>SGS1_YEAST (P35187) ATP-dependent helicase SGS1 (EC 3.6.1.-) (Helicase TPS1)|
          Length = 1447

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 530 IPQDVLPASTSPTSTPQNVNGNGEXAEETVEHSMVSSPMKNQIDXNIQXEREDEQSPKSD 351
           +P   +PASTS  S P+  NG+      T    M SS ++N    N+     ++    + 
Sbjct: 105 VPMVDIPASTSVVSNPRTPNGSKTHNFNTFRPHMASSLVENDSSRNLGSRNNNKSVIDNS 164

Query: 350 AVG 342
           ++G
Sbjct: 165 SIG 167

>FTSK_LACPL (Q88V72) DNA translocase ftsK|
          Length = 802

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = -3

Query: 554 EQVQSSXXIPQDVLPASTSPTSTPQNVNGNGEXAEETVEHSMVSSPMKNQIDXNIQXERE 375
           +QV+++     +  P ST P S       +G  A ++   ++ SSP     D NI    +
Sbjct: 233 QQVRANQAASTEKQPTSTVPQSAAPAETTSGTSAPDSAASAVTSSP----ADLNITVASD 288

Query: 374 DEQSPKSDAVGAMRLPRE 321
            E SP      A  +  E
Sbjct: 289 REASPIKSPTSAATVDHE 306

>T2H2_HAEPA (P36433) Type II restriction enzyme HpaII (EC 3.1.21.4)|
           (Endonuclease HpaII) (R.HpaII)
          Length = 358

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
 Frame = +1

Query: 52  CPYNTHTYRVGNTYNRACLQHQPXDLWYTRYSINTGXYV-------------PRNRKETR 192
           C +N + Y+V +  N   L  +P D+W  +Y    G  V              +N  E  
Sbjct: 261 CNHNYYEYKVKHFLNDVALGMRPDDVWLGQYDATGGYLVVKEDGELLCYHIYSKNSFEDY 320

Query: 193 SFCMEKVITPT 225
            +C  K  TP+
Sbjct: 321 LYCNTKFDTPS 331


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,825,044
Number of Sequences: 219361
Number of extensions: 1280313
Number of successful extensions: 2635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2634
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)