No.
Definition
Score (bits)
E Value
1 ref|NM_197846.1| Oryza sativa (japonica cultivar-group) putative...
400
e-108
2 dbj|AK100907.1| Oryza sativa (japonica cultivar-group) cDNA clon...
373
e-100
3 dbj|AK071318.1| Oryza sativa (japonica cultivar-group) cDNA clon...
373
e-100
4 gb|AY108133.1| Zea mays PCO115187 mRNA sequence
289
6e-75
5 dbj|AK064773.1| Oryza sativa (japonica cultivar-group) cDNA clon...
184
3e-43
6 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
129
1e-26
7 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
129
1e-26
8 emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa...
129
1e-26
9 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
121
3e-24
10 gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003...
121
3e-24
11 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
121
3e-24
12 gb|AY106271.1| Zea mays PCO104773 mRNA sequence
74
7e-10
13 ref|XM_580523.2| PREDICTED: Bos taurus similar to cutaneous T-ce...
42
2.5
14 gb|AC137842.8| Mus musculus chromosome 15, clone RP23-91M6, comp...
40
9.8
15 ref|XM_714163.1| Candida albicans SC5314 hypothetical protein (C...
40
9.8
16 ref|XM_714046.1| Candida albicans SC5314 hypothetical protein (C...
40
9.8
17 gb|AC102091.7| Mus musculus chromosome 18, clone RP23-9K20, comp...
40
9.8
18 gb|AC162930.5| Mus musculus BAC clone RP23-221B16 from chromosom...
40
9.8
19 emb|AL136160.18| Human DNA sequence from clone RP11-16L6 on chro...
40
9.8
20 emb|AL136170.14| Human DNA sequence from clone RP5-1198E17 on ch...
40
9.8
21 emb|AL049761.11|HSDJ863C7 Human DNA sequence from clone RP5-863C...
40
9.8
22 gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, co...
40
9.8
23 emb|AL669814.16| Mouse DNA sequence from clone RP23-431J18 on ch...
40
9.8
24 emb|AL844147.9| Mouse DNA sequence from clone RP23-145N4 on chro...
40
9.8
25 gb|AC078999.4| Homo sapiens chromosome 18, clone RP11-104G8, com...
40
9.8
26 gb|AC090660.3| Homo sapiens chromosome 18, clone RP11-869O1, com...
40
9.8
27 gb|AC011143.6|AC011143 Homo sapiens chromosome 18, clone RP11-1O...
40
9.8
28 gb|AC006927.27| Homo sapiens 12 BAC RP11-444J21 (Roswell Park Ca...
40
9.8
29 emb|BX957260.10| Zebrafish DNA sequence from clone DKEY-1N7 in l...
40
9.8
30 emb|AL974310.15| Zebrafish DNA sequence from clone DKEY-14J6, co...
40
9.8
31 dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:...
40
9.8
32 emb|AL663030.12| Mouse DNA sequence from clone RP23-84C12 on chr...
40
9.8
33 dbj|AB002099.1| Candida tropicalis strain IFO 0618 DNA, repeat s...
40
9.8
34 emb|AL691487.9| Human DNA sequence from clone RP11-565A8 on chro...
40
9.8
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 129 bits (65), Expect = 1e-26
Identities = 80/85 (94%)
Strand = Plus / Minus
Query: 285 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 344
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9363724 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccattctatattctc 9363665
Query: 345 ggcgcaagcactcaccaacagtttg 369
| || ||||| ||||||||||||||
Sbjct: 9363664 gacgtaagcattcaccaacagtttg 9363640
Score = 81.8 bits (41), Expect = 3e-12
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 591 attgatcaataattccacatatagcaaatggatcagaagcgtccacccttttaagtgatt 650
||||||| ||||||||||||||||||||||||||||| | || ||| ||||||||||||
Sbjct: 9360002 attgatcgataattccacatatagcaaatggatcagatgtatcaacctttttaagtgatt 9359943
Query: 651 cttcaagca 659
|||| ||||
Sbjct: 9359942 cttctagca 9359934
Score = 63.9 bits (32), Expect = 7e-07
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 110 agcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatcttcccaa 169
||||||||||||| || |||||||||||| |||| ||||||| ||||||||||||
Sbjct: 9364082 agcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatcttcccac 9364023
Query: 170 tgtggatcatcgaccttgga 189
| |||||||||||| |||||
Sbjct: 9364022 tctggatcatcgactttgga 9364003
Score = 60.0 bits (30), Expect = 1e-05
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 401 attttcagactagtaggagaggccttccgcaatgactggattgcagcagtaaccaattta 460
||||||| |||||||||||| ||||||| || ||||||||||||| || || | ||| |
Sbjct: 9361066 attttcatactagtaggagaagccttcctcatggactggattgcagaagcaatccattca 9361007
Query: 461 tcagacacacttggagcttcttgttc 486
|||| ||| ||||||| ||||||||
Sbjct: 9361006 tcagcaacatttggagcctcttgttc 9360981
Score = 54.0 bits (27), Expect = 6e-04
