No.
Definition
Score (bits)
E Value
1 ref|XM_466018.1| Oryza sativa (japonica cultivar-group), mRNA
442
e-121
2 dbj|AK121782.1| Oryza sativa (japonica cultivar-group) cDNA clon...
442
e-121
3 gb|AY106720.1| Zea mays PCO113091 mRNA sequence
424
e-115
4 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
178
2e-41
5 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
178
2e-41
6 dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D...
178
2e-41
7 dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D...
178
2e-41
8 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
178
2e-41
9 emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa...
178
2e-41
10 emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa...
178
2e-41
11 ref|NM_101907.2| Arabidopsis thaliana transferase, transferring ...
48
0.039
12 gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana...
48
0.039
13 gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana...
48
0.039
14 ref|NM_106675.3| Arabidopsis thaliana EMB1427; tubulin binding A...
44
0.62
15 gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complet...
44
0.62
16 gb|AC123726.11| Mus musculus chromosome 3, clone RP23-436F15, co...
42
2.4
17 gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete...
42
2.4
18 gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I...
42
2.4
19 gb|AC154172.4| Mus musculus BAC clone RP23-429K7 from chromosome...
42
2.4
20 gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18...
42
2.4
21 gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
40
9.6
22 emb|AL109914.16|HSBA27F12 Human DNA sequence from clone RP11-27F...
40
9.6
23 gb|BT009330.1| Triticum aestivum clone wlm24.pk0026.a3:fis, full...
40
9.6
24 emb|AL114785.1|CNS01BWP Botrytis cinerea strain T4 cDNA library
40
9.6
25 emb|AL114137.1|CNS01BEP Botrytis cinerea strain T4 cDNA library
40
9.6
26 gb|AC092680.2| Homo sapiens BAC clone RP11-694B12 from 2, comple...
40
9.6
27 dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.6
28 dbj|AP001357.5| Homo sapiens genomic DNA, chromosome 18 clone:RP...
40
9.6
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 178 bits (90), Expect = 2e-41
Identities = 117/126 (92%)
Strand = Plus / Minus
Query: 478 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 537
||||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||
Sbjct: 25644451 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 25644392
Query: 538 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccacgc 597
||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 25644391 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccacgc 25644332
Query: 598 actatg 603
||||||
Sbjct: 25644331 actatg 25644326
Score = 113 bits (57), Expect = 8e-22
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 188 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 247
|||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 25644945 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 25644886
Query: 248 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 304
|| || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 25644885 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 25644829
Score = 107 bits (54), Expect = 5e-20
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 614 tccatgacatattgatgaaatgcatcgacaaaatggaggagcttctgccctactattaag 673
|||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 25644245 tccatgacatattgatgaaatgcatcaacaaaatgaaggagcttctgctcaactattaaa 25644186
Query: 674 tgttgtttaaaattaggcgtcgtgct 699
||||| ||||||||| |||| |||||
Sbjct: 25644185 tgttgcttaaaattatgcgtagtgct 25644160
Score = 67.9 bits (34), Expect = 4e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 320 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 373
||||||||||| |||||||||||||| ||||||| |||||||| |||||||||
Sbjct: 25644706 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 25644653
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 178 bits (90), Expect = 2e-41
Identities = 117/126 (92%)
Strand = Plus / Plus
Query: 478 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 537
||||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||
Sbjct: 19111189 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 19111248
Query: 538 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccacgc 597
||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 19111249 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccacgc 19111308
Query: 598 actatg 603
||||||
Sbjct: 19111309 actatg 19111314
Score = 113 bits (57), Expect = 8e-22
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 188 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 247
|||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 19110696 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 19110755
Query: 248 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 304
|| || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 19110756 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 19110812
Score = 105 bits (53), Expect = 2e-19
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 614 tccatgacatattgatgaaatgcatcgacaaaatggaggagcttctgccctactattaag 673
|||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 19111395 tccatgacatattgatgaaatgcatcaacaaaatgaaggagcttctgctcaactattaaa 19111454
Query: 674 tgttgtttaaaattaggcgtcgtgctgcc 702
||||| ||||||||| || | ||||||||
Sbjct: 19111455 tgttgcttaaaattatgcatagtgctgcc 19111483
Score = 75.8 bits (38), Expect = 2e-10
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 320 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 373
||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 19110928 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 19110981
>dbj|AP004772.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0415B12
Length = 157419
Score = 178 bits (90), Expect = 2e-41
Identities = 117/126 (92%)
Strand = Plus / Plus
Query: 478 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 537
||||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||
Sbjct: 9438 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 9497
Query: 538 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccacgc 597
||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 9498 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccacgc 9557
Query: 598 actatg 603
||||||
Sbjct: 9558 actatg 9563
Score = 113 bits (57), Expect = 8e-22
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 188 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 247
|||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 8945 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 9004
Query: 248 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 304
|| || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 9005 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 9061
Score = 105 bits (53), Expect = 2e-19
