Clone Name | rbasdf07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 206 bits (104), Expect = 6e-50 Identities = 248/296 (83%) Strand = Plus / Minus Query: 219 cccatggcaaccactgggatcctgactaggtggcgccggtcacccttcatcgtgatctcg 278 ||||| || ||||||||||| || || ||||| | ||||| || ||||| |||||||| Sbjct: 28924918 cccatagctaccactgggattctcacaaggtgacctcggtcccctttcatggtgatctct 28924859 Query: 279 ccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtgatctctctagat 338 || ||||||||||| || ||||| | ||| | |||||||||| | || |||||||| ||| Sbjct: 28924858 ccaaaactgtaggtgccagtcactgacctggccgtgagggtcgccgttatctctctcgat 28924799 Query: 339 gacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatctccggcgacatc 398 | || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 28924798 gcgccggggagcactgtcagcgctggaggtgagacctccagcgcgatctccggcgacatt 28924739 Query: 399 ctggtcatgatggtgtaggtttctgcctcatcagccacgttcgtgactgtccgcttcacg 458 || |||||||||||||||||||| ||||| | |||||| | || |||||||||||||| Sbjct: 28924738 cttgtcatgatggtgtaggtttcggcctcggcggccacgcttgtaactgtccgcttcacc 28924679 Query: 459 gtctgcgtccctttgagctgtgacaccgtgatcgaggggatgttcagatcataggg 514 |||||||| ||| | ||||| || | ||||| ||||||||||| ||||||||||| Sbjct: 28924678 gtctgcgtgcctctaagctgggagatggtgattgaggggatgttgagatcataggg 28924623 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 552 gttatgtttgatacttcacttggatcgacgtcagggatcgagcacaagaatgtgatgtag 611 |||||||||||||||||||| | || ||||| |||||||| ||||| ||||||||||| Sbjct: 28924582 gttatgtttgatacttcactgtgttccacgtcggggatcgaacacaaaaatgtgatgtaa 28924523 Query: 612 tcctgatgag 621 || ||||||| Sbjct: 28924522 tcttgatgag 28924513
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 206 bits (104), Expect = 6e-50 Identities = 248/296 (83%) Strand = Plus / Minus Query: 219 cccatggcaaccactgggatcctgactaggtggcgccggtcacccttcatcgtgatctcg 278 ||||| || ||||||||||| || || ||||| | ||||| || ||||| |||||||| Sbjct: 74962 cccatagctaccactgggattctcacaaggtgacctcggtcccctttcatggtgatctct 74903 Query: 279 ccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtgatctctctagat 338 || ||||||||||| || ||||| | ||| | |||||||||| | || |||||||| ||| Sbjct: 74902 ccaaaactgtaggtgccagtcactgacctggccgtgagggtcgccgttatctctctcgat 74843 Query: 339 gacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatctccggcgacatc 398 | || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 74842 gcgccggggagcactgtcagcgctggaggtgagacctccagcgcgatctccggcgacatt 74783 Query: 399 ctggtcatgatggtgtaggtttctgcctcatcagccacgttcgtgactgtccgcttcacg 458 || |||||||||||||||||||| ||||| | |||||| | || |||||||||||||| Sbjct: 74782 cttgtcatgatggtgtaggtttcggcctcggcggccacgcttgtaactgtccgcttcacc 74723 Query: 459 gtctgcgtccctttgagctgtgacaccgtgatcgaggggatgttcagatcataggg 514 |||||||| ||| | ||||| || | ||||| ||||||||||| ||||||||||| Sbjct: 74722 gtctgcgtgcctctaagctgggagatggtgattgaggggatgttgagatcataggg 74667 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 552 gttatgtttgatacttcacttggatcgacgtcagggatcgagcacaagaatgtgatgtag 611 |||||||||||||||||||| | || ||||| |||||||| ||||| ||||||||||| Sbjct: 74626 gttatgtttgatacttcactgtgttccacgtcggggatcgaacacaaaaatgtgatgtaa 74567 Query: 612 tcctgatgag 621 || ||||||| Sbjct: 74566 tcttgatgag 74557