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 486 caagagtggatatgatttcttcgactgttcctttggagaagcatctgttgatgat 540
|||||| || |||||||||||| |||||| |||||| |||||| ||||||||||
Sbjct: 9360902 caagagaggctatgatttcttctactgtttttttggaaaagcatttgttgatgat 9360848
Score = 40.1 bits (20), Expect = 9.8
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 244 ctttgggtttcgatctttatctaccagtatcgccctacatccct 287
|||||||||||||||| |||| | || ||| ||||| |||||||
Sbjct: 9363844 ctttgggtttcgatctctatccaacaatatagccctgcatccct 9363801
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 129 bits (65), Expect = 1e-26
Identities = 80/85 (94%)
Strand = Plus / Minus
Query: 285 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 344
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9363609 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccattctatattctc 9363550
Query: 345 ggcgcaagcactcaccaacagtttg 369
| || ||||| ||||||||||||||
Sbjct: 9363549 gacgtaagcattcaccaacagtttg 9363525
Score = 81.8 bits (41), Expect = 3e-12
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 591 attgatcaataattccacatatagcaaatggatcagaagcgtccacccttttaagtgatt 650
||||||| ||||||||||||||||||||||||||||| | || ||| ||||||||||||
Sbjct: 9359887 attgatcgataattccacatatagcaaatggatcagatgtatcaacctttttaagtgatt 9359828
Query: 651 cttcaagca 659
|||| ||||
Sbjct: 9359827 cttctagca 9359819
Score = 63.9 bits (32), Expect = 7e-07
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 110 agcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatcttcccaa 169
||||||||||||| || |||||||||||| |||| ||||||| ||||||||||||
Sbjct: 9363967 agcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatcttcccac 9363908
Query: 170 tgtggatcatcgaccttgga 189
| |||||||||||| |||||
Sbjct: 9363907 tctggatcatcgactttgga 9363888
Score = 60.0 bits (30), Expect = 1e-05
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 401 attttcagactagtaggagaggccttccgcaatgactggattgcagcagtaaccaattta 460
||||||| |||||||||||| ||||||| || ||||||||||||| || || | ||| |
Sbjct: 9360951 attttcatactagtaggagaagccttcctcatggactggattgcagaagcaatccattca 9360892
Query: 461 tcagacacacttggagcttcttgttc 486
|||| ||| ||||||| ||||||||
Sbjct: 9360891 tcagcaacatttggagcctcttgttc 9360866
Score = 54.0 bits (27), Expect = 6e-04
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 486 caagagtggatatgatttcttcgactgttcctttggagaagcatctgttgatgat 540
|||||| || |||||||||||| |||||| |||||| |||||| ||||||||||
Sbjct: 9360787 caagagaggctatgatttcttctactgtttttttggaaaagcatttgttgatgat 9360733
Score = 40.1 bits (20), Expect = 9.8
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 244 ctttgggtttcgatctttatctaccagtatcgccctacatccct 287
|||||||||||||||| |||| | || ||| ||||| |||||||
Sbjct: 9363729 ctttgggtttcgatctctatccaacaatatagccctgcatccct 9363686
>emb|AL731744.6 |CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 190718
Score = 129 bits (65), Expect = 1e-26
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 285 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 344
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 75331 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccattctatattctc 75390
Query: 345 ggcgcaagcactcaccaacagtttg 369
| || ||||| ||||||||||||||
Sbjct: 75391 gacgtaagcattcaccaacagtttg 75415
Score = 81.8 bits (41), Expect = 3e-12
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 591 attgatcaataattccacatatagcaaatggatcagaagcgtccacccttttaagtgatt 650
||||||| ||||||||||||||||||||||||||||| | || ||| ||||||||||||
Sbjct: 79053 attgatcgataattccacatatagcaaatggatcagatgtatcaacctttttaagtgatt 79112
Query: 651 cttcaagca 659
|||| ||||
Sbjct: 79113 cttctagca 79121
Score = 63.9 bits (32), Expect = 7e-07
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 110 agcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatcttcccaa 169
||||||||||||| || |||||||||||| |||| ||||||| ||||||||||||
Sbjct: 74973 agcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatcttcccac 75032
Query: 170 tgtggatcatcgaccttgga 189
| |||||||||||| |||||
Sbjct: 75033 tctggatcatcgactttgga 75052
Score = 60.0 bits (30), Expect = 1e-05
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 401 attttcagactagtaggagaggccttccgcaatgactggattgcagcagtaaccaattta 460
||||||| |||||||||||| ||||||| || ||||||||||||| || || | ||| |
Sbjct: 77989 attttcatactagtaggagaagccttcctcatggactggattgcagaagcaatccattca 78048
Query: 461 tcagacacacttggagcttcttgttc 486
