ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdf09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC007922.13| Homo sapiens chromosome 18, clone RP11-178F10, c... 42 0.52
2gb|AC090244.17| Homo sapiens chromosome 18, clone RP11-758N17, c... 42 0.52
3gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, com... 40 2.0
4emb|AL512599.33| Human DNA sequence from clone RP11-115D7 on chr... 40 2.0
5emb|AL359676.19| Human DNA sequence from clone RP11-735G4 on chr... 40 2.0
6gb|AC027342.5| Homo sapiens chromosome 5 clone CTD-2294O13, comp... 40 2.0
7gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, comple... 40 2.0
8gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome... 38 8.1
9gb|AC007598.7| Homo sapiens chromosome 16 clone RP11-165M1, comp... 38 8.1
10emb|AL672045.11| Human DNA sequence from clone RP11-577O19 on ch... 38 8.1
11emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chr... 38 8.1
12emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chro... 38 8.1
13gb|AC102055.13| Mus musculus chromosome 18, clone RP23-52J5, com... 38 8.1
14gb|AC113387.2| Homo sapiens chromosome 5 clone RP11-351A8, compl... 38 8.1
15dbj|AK075658.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 38 8.1
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
17gb|U53180.1| Caenorhabditis elegans cosmid D1014, complete sequence 38 8.1
18dbj|AK100677.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.1
19gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid p... 38 8.1
20dbj|AK065369.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.1
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.1
22gb|U94786.1|DCU94786 Dianthus caryophyllus S-adenosylmethionine ... 38 8.1
23emb|AL672055.8| Mouse DNA sequence from clone RP23-339K2 on chro... 38 8.1

>gb|AC007922.13| Homo sapiens chromosome 18, clone RP11-178F10, complete sequence
          Length = 140555

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    ctgagagggagatgaaatgaa 90
             |||||||||||||||||||||
Sbjct: 15955 ctgagagggagatgaaatgaa 15935



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>gb|AC090244.17| Homo sapiens chromosome 18, clone RP11-758N17, complete sequence
          Length = 169144

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    ctgagagggagatgaaatgaa 90
             |||||||||||||||||||||
Sbjct: 94193 ctgagagggagatgaaatgaa 94173



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>gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, complete sequence
          Length = 203273

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     aagaaaagctgagagggaga 81
              ||||||||||||||||||||
Sbjct: 180770 aagaaaagctgagagggaga 180751



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>emb|AL512599.33| Human DNA sequence from clone RP11-115D7 on chromosome 1 Contains the
              CAP1 gene for CAP, adenylate cyclase-associated protein 1
              (yeast), the PPT1 gene for palmitoyl-protein thioesterase 1
              (ceroid-lipofuscinosis, neuronal 1, infantile), an
              ornithine decarboxylase antizyme 1 (OAZ1) pseudogene, the
              5' end of the RLF gene for rearranged L-myc fusion sequence
              and a CpG island, complete sequence
          Length = 157750

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 67     aagctgagagggagatgaaatgaa 90
              |||||||||| |||||||||||||
Sbjct: 145970 aagctgagagtgagatgaaatgaa 145947



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>emb|AL359676.19| Human DNA sequence from clone RP11-735G4 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 40599

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    agatgaaatgaaggtaaggt 98
             ||||||||||||||||||||
Sbjct: 14438 agatgaaatgaaggtaaggt 14457



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>gb|AC027342.5| Homo sapiens chromosome 5 clone CTD-2294O13, complete sequence
          Length = 112904

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    ttgtaagaaaagctgagagg 77
             ||||||||||||||||||||
Sbjct: 46384 ttgtaagaaaagctgagagg 46403



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>gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, complete sequence
          Length = 171554

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     aagaaaagctgagagggaga 81
              ||||||||||||||||||||
Sbjct: 169538 aagaaaagctgagagggaga 169557



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>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0005H02, complete sequence
          Length = 144882

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 141   catcttcgtcgggcctgct 159
             |||||||||||||||||||
Sbjct: 53167 catcttcgtcgggcctgct 53185



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>gb|AC007598.7| Homo sapiens chromosome 16 clone RP11-165M1, complete sequence
          Length = 186120

