ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdf07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 206 6e-50
2dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic D... 206 6e-50
3dbj|AK102835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 6e-50
4gb|AY107126.1| Zea mays PCO066908 mRNA sequence 107 4e-20
5gb|BT018704.1| Zea mays clone EL01N0515D08.d mRNA sequence 101 3e-18
6ref|XM_541568.2| PREDICTED: Canis familiaris similar to zinc fin... 46 0.14
7gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 46 0.14
8ref|XM_761550.1| Theileria parva strain Muguga chromosome 1 cell... 44 0.56
9gb|AF409102.1| Trichoplusia ni 3-dehydrecdysone 3b-reductase mRN... 42 2.2
10dbj|AB158498.1| Bombyx mori gene for trehalase, 5' upstream region 42 2.2
11gb|DQ141103.1| Bombyx mori Dscam gene, partial sequence 40 8.7
12gb|AC084196.1| Caenorhabditis elegans cosmid Y55D5A, complete se... 40 8.7
13emb|AL451139.40| Human DNA sequence from clone RP11-569G9 on chr... 40 8.7
14emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 i... 40 8.7
15emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.7
16dbj|AK097368.1| Homo sapiens cDNA FLJ40049 fis, clone SYNOV2001708 40 8.7
17gb|AF494090.1| Nicotiana sylvestris gibberellin 3-oxidase 2 (GA3... 40 8.7
18gb|DQ311393.1| Bombyx mori Prpk-binding protein mRNA, complete cds 40 8.7
19gb|AF303741.1|AF303741 Chilo iridescent virus complete genome 40 8.7
20gb|AC010902.4|AC010902 Homo sapiens clone RP11-549J7, complete s... 40 8.7
21gb|AF226688.1|AF226688 Bombyx mori fibroin heavy chain Fib-H (fi... 40 8.7
22emb|BX005106.5| Zebrafish DNA sequence from clone DKEY-188I13, c... 40 8.7
23gb|U07847.1|BMAMYNLTRR Bombyx mori truncated alpha-amylase (amy)... 40 8.7
24dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, co... 40 8.7
25dbj|AB002270.1| Bombyx mori L1Bm DNA, non-LTR retrotransposon 40 8.7
26emb|AL732544.12| Zebrafish DNA sequence from clone BUSM1-6I1 in ... 40 8.7
27emb|CT009654.2| Medicago truncatula chromosome 5 clone mth2-17c1... 40 8.7
28dbj|AB090307.1| Bombyx mori Bmfkbp13, Bmhepa, Bmhig, Bm6922, Bml... 40 8.7
29dbj|AB079861.1| Bombyx mori Bmhig gene for hypothetical protein,... 40 8.7
30emb|AL928803.6| Mouse DNA sequence from clone RP23-319N14 on chr... 40 8.7
31gb|AY353886.1| Rabies virus isolate 2072f glycoprotein (G) mRNA,... 40 8.7
32emb|AL845478.6| Mouse DNA sequence from clone RP23-186J18 on chr... 40 8.7
33gb|DQ243319.1| Bombyx mori chromosome 05 microsatellite S0514-R ... 40 8.7
34gb|DQ243067.1| Bombyx mori chromosome 11 microsatellite S1128-F ... 40 8.7
35gb|DQ242762.1| Bombyx mori chromosome 12 microsatellite S1207-F ... 40 8.7
36dbj|AB032198.1| Nicotiana tabacum mRNA for gibberellin 3beta-hyd... 40 8.7

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  206 bits (104), Expect = 6e-50
 Identities = 248/296 (83%)
 Strand = Plus / Minus

                                                                            
Query: 219      cccatggcaaccactgggatcctgactaggtggcgccggtcacccttcatcgtgatctcg 278
                ||||| || ||||||||||| || || ||||| |  ||||| || ||||| |||||||| 
Sbjct: 28924918 cccatagctaccactgggattctcacaaggtgacctcggtcccctttcatggtgatctct 28924859

