>UBP7_HUMAN (Q93009) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing
            protease 7) (Deubiquitinating enzyme 7)
            (Herpesvirus-associated ubiquitin-specific protease)
          Length = 1102

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = -2

Query: 694  EEFAKWKAAFISMNRPEYLQDIDAVSARFQRRDVYGAWEQ---YLGLEHTDTTPKRSYTA 524
            +EF K+K A +   R +Y+ + +            G       +LGL+H +  PKRS   
Sbjct: 1033 KEFEKFKFAIVMTGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKRS--- 1089

Query: 523  NQNRHTY-EKPVKIYN 479
               R+TY EK +KI+N
Sbjct: 1090 ---RYTYLEKAIKIHN 1102

>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 192  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 79
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3735 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3771

>UVRC_VIBF1 (Q5E4C5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 608

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 46  TKALYSLSHCSNAPITGAANKAISLSYNHVYMPLPKY 156
           TKAL S  H  +  +T +  +A+ L +N++   LPKY
Sbjct: 55  TKALVSHIHQVDVTVTHSETEALILEHNYIKQYLPKY 91

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 192  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 79
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3737 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3773


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,851,349
Number of Sequences: 219361
Number of extensions: 2374710
Number of successful extensions: 5355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5355
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)