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 61     taagaaaagctgagaggga 79
              |||||||||||||||||||
Sbjct: 105216 taagaaaagctgagaggga 105234



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>emb|AL672045.11| Human DNA sequence from clone RP11-577O19 on chromosome 1 ras-related
             C3 botulinum toxin substrate 1 (rho family, small GTP
             binding protein Rac1) (RAC1) pseudogene, complete sequence
          Length = 180303

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 44    ttttgcactcatttttgtaagaa 66
             |||||||| ||||||||||||||
Sbjct: 73530 ttttgcacccatttttgtaagaa 73552



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>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5'
              end of the Car10 gene for carbonic anhydrase 10 and one CpG
              island, complete sequence
          Length = 203449

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     atttttgtaagaaaagctg 72
              |||||||||||||||||||
Sbjct: 134893 atttttgtaagaaaagctg 134911



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>emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chromosome 13 Contains a
              novel gene and the 3' end of a novel gene (1190005B03Rik),
              complete sequence
          Length = 219200

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     aaagctgagagggagatga 84
              |||||||||||||||||||
Sbjct: 130836 aaagctgagagggagatga 130854



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>gb|AC102055.13| Mus musculus chromosome 18, clone RP23-52J5, complete sequence
          Length = 220747

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     aaaagctgagagggagatg 83
              |||||||||||||||||||
Sbjct: 155182 aaaagctgagagggagatg 155200



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>gb|AC113387.2| Homo sapiens chromosome 5 clone RP11-351A8, complete sequence
          Length = 153428

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 44    ttttgcactcatttttgtaagaa 66
             ||||||||| |||||||||||||
Sbjct: 85095 ttttgcactaatttttgtaagaa 85117



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>dbj|AK075658.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1110050P11
           product:unclassifiable, full insert sequence
          Length = 1413

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 60  gtaagaaaagctgagaggg 78
           |||||||||||||||||||
Sbjct: 753 gtaagaaaagctgagaggg 771



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 141      catcttcgtcgggcctgct 159
                |||||||||||||||||||
Sbjct: 19478890 catcttcgtcgggcctgct 19478908



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>gb|U53180.1| Caenorhabditis elegans cosmid D1014, complete sequence
          Length = 41588

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 51    ctcatttttgtaagaaaagctga 73
             ||||||||| |||||||||||||
Sbjct: 20676 ctcatttttataagaaaagctga 20654



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>dbj|AK100677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113D18, full
            insert sequence
          Length = 2190

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 141  catcttcgtcgggcctgct 159
            |||||||||||||||||||
Sbjct: 1982 catcttcgtcgggcctgct 1964



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>gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid pSOL1, complete
             sequence
          Length = 192000

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 55    tttttgtaagaaaagctga 73
             |||||||||||||||||||
Sbjct: 76318 tttttgtaagaaaagctga 76300



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>dbj|AK065369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023A04, full
            insert sequence
          Length = 3839

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 141  catcttcgtcgggcctgct 159
            |||||||||||||||||||
Sbjct: 3620 catcttcgtcgggcctgct 3602



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 141      catcttcgtcgggcctgct 159
                |||||||||||||||||||
Sbjct: 19638064 catcttcgtcgggcctgct 19638082



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>gb|U94786.1|DCU94786 Dianthus caryophyllus S-adenosylmethionine decarboxylase (gcsdc9)
            gene, complete cds
          Length = 4311

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   tgagagggagatgaaatga 89
            |||||||||||||||||||
Sbjct: 1776 tgagagggagatgaaatga 1758



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>emb|AL672055.8| Mouse DNA sequence from clone RP23-339K2 on chromosome X, complete
             sequence
          Length = 232188

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    gtaagaaaagctgagaggg 78
             |||||||||||||||||||
Sbjct: 16326 gtaagaaaagctgagaggg 16308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,187,502
Number of Sequences: 3902068
Number of extensions: 1187502
Number of successful extensions: 86582
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86503
Number of HSP's gapped (non-prelim): 79
length of query: 166
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 144
effective length of database: 17,147,199,772
effective search space: 2469196767168
effective search space used: 2469196767168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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