Clone Name | rbasdf09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC007922.13| Homo sapiens chromosome 18, clone RP11-178F10, complete sequence Length = 140555 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 ctgagagggagatgaaatgaa 90 ||||||||||||||||||||| Sbjct: 15955 ctgagagggagatgaaatgaa 15935
>gb|AC090244.17| Homo sapiens chromosome 18, clone RP11-758N17, complete sequence Length = 169144 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 ctgagagggagatgaaatgaa 90 ||||||||||||||||||||| Sbjct: 94193 ctgagagggagatgaaatgaa 94173
>gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, complete sequence Length = 203273 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aagaaaagctgagagggaga 81 |||||||||||||||||||| Sbjct: 180770 aagaaaagctgagagggaga 180751
>emb|AL512599.33| Human DNA sequence from clone RP11-115D7 on chromosome 1 Contains the CAP1 gene for CAP, adenylate cyclase-associated protein 1 (yeast), the PPT1 gene for palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile), an ornithine decarboxylase antizyme 1 (OAZ1) pseudogene, the 5' end of the RLF gene for rearranged L-myc fusion sequence and a CpG island, complete sequence Length = 157750 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 aagctgagagggagatgaaatgaa 90 |||||||||| ||||||||||||| Sbjct: 145970 aagctgagagtgagatgaaatgaa 145947
>emb|AL359676.19| Human DNA sequence from clone RP11-735G4 on chromosome 6 Contains part of a novel gene, complete sequence Length = 40599 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 agatgaaatgaaggtaaggt 98 |||||||||||||||||||| Sbjct: 14438 agatgaaatgaaggtaaggt 14457
>gb|AC027342.5| Homo sapiens chromosome 5 clone CTD-2294O13, complete sequence Length = 112904 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ttgtaagaaaagctgagagg 77 |||||||||||||||||||| Sbjct: 46384 ttgtaagaaaagctgagagg 46403
>gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, complete sequence Length = 171554 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 aagaaaagctgagagggaga 81 |||||||||||||||||||| Sbjct: 169538 aagaaaagctgagagggaga 169557
>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0005H02, complete sequence Length = 144882 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 141 catcttcgtcgggcctgct 159 ||||||||||||||||||| Sbjct: 53167 catcttcgtcgggcctgct 53185
>gb|AC007598.7| Homo sapiens chromosome 16 clone RP11-165M1, complete sequence Length = 186120 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 taagaaaagctgagaggga 79 ||||||||||||||||||| Sbjct: 105216 taagaaaagctgagaggga 105234
>emb|AL672045.11| Human DNA sequence from clone RP11-577O19 on chromosome 1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) (RAC1) pseudogene, complete sequence Length = 180303 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 44 ttttgcactcatttttgtaagaa 66 |||||||| |||||||||||||| Sbjct: 73530 ttttgcacccatttttgtaagaa 73552
>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5' end of the Car10 gene for carbonic anhydrase 10 and one CpG island, complete sequence Length = 203449 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 atttttgtaagaaaagctg 72 ||||||||||||||||||| Sbjct: 134893 atttttgtaagaaaagctg 134911
>emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chromosome 13 Contains a novel gene and the 3' end of a novel gene (1190005B03Rik), complete sequence Length = 219200 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagctgagagggagatga 84 ||||||||||||||||||| Sbjct: 130836 aaagctgagagggagatga 130854
>gb|AC102055.13| Mus musculus chromosome 18, clone RP23-52J5, complete sequence Length = 220747 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aaaagctgagagggagatg 83 ||||||||||||||||||| Sbjct: 155182 aaaagctgagagggagatg 155200
>gb|AC113387.2| Homo sapiens chromosome 5 clone RP11-351A8, complete sequence Length = 153428 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 44 ttttgcactcatttttgtaagaa 66 ||||||||| ||||||||||||| Sbjct: 85095 ttttgcactaatttttgtaagaa 85117
>dbj|AK075658.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110050P11 product:unclassifiable, full insert sequence Length = 1413 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 gtaagaaaagctgagaggg 78 ||||||||||||||||||| Sbjct: 753 gtaagaaaagctgagaggg 771
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 141 catcttcgtcgggcctgct 159 ||||||||||||||||||| Sbjct: 19478890 catcttcgtcgggcctgct 19478908
>gb|U53180.1| Caenorhabditis elegans cosmid D1014, complete sequence Length = 41588 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 51 ctcatttttgtaagaaaagctga 73 ||||||||| ||||||||||||| Sbjct: 20676 ctcatttttataagaaaagctga 20654
>dbj|AK100677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113D18, full insert sequence Length = 2190 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 141 catcttcgtcgggcctgct 159 ||||||||||||||||||| Sbjct: 1982 catcttcgtcgggcctgct 1964
>gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid pSOL1, complete sequence Length = 192000 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 tttttgtaagaaaagctga 73 ||||||||||||||||||| Sbjct: 76318 tttttgtaagaaaagctga 76300
>dbj|AK065369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023A04, full insert sequence Length = 3839 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 141 catcttcgtcgggcctgct 159 ||||||||||||||||||| Sbjct: 3620 catcttcgtcgggcctgct 3602
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 141 catcttcgtcgggcctgct 159 ||||||||||||||||||| Sbjct: 19638064 catcttcgtcgggcctgct 19638082
>gb|U94786.1|DCU94786 Dianthus caryophyllus S-adenosylmethionine decarboxylase (gcsdc9) gene, complete cds Length = 4311 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 tgagagggagatgaaatga 89 ||||||||||||||||||| Sbjct: 1776 tgagagggagatgaaatga 1758
>emb|AL672055.8| Mouse DNA sequence from clone RP23-339K2 on chromosome X, complete sequence Length = 232188 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 gtaagaaaagctgagaggg 78 ||||||||||||||||||| Sbjct: 16326 gtaagaaaagctgagaggg 16308 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,187,502 Number of Sequences: 3902068 Number of extensions: 1187502 Number of successful extensions: 86582 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86503 Number of HSP's gapped (non-prelim): 79 length of query: 166 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 144 effective length of database: 17,147,199,772 effective search space: 2469196767168 effective search space used: 2469196767168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)