                                                                            
Query: 279      ccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtgatctctctagat 338
                || ||||||||||| || ||||| | ||| | |||||||||| | || |||||||| |||
Sbjct: 28924858 ccaaaactgtaggtgccagtcactgacctggccgtgagggtcgccgttatctctctcgat 28924799

                                                                            
Query: 339      gacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatctccggcgacatc 398
                |  || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 28924798 gcgccggggagcactgtcagcgctggaggtgagacctccagcgcgatctccggcgacatt 28924739

                                                                            
Query: 399      ctggtcatgatggtgtaggtttctgcctcatcagccacgttcgtgactgtccgcttcacg 458
                || |||||||||||||||||||| |||||  | |||||| | || |||||||||||||| 
Sbjct: 28924738 cttgtcatgatggtgtaggtttcggcctcggcggccacgcttgtaactgtccgcttcacc 28924679

                                                                        
Query: 459      gtctgcgtccctttgagctgtgacaccgtgatcgaggggatgttcagatcataggg 514
                |||||||| ||| | ||||| || |  ||||| ||||||||||| |||||||||||
Sbjct: 28924678 gtctgcgtgcctctaagctgggagatggtgattgaggggatgttgagatcataggg 28924623



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                            
Query: 552      gttatgtttgatacttcacttggatcgacgtcagggatcgagcacaagaatgtgatgtag 611
                ||||||||||||||||||||  | || ||||| |||||||| ||||| ||||||||||| 
Sbjct: 28924582 gttatgtttgatacttcactgtgttccacgtcggggatcgaacacaaaaatgtgatgtaa 28924523

                          
Query: 612      tcctgatgag 621
                || |||||||
Sbjct: 28924522 tcttgatgag 28924513



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>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0468G03
          Length = 143918

 Score =  206 bits (104), Expect = 6e-50
 Identities = 248/296 (83%)
 Strand = Plus / Minus

                                                                         
Query: 219   cccatggcaaccactgggatcctgactaggtggcgccggtcacccttcatcgtgatctcg 278
             ||||| || ||||||||||| || || ||||| |  ||||| || ||||| |||||||| 
Sbjct: 74962 cccatagctaccactgggattctcacaaggtgacctcggtcccctttcatggtgatctct 74903

                                                                         
Query: 279   ccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtgatctctctagat 338
             || ||||||||||| || ||||| | ||| | |||||||||| | || |||||||| |||
Sbjct: 74902 ccaaaactgtaggtgccagtcactgacctggccgtgagggtcgccgttatctctctcgat 74843

                                                                         
Query: 339   gacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatctccggcgacatc 398
             |  || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 74842 gcgccggggagcactgtcagcgctggaggtgagacctccagcgcgatctccggcgacatt 74783

                                                                         
Query: 399   ctggtcatgatggtgtaggtttctgcctcatcagccacgttcgtgactgtccgcttcacg 458
             || |||||||||||||||||||| |||||  | |||||| | || |||||||||||||| 
Sbjct: 74782 cttgtcatgatggtgtaggtttcggcctcggcggccacgcttgtaactgtccgcttcacc 74723

                                                                     
Query: 459   gtctgcgtccctttgagctgtgacaccgtgatcgaggggatgttcagatcataggg 514
             |||||||| ||| | ||||| || |  ||||| ||||||||||| |||||||||||
Sbjct: 74722 gtctgcgtgcctctaagctgggagatggtgattgaggggatgttgagatcataggg 74667



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 552   gttatgtttgatacttcacttggatcgacgtcagggatcgagcacaagaatgtgatgtag 611
             ||||||||||||||||||||  | || ||||| |||||||| ||||| ||||||||||| 
Sbjct: 74626 gttatgtttgatacttcactgtgttccacgtcggggatcgaacacaaaaatgtgatgtaa 74567

                       
Query: 612   tcctgatgag 621
             || |||||||
Sbjct: 74566 tcttgatgag 74557