>dbj|AK102835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109K01, full insert sequence Length = 2984 Score = 206 bits (104), Expect = 6e-50 Identities = 248/296 (83%) Strand = Plus / Minus Query: 219 cccatggcaaccactgggatcctgactaggtggcgccggtcacccttcatcgtgatctcg 278 ||||| || ||||||||||| || || ||||| | ||||| || ||||| |||||||| Sbjct: 2766 cccatagctaccactgggattctcacaaggtgacctcggtcccctttcatggtgatctct 2707 Query: 279 ccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtgatctctctagat 338 || ||||||||||| || ||||| | ||| | |||||||||| | || |||||||| ||| Sbjct: 2706 ccaaaactgtaggtgccagtcactgacctggccgtgagggtcgccgttatctctctcgat 2647 Query: 339 gacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatctccggcgacatc 398 | || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 2646 gcgccggggagcactgtcagcgctggaggtgagacctccagcgcgatctccggcgacatt 2587 Query: 399 ctggtcatgatggtgtaggtttctgcctcatcagccacgttcgtgactgtccgcttcacg 458 || |||||||||||||||||||| ||||| | |||||| | || |||||||||||||| Sbjct: 2586 cttgtcatgatggtgtaggtttcggcctcggcggccacgcttgtaactgtccgcttcacc 2527 Query: 459 gtctgcgtccctttgagctgtgacaccgtgatcgaggggatgttcagatcataggg 514 |||||||| ||| | ||||| || | ||||| ||||||||||| ||||||||||| Sbjct: 2526 gtctgcgtgcctctaagctgggagatggtgattgaggggatgttgagatcataggg 2471 Score = 93.7 bits (47), Expect = 7e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 552 gttatgtttgatacttcacttggatcgacgtcagggatcgagcacaagaatgtgatgtag 611 |||||||||||||||||||| | || ||||| |||||||| ||||| ||||||||||| Sbjct: 2430 gttatgtttgatacttcactgtgttccacgtcggggatcgaacacaaaaatgtgatgtaa 2371 Query: 612 tcctgatgagttgcatctagaacaagg 638 || |||||||||||||| ||||||||| Sbjct: 2370 tcttgatgagttgcatccagaacaagg 2344
>gb|AY107126.1| Zea mays PCO066908 mRNA sequence Length = 829 Score = 107 bits (54), Expect = 4e-20 Identities = 201/250 (80%) Strand = Plus / Minus Query: 208 cctatttgaaccccatggcaaccactgggatcctgactaggtggcgccggtcacccttca 267 |||| ||||| ||||| || || |||||||| ||||| ||||| | |||||||| |||| Sbjct: 816 cctacttgaatcccatagctacgactgggattctgacgaggtgaccgcggtcacctttca 757 Query: 268 tcgtgatctcgccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtga 327 | | ||||| |||||||||||||| |||||||| | ||||| ||| |||||||| || | Sbjct: 756 tggcaatctcaccgaaactgtaggtgccggtcacggacctcgccgtcagggtcacagtta 697 Query: 328 tctctctagatgacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatct 387 |||||| |||| || |||| ||| |||| ||| ||||| | || ||||| |||| || Sbjct: 696 tctctcgtgatgctccggggaccacggtcaccgccggaggcgtcacctccagggcgacct 637 Query: 388 ccggcgacatcctggtcatgatggtgtaggtttctgcctcatcagccacgttcgtgactg 447 | |||| |||||| ||||||||||||||||| || | || || | |||| ||||||| | Sbjct: 636 ctggcggcatccttgtcatgatggtgtaggtctcggtttcgtcggacacgctcgtgacgg 577 Query: 448 tccgcttcac 457 |||||||||| Sbjct: 576 tccgcttcac 567 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 546 gagccggttatgtttgatacttcacttggatcgacgtcagggatcgagcacaagaatgtg 605 ||||||| ||||||||||||||| || | | |||||| ||||||||||||| || ||| Sbjct: 478 gagccggctatgtttgatacttcgctctggttgacgtcggggatcgagcacagaaacgtg 419 Query: 606 atgtagtcctgatgagttgcatctagaacaagg 638 |||||||| | ||| |||| |||||||||||| Sbjct: 418 atgtagtcttcatggcttgcgtctagaacaagg 386