|||| ||| ||||||| ||||||||
Sbjct: 78049 tcagcaacatttggagcctcttgttc 78074
Score = 54.0 bits (27), Expect = 6e-04
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 486 caagagtggatatgatttcttcgactgttcctttggagaagcatctgttgatgat 540
|||||| || |||||||||||| |||||| |||||| |||||| ||||||||||
Sbjct: 78153 caagagaggctatgatttcttctactgtttttttggaaaagcatttgttgatgat 78207
Score = 40.1 bits (20), Expect = 9.8
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 244 ctttgggtttcgatctttatctaccagtatcgccctacatccct 287
|||||||||||||||| |||| | || ||| ||||| |||||||
Sbjct: 75211 ctttgggtttcgatctctatccaacaatatagccctgcatccct 75254
>dbj|AP008216.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 121 bits (61), Expect = 3e-24
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 285 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 344
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 22210625 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccatcctatattctc 22210684
Query: 345 ggcgcaagcactcaccaacagtttg 369
| || ||||| ||||||||||||||
Sbjct: 22210685 gacgtaagcattcaccaacagtttg 22210709
Score = 75.8 bits (38), Expect = 2e-10
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 401 attttcagactagtaggagaggccttccgcaatgactggattgcagcagtaaccaattta 460
|||||||||||||||||||| ||||||| || ||||||||||||| || |||| ||| |
Sbjct: 22212252 attttcagactagtaggagaagccttcctcagggactggattgcagaagcaacccattca 22212311
Query: 461 tcagacacacttggagcttcttgttc 486
|||| ||| ||||||| ||||||||
Sbjct: 22212312 tcagcaacatttggagcctcttgttc 22212337
Score = 71.9 bits (36), Expect = 3e-09
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 547 cctattcagagaactacttccttttaaggatggctgttttgaaaattgatcaataattcc 606
||||||||||| ||| || |||| | ||||| |||| ||| ||||||| ||||||||
Sbjct: 22213310 cctattcagagcacttttttctttcagagatggttgttgcgaatattgatcgataattcc 22213369
Query: 607 acatatagcaaatggatcagaagcgtccacccttttaagtgattcttc 654
|||||||||||| |||||||| | || ||| ||||||||||||||||
Sbjct: 22213370 acatatagcaaagggatcagatgtatcaacctttttaagtgattcttc 22213417
Score = 65.9 bits (33), Expect = 2e-07
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 105 atcagagcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatctt 164
|||| ||||||||||||| || |||||||||||| |||| ||||||| ||||||||
Sbjct: 22210262 atcaaagcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatctt 22210321
Query: 165 cccaatgtggatcatcgaccttgga 189
|||| | |||||||||||| |||||
Sbjct: 22210322 cccactctggatcatcgactttgga 22210346
Score = 63.9 bits (32), Expect = 7e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 486 caagagtggatatgatttcttcgactgttcctttggagaagcatctgttgatgatgtcca 545
|||||| || |||||||||||| ||||||| |||||| |||||| |||||||||| ||||
Sbjct: 22212412 caagagaggctatgatttcttctactgttcttttggaaaagcatttgttgatgatttcca 22212471
Score = 48.1 bits (24), Expect = 0.040
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 244 ctttgggtttcgatctttatctaccagtatcgccctacatccct 287
||||||||||||||||||||| | || ||| ||||| |||||||
Sbjct: 22210506 ctttgggtttcgatctttatccaacaatatagccctgcatccct 22210549
>gb|AC060755.9 |AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete
sequence
Length = 172427
Score = 121 bits (61), Expect = 3e-24
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 285 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 344
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 27868 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccatcctatattctc 27927
Query: 345 ggcgcaagcactcaccaacagtttg 369
| || ||||| ||||||||||||||
Sbjct: 27928 gacgtaagcattcaccaacagtttg 27952
Score = 75.8 bits (38), Expect = 2e-10
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 401 attttcagactagtaggagaggccttccgcaatgactggattgcagcagtaaccaattta 460
|||||||||||||||||||| ||||||| || ||||||||||||| || |||| ||| |
Sbjct: 29495 attttcagactagtaggagaagccttcctcagggactggattgcagaagcaacccattca 29554
Query: 461 tcagacacacttggagcttcttgttc 486
|||| ||| ||||||| ||||||||
Sbjct: 29555 tcagcaacatttggagcctcttgttc 29580
Score = 71.9 bits (36), Expect = 3e-09
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 547 cctattcagagaactacttccttttaaggatggctgttttgaaaattgatcaataattcc 606
||||||||||| ||| || |||| | ||||| |||| ||| ||||||| ||||||||
Sbjct: 30553 cctattcagagcacttttttctttcagagatggttgttgcgaatattgatcgataattcc 30612
Query: 607 acatatagcaaatggatcagaagcgtccacccttttaagtgattcttc 654