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>dbj|AK102835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109K01, full
            insert sequence
          Length = 2984

 Score =  206 bits (104), Expect = 6e-50
 Identities = 248/296 (83%)
 Strand = Plus / Minus

                                                                        
Query: 219  cccatggcaaccactgggatcctgactaggtggcgccggtcacccttcatcgtgatctcg 278
            ||||| || ||||||||||| || || ||||| |  ||||| || ||||| |||||||| 
Sbjct: 2766 cccatagctaccactgggattctcacaaggtgacctcggtcccctttcatggtgatctct 2707

                                                                        
Query: 279  ccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtgatctctctagat 338
            || ||||||||||| || ||||| | ||| | |||||||||| | || |||||||| |||
Sbjct: 2706 ccaaaactgtaggtgccagtcactgacctggccgtgagggtcgccgttatctctctcgat 2647

                                                                        
Query: 339  gacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatctccggcgacatc 398
            |  || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 2646 gcgccggggagcactgtcagcgctggaggtgagacctccagcgcgatctccggcgacatt 2587

                                                                        
Query: 399  ctggtcatgatggtgtaggtttctgcctcatcagccacgttcgtgactgtccgcttcacg 458
            || |||||||||||||||||||| |||||  | |||||| | || |||||||||||||| 
Sbjct: 2586 cttgtcatgatggtgtaggtttcggcctcggcggccacgcttgtaactgtccgcttcacc 2527

                                                                    
Query: 459  gtctgcgtccctttgagctgtgacaccgtgatcgaggggatgttcagatcataggg 514
            |||||||| ||| | ||||| || |  ||||| ||||||||||| |||||||||||
Sbjct: 2526 gtctgcgtgcctctaagctgggagatggtgattgaggggatgttgagatcataggg 2471



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 552  gttatgtttgatacttcacttggatcgacgtcagggatcgagcacaagaatgtgatgtag 611
            ||||||||||||||||||||  | || ||||| |||||||| ||||| ||||||||||| 
Sbjct: 2430 gttatgtttgatacttcactgtgttccacgtcggggatcgaacacaaaaatgtgatgtaa 2371

                                       
Query: 612  tcctgatgagttgcatctagaacaagg 638
            || |||||||||||||| |||||||||
Sbjct: 2370 tcttgatgagttgcatccagaacaagg 2344



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>gb|AY107126.1| Zea mays PCO066908 mRNA sequence
          Length = 829

 Score =  107 bits (54), Expect = 4e-20
 Identities = 201/250 (80%)
 Strand = Plus / Minus

                                                                       
Query: 208 cctatttgaaccccatggcaaccactgggatcctgactaggtggcgccggtcacccttca 267
           |||| ||||| ||||| || || |||||||| ||||| ||||| |  |||||||| ||||
Sbjct: 816 cctacttgaatcccatagctacgactgggattctgacgaggtgaccgcggtcacctttca 757

                                                                       
Query: 268 tcgtgatctcgccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtga 327
           | |  ||||| |||||||||||||| |||||||| | ||||| ||| |||||||| || |
Sbjct: 756 tggcaatctcaccgaaactgtaggtgccggtcacggacctcgccgtcagggtcacagtta 697

                                                                       
Query: 328 tctctctagatgacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatct 387
           ||||||  ||||  || |||| ||| |||| ||| ||||| |  || ||||| |||| ||
Sbjct: 696 tctctcgtgatgctccggggaccacggtcaccgccggaggcgtcacctccagggcgacct 637

                                                                       
Query: 388 ccggcgacatcctggtcatgatggtgtaggtttctgcctcatcagccacgttcgtgactg 447
           | |||| |||||| ||||||||||||||||| || |  || || | |||| ||||||| |
Sbjct: 636 ctggcggcatccttgtcatgatggtgtaggtctcggtttcgtcggacacgctcgtgacgg 577