>gb|BT018704.1| Zea mays clone EL01N0515D08.d mRNA sequence Length = 1950 Score = 101 bits (51), Expect = 3e-18 Identities = 171/211 (81%) Strand = Plus / Minus Query: 208 cctatttgaaccccatggcaaccactgggatcctgactaggtggcgccggtcacccttca 267 |||| ||||| ||||| || ||||||||||| ||||| | ||||| ||||| || |||| Sbjct: 1689 cctacttgaatcccatagctaccactgggattctgacgatgtggccgcggtcgcctttca 1630 Query: 268 tcgtgatctcgccgaaactgtaggtaccggtcaccgtcctcgtcgtgagggtcacggtga 327 | | |||||| |||||||||||||| |||||||| | ||||| ||| |||||||| | | Sbjct: 1629 tggcgatctctccgaaactgtaggtgccggtcacggacctcgccgtcagggtcacagcta 1570 Query: 328 tctctctagatgacccagggagcaccgtcagcgcgggaggtgagacgtccagcgcgatct 387 |||||| |||| || || |||||||||| ||| ||||| | || ||||| || | || Sbjct: 1569 cctctctcgatgctccgggcagcaccgtcaccgccggaggcgtcacctccagggcaacct 1510 Query: 388 ccggcgacatcctggtcatgatggtgtaggt 418 |||||| ||| || ||||||||||||||||| Sbjct: 1509 ccggcggcattctcgtcatgatggtgtaggt 1479 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 578 gacgtcagggatcgagcacaagaatgtgatgtagtcctgatgagttgcatctagaacaag 637 ||||||||||||||||||||| |||| |||||| || | || ||||||||||||||||| Sbjct: 1316 gacgtcagggatcgagcacaaaaatgcgatgtactcttcgtgggttgcatctagaacaag 1257
>ref|XM_541568.2| PREDICTED: Canis familiaris similar to zinc finger protein 342 (LOC484453), mRNA Length = 1496 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 527 ctggctggggctgcagcgtgagc 549 ||||||||||||||||||||||| Sbjct: 1012 ctggctggggctgcagcgtgagc 990
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 cgcgatctccggcgacatcctgg 402 ||||||||||||||||||||||| Sbjct: 2624361 cgcgatctccggcgacatcctgg 2624339
>ref|XM_761550.1| Theileria parva strain Muguga chromosome 1 cell division protein FtsH (TP01_1122) partial mRNA Length = 2421 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 501 ttcagatcatagggtccctgtc 522 |||||||||||||||||||||| Sbjct: 12 ttcagatcatagggtccctgtc 33
>gb|AF409102.1| Trichoplusia ni 3-dehydrecdysone 3b-reductase mRNA, complete cds Length = 1055 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 433 ccacgttcgtgactgtccgct 453 ||||||||||||||||||||| Sbjct: 651 ccacgttcgtgactgtccgct 631
>dbj|AB158498.1| Bombyx mori gene for trehalase, 5' upstream region Length = 5005 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 taggtaccggtcaccgtcctcgtcg 312 |||| |||||||||||||||||||| Sbjct: 316 taggcaccggtcaccgtcctcgtcg 292
>gb|DQ141103.1| Bombyx mori Dscam gene, partial sequence Length = 57601 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 35496 accggtcaccgtcctcgtcg 35477
>gb|AC084196.1| Caenorhabditis elegans cosmid Y55D5A, complete sequence Length = 86523 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ttcctaccaaactacaaaat 159 |||||||||||||||||||| Sbjct: 64582 ttcctaccaaactacaaaat 64563
>emb|AL451139.40| Human DNA sequence from clone RP11-569G9 on chromosome 1 Contains the 3' end of a novel gene (DKFZP434L0117), the SH3BGRL3 gene for SH3 domain binding glutamic acid-rich protein like 3, the gene for socius (SOC), the CDW52 gene for CDW52 antigen (CAMPATH-1 antigen), the AIM1L gene for absent in melanoma 1-like and a novel gene,, complete sequence Length = 145736 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ctcttctggctggggctgca 541 |||||||||||||||||||| Sbjct: 54645 ctcttctggctggggctgca 54664
>emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 in linkage group 12, complete sequence Length = 168372 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ccaaactacaaaatattaca 165 |||||||||||||||||||| Sbjct: 127710 ccaaactacaaaatattaca 127729
