ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdg16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAF1_XENLA (P09560) RAF proto-oncogene serine/threonine-protein ... 32 1.0
2PUPA_PSEPU (P25184) Ferric-pseudobactin 358 receptor precursor 30 3.9
3JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone dem... 29 6.7

>RAF1_XENLA (P09560) RAF proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (C-RAF)
          Length = 638

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 31/101 (30%), Positives = 40/101 (39%)
 Frame = +1

Query: 169 FACYRSGFKMKMPASVQYPNL*KVD*SNARQHLSR*QPCSNNLVLHGSTTPRA*GSHLFS 348
           F C   G+K     S + P +  VD SN RQ L    P  NN+           GSH   
Sbjct: 162 FRCQTCGYKFHEHCSTKVPTM-CVDWSNIRQLLLFPNP--NNI---------EGGSHTLP 209

Query: 349 SQTKSRAIAHVPIRQHPISSNRQHPASSPFFHAAPLQAKTC 471
           S T  R    V I   P+SS +++    PF  + P     C
Sbjct: 210 SLTMRRIGESVRI---PVSSQQRYSTPHPFSFSTPSPVSEC 247



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>PUPA_PSEPU (P25184) Ferric-pseudobactin 358 receptor precursor|
          Length = 819

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 41  HTXRNYAGGLQQQTSHTWQYGISS 112
           +T  NY  GL+QQ +H WQ+ +++
Sbjct: 395 YTTTNYTFGLEQQLAHDWQFKLAA 418



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>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C)
          Length = 2350

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 262 HLSR*QPCSNNLVLHGSTTPRA*GSHLFSSQTKSRAIAHVPIRQHPISSNRQHPASSP 435
           H S  + C N    H + TP   G HL +  T    +    I  HP++S   HP   P
Sbjct: 560 HSSSHRTCLNPGTHHPALTP---GPHLLAGSTSQTPLP--TINTHPLTSGPHHPVHHP 612


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,902,220
Number of Sequences: 219361
Number of extensions: 1478052
Number of successful extensions: 2872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2865
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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