatctaaaggtctgatagccacattagtagcatgcc 181 ||||| ||||||| || |||| ||||| ||||||| |||| |||||| || ||||||| Sbjct: 436 tagcagcttgtacagctttctcctcatttaaaggtgtgatttccacatctgttgcatgcc 377 Query: 182 cataaatgcgcctttgtat 200 ||||||||||||||||||| Sbjct: 376 cataaatgcgcctttgtat 358
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 115 bits (58), Expect = 5e-23 Identities = 84/94 (89%) Strand = Plus / Minus Query: 2 cctcaagttcctgtttacgagcttcctnctttctagcctntgacctagcactnctttgca 61 ||||||||||||||||||||||||||| ||| ||||||| |||||| ||| | ||||||| Sbjct: 7853151 cctcaagttcctgtttacgagcttcctccttcctagcctctgaccttgcatttctttgca 7853092 Query: 62 cctcgaaaattaaagcancgacagcaaccgaaaa 95 |||| |||||||||||| | ||||||||| |||| Sbjct: 7853091 cctcaaaaattaaagcagcaacagcaacctaaaa 7853058 Score = 115 bits (58), Expect = 5e-23 Identities = 99/113 (87%) Strand = Plus / Minus Query: 88 accgaaaagatgaagccttctccaatgagatctgtagcaacttgtactgccttctnctca 147 |||||||| || |||||||||||||||||||| |||||| ||||||| || |||| |||| Sbjct: 7852906 accgaaaaaataaagccttctccaatgagatccgtagcagcttgtacagctttctcctca 7852847 Query: 148 tctaaaggtctgatagccacattagtagcatgcccataaatgcgcctttgtat 200 | ||||||| |||| |||||| || |||||||||||||||||||||||||| Sbjct: 7852846 tttaaaggtgtgatttccacatctgttgcatgcccataaatgcgcctttgtat 7852794
>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1066G12 Length = 136263 Score = 115 bits (58), Expect = 5e-23 Identities = 84/94 (89%) Strand = Plus / Minus Query: 2 cctcaagttcctgtttacgagcttcctnctttctagcctntgacctagcactnctttgca 61 ||||||||||||||||||||||||||| ||| ||||||| |||||| ||| | ||||||| Sbjct: 48097 cctcaagttcctgtttacgagcttcctccttcctagcctctgaccttgcatttctttgca 48038 Query: 62 cctcgaaaattaaagcancgacagcaaccgaaaa 95 |||| |||||||||||| | ||||||||| |||| Sbjct: 48037 cctcaaaaattaaagcagcaacagcaacctaaaa 48004 Score = 115 bits (58), Expect = 5e-23 Identities = 99/113 (87%) Strand = Plus / Minus Query: 88 accgaaaagatgaagccttctccaatgagatctgtagcaacttgtactgccttctnctca 147 |||||||| || |||||||||||||||||||| |||||| ||||||| || |||| |||| Sbjct: 47852 accgaaaaaataaagccttctccaatgagatccgtagcagcttgtacagctttctcctca 47793 Query: 148 tctaaaggtctgatagccacattagtagcatgcccataaatgcgcctttgtat 200 | ||||||| |||| |||||| || |||||||||||||||||||||||||| Sbjct: 47792 tttaaaggtgtgatttccacatctgttgcatgcccataaatgcgcctttgtat 47740
>gb|AY593992.1| Homo sapiens upstream transcription factor 1 (USF1) gene, complete cds Length = 9549 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gaaaagatgaagccttctcca 111 ||||||||||||||||||||| Sbjct: 6764 gaaaagatgaagccttctcca 6744
>emb|AL591806.16| Human DNA sequence from clone RP11-544M22 on chromosome 1 Contains the 3' end of a novel gene, the 5' end of the ITLN2 gene for intelectin 2, the F11R gene for F11 receptor, the gene for KAT protein, the USF1 gene for upstream transcription factor 1, the gene for a novel protein, the PVRL4 gene for poliovirus receptor-related 4, a novel gene, the gene for a novel protein (MGC33338), the PFDN2 gene for prefoldin 2, the NIT1 gene for nitrilase 1 and the DEDD gene for death effector domain containing, complete sequence Length = 200822 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 gaaaagatgaagccttctcca 111 ||||||||||||||||||||| Sbjct: 94102 gaaaagatgaagccttctcca 94122
>gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, complete sequence Length = 187298 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 aaaagatgaagccttctccaa 112 ||||||||||||||||||||| Sbjct: 63776 aaaagatgaagccttctccaa 63796
>gb|AY110607.1| Zea mays CL3077_1 mRNA sequence Length = 920 Score = 42.1 bits (21), Expect = 0.64 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 tgacctagcactnctttgcacctc 65 |||||||||||| ||||||||||| Sbjct: 427 tgacctagcacttctttgcacctc 450
>dbj|AB017568.1| Homo sapiens USF1 gene, complete cds Length = 9724 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gaaaagatgaagccttctcca 111 ||||||||||||||||||||| Sbjct: 8502 gaaaagatgaagccttctcca 8482
>gb|AC161285.2| Pan troglodytes BAC clone CH251-310B11 from chromosome 7, complete sequence Length = 171038 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 ccttctccaatgagatctg 121 ||||||||||||||||||| Sbjct: 163372 ccttctccaatgagatctg 163390
>gb|AC161150.5| Pan troglodytes BAC clone CH251-410K2 from chromosome 7, complete sequence Length = 149746 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 ccttctccaatgagatctg 121 ||||||||||||||||||| Sbjct: 56795 ccttctccaatgagatctg 56813
>emb|CR730213.2|CNS0GQDN Tetraodon nigroviridis full-length cDNA Length = 1278 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 178 tgcccataaatgcgccttt 196 ||||||||||||||||||| Sbjct: 923 tgcccataaatgcgccttt 905
>emb|AL122006.11|HSJ730H16 Human DNA sequence from clone RP4-730H16 on chromosome 1p13.1-13.3, complete sequence Length = 151391 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 ccttctccaatgagatctg 121 ||||||||||||||||||| Sbjct: 91952 ccttctccaatgagatctg 91970
>emb|BX088718.7| Zebrafish DNA sequence from clone DKEY-185E18, complete sequence Length = 192836 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 149 ctaaaggtctgatagccac 167 ||||||||||||||||||| Sbjct: 73993 ctaaaggtctgatagccac 73975
>gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq23, complete sequence Length = 72291 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 tcctcaagttcctgtttac 19 ||||||||||||||||||| Sbjct: 9366 tcctcaagttcctgtttac 9348
>gb|DQ141334.1| Danio rerio subclone lambdaZf10 I-FBPL gene, partial cds Length = 10422 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 ctaaaggtctgatagccacatta 171 ||||||| ||||||||||||||| Sbjct: 6845 ctaaaggactgatagccacatta 6867
>emb|BX005345.12| Mouse DNA sequence from clone RP23-344C21 on chromosome X, complete sequence Length = 208344 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 145 tcatctaaaggtctgatag 163 ||||||||||||||||||| Sbjct: 89115 tcatctaaaggtctgatag 89133
>gb|AC104153.2| Papio anubis clone RP41-431I4, complete sequence Length = 191465 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 ccttctccaatgagatctg 121 ||||||||||||||||||| Sbjct: 85939 ccttctccaatgagatctg 85921 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,064,891 Number of Sequences: 3902068 Number of extensions: 1064891 Number of successful extensions: 54838 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54786 Number of HSP's gapped (non-prelim): 52 length of query: 200 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 178 effective length of database: 17,147,199,772 effective search space: 3052201559416 effective search space used: 3052201559416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