                     
Query: 448 tccgcttcac 457
           ||||||||||
Sbjct: 576 tccgcttcac 567



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 546 gagccggttatgtttgatacttcacttggatcgacgtcagggatcgagcacaagaatgtg 605
           ||||||| ||||||||||||||| ||  | | |||||| |||||||||||||  || |||
Sbjct: 478 gagccggctatgtttgatacttcgctctggttgacgtcggggatcgagcacagaaacgtg 419

                                            
Query: 606 atgtagtcctgatgagttgcatctagaacaagg 638
           |||||||| | |||  |||| ||||||||||||
Sbjct: 418 atgtagtcttcatggcttgcgtctagaacaagg 386



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>gb|BT018704.1| Zea mays clone EL01N0515D08.d mRNA sequence
          Length = 1950

 Score =  101 bits (51), Expect = 3e-18
 Identities = 171/211 (81%)
 Strand = Plus / Minus

                                                                        
Query: 208  cctatttgaaccccatggcaaccactgggatcctgactaggtggcgccggtcacccttca 267
            |||| ||||| ||||| || ||||||||||| ||||| | |||||  ||||| || ||||
Sbjct: 1689 cctacttgaatcccatagctaccactgggattctgacgatgtggccgcggtcgcctttca 1630

                                                                        
Query: 268  tcgtgatctcgccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtga 327
            | | |||||| |||||||||||||| |||||||| | ||||| ||| |||||||| |  |
Sbjct: 1629 tggcgatctctccgaaactgtaggtgccggtcacggacctcgccgtcagggtcacagcta 1570

                                                                        
Query: 328  tctctctagatgacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatct 387
             |||||| ||||  || || |||||||||| ||| ||||| |  || ||||| || | ||
Sbjct: 1569 cctctctcgatgctccgggcagcaccgtcaccgccggaggcgtcacctccagggcaacct 1510

                                           
Query: 388  ccggcgacatcctggtcatgatggtgtaggt 418
            |||||| ||| || |||||||||||||||||
Sbjct: 1509 ccggcggcattctcgtcatgatggtgtaggt 1479



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                        
Query: 578  gacgtcagggatcgagcacaagaatgtgatgtagtcctgatgagttgcatctagaacaag 637
            ||||||||||||||||||||| |||| |||||| || |  || |||||||||||||||||
Sbjct: 1316 gacgtcagggatcgagcacaaaaatgcgatgtactcttcgtgggttgcatctagaacaag 1257



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>ref|XM_541568.2| PREDICTED: Canis familiaris similar to zinc finger protein 342
            (LOC484453), mRNA
          Length = 1496

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 527  ctggctggggctgcagcgtgagc 549
            |||||||||||||||||||||||
Sbjct: 1012 ctggctggggctgcagcgtgagc 990



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 380     cgcgatctccggcgacatcctgg 402
               |||||||||||||||||||||||
Sbjct: 2624361 cgcgatctccggcgacatcctgg 2624339



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>ref|XM_761550.1| Theileria parva strain Muguga chromosome 1 cell division protein
           FtsH (TP01_1122) partial mRNA
          Length = 2421

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 501 ttcagatcatagggtccctgtc 522
           ||||||||||||||||||||||
Sbjct: 12  ttcagatcatagggtccctgtc 33



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>gb|AF409102.1| Trichoplusia ni 3-dehydrecdysone 3b-reductase mRNA, complete cds
          Length = 1055

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 433 ccacgttcgtgactgtccgct 453
           |||||||||||||||||||||
Sbjct: 651 ccacgttcgtgactgtccgct 631



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>dbj|AB158498.1| Bombyx mori gene for trehalase, 5' upstream region
          Length = 5005

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 288 taggtaccggtcaccgtcctcgtcg 312
           |||| ||||||||||||||||||||
Sbjct: 316 taggcaccggtcaccgtcctcgtcg 292



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>gb|DQ141103.1| Bombyx mori Dscam gene, partial sequence
          Length = 57601

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   accggtcaccgtcctcgtcg 312
             ||||||||||||||||||||
Sbjct: 35496 accggtcaccgtcctcgtcg 35477



