ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdf19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MATMC_SCHKA (Q6WRX6) Mating-type M-specific polypeptide Mc (mat-Mc) 34 0.39
2NIFA_AZOCA (P09133) Nif-specific regulatory protein 33 0.66
3MD1L1_CRIGR (Q80YF0) Mitotic spindle assembly checkpoint protein... 33 0.87
4MATMC_SCHPO (P10840) Mating-type M-specific polypeptide Mc (mat-Mc) 32 1.9
5UL48_HCMVA (P16785) Probable large tegument protein 32 2.5
6SYH_THEAC (Q9HLX5) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 32 2.5
7ATG7_MAGGR (Q52CS0) Autophagy-related protein 7 (Autophagy-relat... 32 2.5
8MD1L1_MOUSE (Q9WTX8) Mitotic spindle assembly checkpoint protein... 32 2.5
9LYS2_PENCH (O74298) L-aminoadipate-semialdehyde dehydrogenase la... 31 3.3
10CMLA_PSEAE (P32482) Chloramphenicol resistance protein 31 4.3
11ENH3_HUMAN (Q9N2J8) HERV-H_2q24.1 provirus ancestral Env polypro... 30 5.6
12DAP2_YEAST (P18962) Dipeptidyl aminopeptidase B (EC 3.4.14.-) (D... 30 9.6
13MOK11_SCHPO (Q09854) Cell wall alpha-1,3-glucan synthase mok11 (... 30 9.6

>MATMC_SCHKA (Q6WRX6) Mating-type M-specific polypeptide Mc (mat-Mc)|
          Length = 181

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = +2

Query: 275 ALHPSKKSLLKSPRITWQTILYSRRKHSPTVCSLPSLIDAREIFRLVGEAFRND 436
           +L    KS  ++PR     ILY + KH+  + S PS I+  ++ +LVGE +RN+
Sbjct: 92  SLRKDTKSTERTPRPPNAFILYRKEKHATLLKSNPS-INNSQVSKLVGEMWRNE 144



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>NIFA_AZOCA (P09133) Nif-specific regulatory protein|
          Length = 615

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 20/80 (25%), Positives = 36/80 (45%)
 Frame = -3

Query: 687 HFVPLNRMSLLEESLKRVDASDPFAICGIIDQFSKQPSLKGSSSLNRMDIINRCFSKGTV 508
           H VPL     +   L+      P      +D+F+K+  L    S   +D++ RC+  G V
Sbjct: 418 HVVPL-----ILPPLRERPGDIPKLAKNFLDRFNKENKLHMMLSAPAIDVLRRCYFPGNV 472

Query: 507 EEIISTLEQEAPSVSDKLVT 448
            E+ + + + A    D ++T
Sbjct: 473 RELENCIRRTATLAHDAVIT 492



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>MD1L1_CRIGR (Q80YF0) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic|
           arrest deficient-like protein 1) (MAD1-like 1)
          Length = 717

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 15/64 (23%), Positives = 35/64 (54%)
 Frame = -3

Query: 501 IISTLEQEAPSVSDKLVTAAIQSLRKASPTSLKISLASIREGRLQTVGECLRREYRMVCH 322
           ++  LE+  P  +D  V +++ S ++ +    ++  A ++  RL+ V +   +E+R VC+
Sbjct: 574 LVHALERGGPIPADLEVASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCY 633

Query: 321 VMRG 310
            + G
Sbjct: 634 TLTG 637



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>MATMC_SCHPO (P10840) Mating-type M-specific polypeptide Mc (mat-Mc)|
          Length = 181

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +2

Query: 275 ALHPSKKSLLKSPRITWQTILYSRRKHSPTVCSLPSLIDAREIFRLVGEAFRND 436
           +L     S  ++PR     ILY + KH+  + S PS I+  ++ +LVGE +RN+
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPS-INNSQVSKLVGEMWRNE 144



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>UL48_HCMVA (P16785) Probable large tegument protein|
          Length = 2241

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = -1

Query: 524 SPKEQSKKSYPLLNKKLQVCLINWLLLQSSHCGRPLLLV*KSLSHR*EKGGCKLLVSACA 345
           S  +Q+ ++Y  L+KKL   L+NWL     H G  L  +   LSH+  KG    L  A  
Sbjct: 425 SAAQQAVRAYLGLSKKLDAFLLNWL-----HHGLDLQRMHDYLSHKTTKGTYSTLDRALL 479

Query: 344 ENIE 333
           E ++
Sbjct: 480 EKMQ 483



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>SYH_THEAC (Q9HLX5) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 426

