ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdf23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YL067_MIMIV (Q5UPD8) Putative BTB/POZ domain-containing protein L67 35 0.15
2DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 ant... 32 2.1
3NAPG_HAEIN (P44652) Ferredoxin-type protein napG homolog 30 4.7
4MURD_SYNEL (Q8DMN8) UDP-N-acetylmuramoylalanine--D-glutamate lig... 30 4.7
5KLKB1_MOUSE (P26262) Plasma kallikrein precursor (EC 3.4.21.34) ... 30 6.1
6MURD_VIBCH (Q9KPG5) UDP-N-acetylmuramoylalanine--D-glutamate lig... 30 8.0

>YL067_MIMIV (Q5UPD8) Putative BTB/POZ domain-containing protein L67|
          Length = 498

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 347 TPTNRT-CYGIETRSTDVPQLWNKIVLEKKTQLTIFELPH 463
           TP N   CYG  T+S D+ Q+ N +   K+ Q+T F  P+
Sbjct: 428 TPNNHVICYGYHTKSLDISQIINNLAENKEIQITSFGSPY 467



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>DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 334

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 171 SIYRGCLMSLGIWPWQGATYQRALAMTTLCGCFFCPDPR 55
           S +   L +LG W W    Y  A A   L GC+ C +PR
Sbjct: 120 SAHSTALCNLGYWVW----YTSAFAQALLIGCYACLNPR 154



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>NAPG_HAEIN (P44652) Ferredoxin-type protein napG homolog|
          Length = 279

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 105 PFDMLHLAKARSPGTSGNPYRCCR 176
           P+DMLHLA   SP  +G PY   R
Sbjct: 83  PYDMLHLASLLSPVEAGTPYFIAR 106



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>MURD_SYNEL (Q8DMN8) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 454

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 418 NLVPELWDISTSGFNSIASSICRCVPVVEA*LWFFDPPL 302
           N  P+ W IST G  ++   I + + + E  +WF D PL
Sbjct: 231 NRWPQAWWISTQGAIALPKGIAQGIYIAEDQVWFQDQPL 269



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>KLKB1_MOUSE (P26262) Plasma kallikrein precursor (EC 3.4.21.34) (Plasma|
           prekallikrein) (Kininogenin) (Fletcher factor)
           [Contains: Plasma kallikrein heavy chain; Plasma
           kallikrein light chain]
          Length = 638

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 168 IYRGCLMSLGIWPWQGATYQRALAMTTLCG 79
           I  G   SLG WPWQ +   + ++ T LCG
Sbjct: 391 IVGGTNASLGEWPWQVSLQVKLVSQTHLCG 420



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>MURD_VIBCH (Q9KPG5) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 440

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 440 VVSSFPVQSCS-RVVGHQYFWFQFHSKFYLSVCACRRSLALVLRSASRCLLQLLSVCPCS 264
           V+++ PVQ C   V GHQ+      ++FY S+ +  RS+   L+S    LL       C+
Sbjct: 362 VLATLPVQLCCFGVDGHQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLLS----PACA 417

Query: 263 SFSLF 249
           SF  F
Sbjct: 418 SFDQF 422


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,505,582
Number of Sequences: 219361
Number of extensions: 1914781
Number of successful extensions: 5290
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5289
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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