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>gb|AC084196.1| Caenorhabditis elegans cosmid Y55D5A, complete sequence
          Length = 86523

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   ttcctaccaaactacaaaat 159
             ||||||||||||||||||||
Sbjct: 64582 ttcctaccaaactacaaaat 64563



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>emb|AL451139.40| Human DNA sequence from clone RP11-569G9 on chromosome 1 Contains the
             3' end of a novel gene (DKFZP434L0117), the SH3BGRL3 gene
             for SH3 domain binding glutamic acid-rich protein like 3,
             the gene for socius (SOC), the CDW52 gene for CDW52
             antigen (CAMPATH-1 antigen), the AIM1L gene for absent in
             melanoma 1-like and a novel gene,, complete sequence
          Length = 145736

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   ctcttctggctggggctgca 541
             ||||||||||||||||||||
Sbjct: 54645 ctcttctggctggggctgca 54664



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>emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 in linkage group 12,
              complete sequence
          Length = 168372

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ccaaactacaaaatattaca 165
              ||||||||||||||||||||
Sbjct: 127710 ccaaactacaaaatattaca 127729



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>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16
          Length = 348942

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   cgcgatctccggcgacatcc 399
             ||||||||||||||||||||
Sbjct: 44591 cgcgatctccggcgacatcc 44572



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>dbj|AK097368.1| Homo sapiens cDNA FLJ40049 fis, clone SYNOV2001708
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 522 ctcttctggctggggctgca 541
           ||||||||||||||||||||
Sbjct: 120 ctcttctggctggggctgca 101



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>gb|AF494090.1| Nicotiana sylvestris gibberellin 3-oxidase 2 (GA3ox2) mRNA, complete
            cds
          Length = 1285

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   catataaataggctacagaa 61
            ||||||||||||||||||||
Sbjct: 1036 catataaataggctacagaa 1017



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>gb|DQ311393.1| Bombyx mori Prpk-binding protein mRNA, complete cds
          Length = 1264

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 accggtcaccgtcctcgtcg 312
           ||||||||||||||||||||
Sbjct: 922 accggtcaccgtcctcgtcg 903



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>gb|AF303741.1|AF303741 Chilo iridescent virus complete genome
          Length = 212482

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    cgtatttttacatcctgggg 86
             ||||||||||||||||||||
Sbjct: 53023 cgtatttttacatcctgggg 53004



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>gb|AC010902.4|AC010902 Homo sapiens clone RP11-549J7, complete sequence
          Length = 114169

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tacaaaatattacaacactc 171
             ||||||||||||||||||||
Sbjct: 54250 tacaaaatattacaacactc 54231



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>gb|AF226688.1|AF226688 Bombyx mori fibroin heavy chain Fib-H (fib-H) gene, complete cds
          Length = 80009

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   accggtcaccgtcctcgtcg 312
             ||||||||||||||||||||
Sbjct: 30424 accggtcaccgtcctcgtcg 30405



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>emb|BX005106.5| Zebrafish DNA sequence from clone DKEY-188I13, complete sequence
          Length = 216863

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     aacacagacaatacatcatt 115
              ||||||||||||||||||||
Sbjct: 185928 aacacagacaatacatcatt 185947



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>gb|U07847.1|BMAMYNLTRR Bombyx mori truncated alpha-amylase (amy) gene, complete cds; and
            retrotransposon reverse transcriptase gene, complete cds
          Length = 8970

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  accggtcaccgtcctcgtcg 312
            ||||||||||||||||||||
Sbjct: 8589 accggtcaccgtcctcgtcg 8608



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>dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, complete sequence
          Length = 124898

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   accggtcaccgtcctcgtcg 312
             ||||||||||||||||||||
Sbjct: 66365 accggtcaccgtcctcgtcg 66346



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   accggtcaccgtcctcgtcg 312
             ||||||||||||||||||||
Sbjct: 41972 accggtcaccgtcctcgtcg 41953