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 16/65 (24%), Positives = 36/65 (55%)
 Frame = -3

Query: 681 VPLNRMSLLEESLKRVDASDPFAICGIIDQFSKQPSLKGSSSLNRMDIINRCFSKGTVEE 502
           + +N   ++EE +  + +SDPF++  IID++ K         ++R + +++  S G  E+
Sbjct: 160 IRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHK---------ISREEFVDQLRSAGIGED 210

Query: 501 IISTL 487
            +S +
Sbjct: 211 GVSMI 215



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>ATG7_MAGGR (Q52CS0) Autophagy-related protein 7 (Autophagy-related|
           E1-like-activating enzyme ATG7)
          Length = 718

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 25/91 (27%), Positives = 35/91 (38%)
 Frame = +1

Query: 205 YPVMHLIQSWRHPLWVSIFIYQYRPTSLKEVSAEVTAHHMANHSIFSAQALTNSLQPPFS 384
           YP +H + +WR    ++ F  +     + EV     AH    H  F A+ +     P   
Sbjct: 160 YPTLHSVPAWRRDGPLARFSSKETTALVNEVGTFRYAHDTRQHGFFLAKKVPYRSGP--- 216

Query: 385 YRCERDFQTSRRGLPQ*LDCSSNQFIRHTWS 477
                     RRGLP+  D S    I  TWS
Sbjct: 217 ---------FRRGLPR--DDSDGDDIGFTWS 236



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>MD1L1_MOUSE (Q9WTX8) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic|
           arrest deficient-like protein 1) (MAD1-like 1)
          Length = 717

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 14/64 (21%), Positives = 34/64 (53%)
 Frame = -3

Query: 501 IISTLEQEAPSVSDKLVTAAIQSLRKASPTSLKISLASIREGRLQTVGECLRREYRMVCH 322
           ++  LE+  P  +D    +++ S ++ +    ++  A ++  RL+ V +   +E+R VC+
Sbjct: 574 LVHALERGGPIPADLEAASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCY 633

Query: 321 VMRG 310
            + G
Sbjct: 634 TLTG 637



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>LYS2_PENCH (O74298) L-aminoadipate-semialdehyde dehydrogenase large subunit (EC|
            1.2.1.31) (Alpha-aminoadipate reductase) (Alpha-AR)
          Length = 1409

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 63   HPSRLHLNPPHETSIRAWEQFFFHGKT*LVGSNLPNVDHRPWRSSLQ 203
            HP    +N  H T         F G   L G N+P VD+ PW +SL+
Sbjct: 1248 HPPATGVNVAHVTGHPRLRFNQFLGALELYGYNVPQVDYVPWSTSLE 1294



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>CMLA_PSEAE (P32482) Chloramphenicol resistance protein|
          Length = 419

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 186 WRSSLQLPRHALDPELAASTLGFDLYLPVSPYIP 287
           WR SL      L P    ++LG D+YLP  P++P
Sbjct: 8   WRYSLAATVLLLSPFDLLASLGMDMYLPAVPFMP 41



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>ENH3_HUMAN (Q9N2J8) HERV-H_2q24.1 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Env protein HERV-H/p59)
           (HERV-H/env59) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 555

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 431 NDWIAAVTNLSDTLGASCSRVDMISSTVPLEKHLLMMSILFRE 559
           ND+ A++T++S TL    ++VD +++ V   +  L +SIL  E
Sbjct: 426 NDFSASITDISQTLSVLQAQVDSLAAVVLQNRRGLGLSILLNE 468



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>DAP2_YEAST (P18962) Dipeptidyl aminopeptidase B (EC 3.4.14.-) (DPAP B) (YSCV)|
          Length = 818

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 223 IQSWRHPLWVSIFIYQYRPTSLKEVSAEV 309
           +Q+WRH  + S F+Y    +S +E+  EV
Sbjct: 161 VQNWRHSTFGSYFVYDKSSSSFEEIGNEV 189



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>MOK11_SCHPO (Q09854) Cell wall alpha-1,3-glucan synthase mok11 (EC 2.4.1.183)|
          Length = 2397

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 225 PELAASTLGFDLYLPVSPYIPQRSLC*SHRASH 323
           PEL     G+ L++P++ YIP+R        SH
Sbjct: 700 PELGLDGYGYKLFVPINEYIPRRPFITKFSPSH 732


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,522,473
Number of Sequences: 219361
Number of extensions: 2319174
Number of successful extensions: 5757
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5754
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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