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 614 tccatgacatattgatgaaatgcatcgacaaaatggaggagcttctgccctactattaag 673
|||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 9644 tccatgacatattgatgaaatgcatcaacaaaatgaaggagcttctgctcaactattaaa 9703
Query: 674 tgttgtttaaaattaggcgtcgtgctgcc 702
||||| ||||||||| || | ||||||||
Sbjct: 9704 tgttgcttaaaattatgcatagtgctgcc 9732
Score = 75.8 bits (38), Expect = 2e-10
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 320 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 373
||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 9177 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 9230
>dbj|AP005749.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0047A17
Length = 149142
Score = 178 bits (90), Expect = 2e-41
Identities = 117/126 (92%)
Strand = Plus / Plus
Query: 478 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 537
||||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||
Sbjct: 116710 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 116769
Query: 538 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccacgc 597
||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 116770 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccacgc 116829
Query: 598 actatg 603
||||||
Sbjct: 116830 actatg 116835
Score = 113 bits (57), Expect = 8e-22
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 188 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 247
|||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 116217 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 116276
Query: 248 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 304
|| || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 116277 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 116333
Score = 105 bits (53), Expect = 2e-19
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 614 tccatgacatattgatgaaatgcatcgacaaaatggaggagcttctgccctactattaag 673
|||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 116916 tccatgacatattgatgaaatgcatcaacaaaatgaaggagcttctgctcaactattaaa 116975
Query: 674 tgttgtttaaaattaggcgtcgtgctgcc 702
||||| ||||||||| || | ||||||||
Sbjct: 116976 tgttgcttaaaattatgcatagtgctgcc 117004
Score = 75.8 bits (38), Expect = 2e-10
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 320 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 373
||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 116449 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 116502
>emb|AL731881.4 |CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 167131
Score = 178 bits (90), Expect = 2e-41
Identities = 117/126 (92%)
Strand = Plus / Minus
Query: 478 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 537
||||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||
Sbjct: 11689 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 11630
Query: 538 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccacgc 597
||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 11629 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccacgc 11570
Query: 598 actatg 603
||||||
Sbjct: 11569 actatg 11564
Score = 113 bits (57), Expect = 8e-22
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 188 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 247
|||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 12183 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 12124
Query: 248 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 304
|| || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 12123 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 12067
Score = 107 bits (54), Expect = 5e-20
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 614 tccatgacatattgatgaaatgcatcgacaaaatggaggagcttctgccctactattaag 673
|||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 11483 tccatgacatattgatgaaatgcatcaacaaaatgaaggagcttctgctcaactattaaa 11424
Query: 674 tgttgtttaaaattaggcgtcgtgct 699
||||| ||||||||| |||| |||||
Sbjct: 11423 tgttgcttaaaattatgcgtagtgct 11398
Score = 67.9 bits (34), Expect = 4e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 320 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 373
||||||||||| |||||||||||||| ||||||| |||||||| |||||||||
Sbjct: 11944 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 11891
>emb|AL732537.4 |CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 127003
Score = 178 bits (90), Expect = 2e-41
Identities = 117/126 (92%)
Strand = Plus / Plus
Query: 478 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 537
||||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||
Sbjct: 29267 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 29326
Query: 538 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccacgc 597
||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 29327 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccacgc 29386
Query: 598 actatg 603
||||||
Sbjct: 29387 actatg 29392
Score = 113 bits (57), Expect = 8e-22
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 188 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 247
|||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 28773 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 28832
Query: 248 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 304
|| || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 28833 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 28889
Score = 107 bits (54), Expect = 5e-20
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 614 tccatgacatattgatgaaatgcatcgacaaaatggaggagcttctgccctactattaag 673
|||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 29473 tccatgacatattgatgaaatgcatcaacaaaatgaaggagcttctgctcaactattaaa 29532
Query: 674 tgttgtttaaaattaggcgtcgtgct 699
||||| ||||||||| |||| |||||
Sbjct: 29533 tgttgcttaaaattatgcgtagtgct 29558
Score = 67.9 bits (34), Expect = 4e-08
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 320 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 373
||||||||||| |||||||||||||| ||||||| |||||||| |||||||||
Sbjct: 29012 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 29065
>dbj|AP001357.5 | Homo sapiens genomic DNA, chromosome 18 clone:RP11-807E13, complete
sequence
Length = 182382
Score = 40.1 bits (20), Expect = 9.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 tcaaggctgctgccgagcac 182
||||||||||||||||||||
Sbjct: 52440 tcaaggctgctgccgagcac 52421
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,281,535
Number of Sequences: 3902068
Number of extensions: 5281535
Number of successful extensions: 85531
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85380
Number of HSP's gapped (non-prelim): 151
length of query: 702
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 679
effective length of database: 17,143,297,704
effective search space: 11640299141016
effective search space used: 11640299141016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)