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   accggtcaccgtcctcgtcg 312
             ||||||||||||||||||||
Sbjct: 26355 accggtcaccgtcctcgtcg 26374



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>dbj|AB002270.1| Bombyx mori L1Bm DNA, non-LTR retrotransposon
          Length = 5636

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 accggtcaccgtcctcgtcg 312
           ||||||||||||||||||||
Sbjct: 363 accggtcaccgtcctcgtcg 344



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>emb|AL732544.12| Zebrafish DNA sequence from clone BUSM1-6I1 in linkage group 7,
             complete sequence
          Length = 135141

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 181   gagcatcataagagaacaatacac 204
             ||||||||||||||||| ||||||
Sbjct: 90668 gagcatcataagagaactatacac 90645



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>emb|CT009654.2| Medicago truncatula chromosome 5 clone mth2-17c15, COMPLETE SEQUENCE
          Length = 126536

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   cataagagaacaatacacga 206
             ||||||||||||||||||||
Sbjct: 59331 cataagagaacaatacacga 59312



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>dbj|AB090307.1| Bombyx mori Bmfkbp13, Bmhepa, Bmhig, Bm6922, Bmlap, Bmprojectin,
             Bmkettin, Bmtitin1 genes, partial and complete cds
          Length = 160000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   accggtcaccgtcctcgtcg 312
             ||||||||||||||||||||
Sbjct: 36543 accggtcaccgtcctcgtcg 36524



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>dbj|AB079861.1| Bombyx mori Bmhig gene for hypothetical protein, complete cds
          Length = 13140

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  accggtcaccgtcctcgtcg 312
            ||||||||||||||||||||
Sbjct: 7923 accggtcaccgtcctcgtcg 7942



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>emb|AL928803.6| Mouse DNA sequence from clone RP23-319N14 on chromosome 2, complete
             sequence
          Length = 109092

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    caccatcataacacagacaa 106
             ||||||||||||||||||||
Sbjct: 93861 caccatcataacacagacaa 93880



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>gb|AY353886.1| Rabies virus isolate 2072f glycoprotein (G) mRNA, partial cds
          Length = 854

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 tggtgtaggtttctgcctca 428
           ||||||||||||||||||||
Sbjct: 186 tggtgtaggtttctgcctca 167



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>emb|AL845478.6| Mouse DNA sequence from clone RP23-186J18 on chromosome 2, complete
             sequence
          Length = 222451

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   ctcctcagctcagagcatca 188
             ||||||||||||||||||||
Sbjct: 41617 ctcctcagctcagagcatca 41636



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>gb|DQ243319.1| Bombyx mori chromosome 05 microsatellite S0514-R sequence
          Length = 716

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 accggtcaccgtcctcgtcg 312
           ||||||||||||||||||||
Sbjct: 573 accggtcaccgtcctcgtcg 592



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>gb|DQ243067.1| Bombyx mori chromosome 11 microsatellite S1128-F sequence
          Length = 501

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 accggtcaccgtcctcgtcg 312
           ||||||||||||||||||||
Sbjct: 328 accggtcaccgtcctcgtcg 347



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>gb|DQ242762.1| Bombyx mori chromosome 12 microsatellite S1207-F sequence
          Length = 973

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 accggtcaccgtcctcgtcg 312
           ||||||||||||||||||||
Sbjct: 264 accggtcaccgtcctcgtcg 245



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>dbj|AB032198.1| Nicotiana tabacum mRNA for gibberellin 3beta-hydroxylase, complete
           cds
          Length = 1116

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  catataaataggctacagaa 61
           ||||||||||||||||||||
Sbjct: 913 catataaataggctacagaa 894


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,400,575
Number of Sequences: 3902068
Number of extensions: 4400575
Number of successful extensions: 79446
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79285
Number of HSP's gapped (non-prelim): 160
length of query: 638
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 615
effective length of database: 17,143,297,704
effective search space: 10543128087960
effective search space used: 10543128087960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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