|||||||||||| |||||||| | || ||| ||||||||||||||||
Sbjct: 30613 acatatagcaaagggatcagatgtatcaacctttttaagtgattcttc 30660
Score = 65.9 bits (33), Expect = 2e-07
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 105 atcagagcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatctt 164
|||| ||||||||||||| || |||||||||||| |||| ||||||| ||||||||
Sbjct: 27505 atcaaagcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatctt 27564
Query: 165 cccaatgtggatcatcgaccttgga 189
|||| | |||||||||||| |||||
Sbjct: 27565 cccactctggatcatcgactttgga 27589
Score = 63.9 bits (32), Expect = 7e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 486 caagagtggatatgatttcttcgactgttcctttggagaagcatctgttgatgatgtcca 545
|||||| || |||||||||||| ||||||| |||||| |||||| |||||||||| ||||
Sbjct: 29655 caagagaggctatgatttcttctactgttcttttggaaaagcatttgttgatgatttcca 29714
Score = 48.1 bits (24), Expect = 0.040
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 244 ctttgggtttcgatctttatctaccagtatcgccctacatccct 287
||||||||||||||||||||| | || ||| ||||| |||||||
Sbjct: 27749 ctttgggtttcgatctttatccaacaatatagccctgcatccct 27792
>gb|AE016959.3 | Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 121 bits (61), Expect = 3e-24
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 285 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 344
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 22222693 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccatcctatattctc 22222752
Query: 345 ggcgcaagcactcaccaacagtttg 369
| || ||||| ||||||||||||||
Sbjct: 22222753 gacgtaagcattcaccaacagtttg 22222777
Score = 75.8 bits (38), Expect = 2e-10
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 401 attttcagactagtaggagaggccttccgcaatgactggattgcagcagtaaccaattta 460
|||||||||||||||||||| ||||||| || ||||||||||||| || |||| ||| |
Sbjct: 22224320 attttcagactagtaggagaagccttcctcagggactggattgcagaagcaacccattca 22224379
Query: 461 tcagacacacttggagcttcttgttc 486
|||| ||| ||||||| ||||||||
Sbjct: 22224380 tcagcaacatttggagcctcttgttc 22224405
Score = 71.9 bits (36), Expect = 3e-09
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 547 cctattcagagaactacttccttttaaggatggctgttttgaaaattgatcaataattcc 606
||||||||||| ||| || |||| | ||||| |||| ||| ||||||| ||||||||
Sbjct: 22225378 cctattcagagcacttttttctttcagagatggttgttgcgaatattgatcgataattcc 22225437
Query: 607 acatatagcaaatggatcagaagcgtccacccttttaagtgattcttc 654
|||||||||||| |||||||| | || ||| ||||||||||||||||
Sbjct: 22225438 acatatagcaaagggatcagatgtatcaacctttttaagtgattcttc 22225485
Score = 65.9 bits (33), Expect = 2e-07
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 105 atcagagcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatctt 164
|||| ||||||||||||| || |||||||||||| |||| ||||||| ||||||||
Sbjct: 22222330 atcaaagcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatctt 22222389
Query: 165 cccaatgtggatcatcgaccttgga 189
|||| | |||||||||||| |||||
Sbjct: 22222390 cccactctggatcatcgactttgga 22222414
Score = 63.9 bits (32), Expect = 7e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 486 caagagtggatatgatttcttcgactgttcctttggagaagcatctgttgatgatgtcca 545
|||||| || |||||||||||| ||||||| |||||| |||||| |||||||||| ||||
Sbjct: 22224480 caagagaggctatgatttcttctactgttcttttggaaaagcatttgttgatgatttcca 22224539
Score = 48.1 bits (24), Expect = 0.040
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 244 ctttgggtttcgatctttatctaccagtatcgccctacatccct 287
||||||||||||||||||||| | || ||| ||||| |||||||
Sbjct: 22222574 ctttgggtttcgatctttatccaacaatatagccctgcatccct 22222617
>emb|AL691487.9 | Human DNA sequence from clone RP11-565A8 on chromosome 1, complete
sequence
Length = 62125
Score = 40.1 bits (20), Expect = 9.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 187 ggagaagtagtttgcaacta 206
||||||||||||||||||||
Sbjct: 56200 ggagaagtagtttgcaacta 56181
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,082,754
Number of Sequences: 3902068
Number of extensions: 6082754
Number of successful extensions: 107526
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107317
Number of HSP's gapped (non-prelim): 191
length of query: 713
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 690
effective length of database: 17,143,297,704
effective search space: 11828875415760
effective search space used: 11828875415760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)