Clone Name | rbasdf14 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SGS1_YEAST (P35187) ATP-dependent helicase SGS1 (EC 3.6.1.-) (He... | 32 | 1.2 | 2 | FTSK_LACPL (Q88V72) DNA translocase ftsK | 29 | 7.9 | 3 | T2H2_HAEPA (P36433) Type II restriction enzyme HpaII (EC 3.1.21.... | 29 | 7.9 |
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>SGS1_YEAST (P35187) ATP-dependent helicase SGS1 (EC 3.6.1.-) (Helicase TPS1)| Length = 1447 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/63 (26%), Positives = 29/63 (46%) Frame = -3 Query: 530 IPQDVLPASTSPTSTPQNVNGNGEXAEETVEHSMVSSPMKNQIDXNIQXEREDEQSPKSD 351 +P +PASTS S P+ NG+ T M SS ++N N+ ++ + Sbjct: 105 VPMVDIPASTSVVSNPRTPNGSKTHNFNTFRPHMASSLVENDSSRNLGSRNNNKSVIDNS 164 Query: 350 AVG 342 ++G Sbjct: 165 SIG 167
>FTSK_LACPL (Q88V72) DNA translocase ftsK| Length = 802 Score = 29.3 bits (64), Expect = 7.9 Identities = 20/78 (25%), Positives = 32/78 (41%) Frame = -3 Query: 554 EQVQSSXXIPQDVLPASTSPTSTPQNVNGNGEXAEETVEHSMVSSPMKNQIDXNIQXERE 375 +QV+++ + P ST P S +G A ++ ++ SSP D NI + Sbjct: 233 QQVRANQAASTEKQPTSTVPQSAAPAETTSGTSAPDSAASAVTSSP----ADLNITVASD 288 Query: 374 DEQSPKSDAVGAMRLPRE 321 E SP A + E Sbjct: 289 REASPIKSPTSAATVDHE 306
>T2H2_HAEPA (P36433) Type II restriction enzyme HpaII (EC 3.1.21.4)| (Endonuclease HpaII) (R.HpaII) Length = 358 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 13/71 (18%) Frame = +1 Query: 52 CPYNTHTYRVGNTYNRACLQHQPXDLWYTRYSINTGXYV-------------PRNRKETR 192 C +N + Y+V + N L +P D+W +Y G V +N E Sbjct: 261 CNHNYYEYKVKHFLNDVALGMRPDDVWLGQYDATGGYLVVKEDGELLCYHIYSKNSFEDY 320 Query: 193 SFCMEKVITPT 225 +C K TP+ Sbjct: 321 LYCNTKFDTPS 331 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,825,044 Number of Sequences: 219361 Number of extensions: 1280313 Number of successful extensions: 2635 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2595 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2634 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)