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 cgcgatctccggcgacatcc 399 |||||||||||||||||||| Sbjct: 44591 cgcgatctccggcgacatcc 44572
>dbj|AK097368.1| Homo sapiens cDNA FLJ40049 fis, clone SYNOV2001708 Length = 1920 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ctcttctggctggggctgca 541 |||||||||||||||||||| Sbjct: 120 ctcttctggctggggctgca 101
>gb|AF494090.1| Nicotiana sylvestris gibberellin 3-oxidase 2 (GA3ox2) mRNA, complete cds Length = 1285 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 catataaataggctacagaa 61 |||||||||||||||||||| Sbjct: 1036 catataaataggctacagaa 1017
>gb|DQ311393.1| Bombyx mori Prpk-binding protein mRNA, complete cds Length = 1264 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 922 accggtcaccgtcctcgtcg 903
>gb|AF303741.1|AF303741 Chilo iridescent virus complete genome Length = 212482 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cgtatttttacatcctgggg 86 |||||||||||||||||||| Sbjct: 53023 cgtatttttacatcctgggg 53004
>gb|AC010902.4|AC010902 Homo sapiens clone RP11-549J7, complete sequence Length = 114169 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tacaaaatattacaacactc 171 |||||||||||||||||||| Sbjct: 54250 tacaaaatattacaacactc 54231
>gb|AF226688.1|AF226688 Bombyx mori fibroin heavy chain Fib-H (fib-H) gene, complete cds Length = 80009 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 30424 accggtcaccgtcctcgtcg 30405
>emb|BX005106.5| Zebrafish DNA sequence from clone DKEY-188I13, complete sequence Length = 216863 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aacacagacaatacatcatt 115 |||||||||||||||||||| Sbjct: 185928 aacacagacaatacatcatt 185947
>gb|U07847.1|BMAMYNLTRR Bombyx mori truncated alpha-amylase (amy) gene, complete cds; and retrotransposon reverse transcriptase gene, complete cds Length = 8970 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 8589 accggtcaccgtcctcgtcg 8608
>dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, complete sequence Length = 124898 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 66365 accggtcaccgtcctcgtcg 66346 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 41972 accggtcaccgtcctcgtcg 41953 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 26355 accggtcaccgtcctcgtcg 26374
>dbj|AB002270.1| Bombyx mori L1Bm DNA, non-LTR retrotransposon Length = 5636 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 363 accggtcaccgtcctcgtcg 344
>emb|AL732544.12| Zebrafish DNA sequence from clone BUSM1-6I1 in linkage group 7, complete sequence Length = 135141 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 gagcatcataagagaacaatacac 204 ||||||||||||||||| |||||| Sbjct: 90668 gagcatcataagagaactatacac 90645
>emb|CT009654.2| Medicago truncatula chromosome 5 clone mth2-17c15, COMPLETE SEQUENCE Length = 126536 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cataagagaacaatacacga 206 |||||||||||||||||||| Sbjct: 59331 cataagagaacaatacacga 59312
>dbj|AB090307.1| Bombyx mori Bmfkbp13, Bmhepa, Bmhig, Bm6922, Bmlap, Bmprojectin, Bmkettin, Bmtitin1 genes, partial and complete cds Length = 160000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 36543 accggtcaccgtcctcgtcg 36524
>dbj|AB079861.1| Bombyx mori Bmhig gene for hypothetical protein, complete cds Length = 13140 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 7923 accggtcaccgtcctcgtcg 7942
>emb|AL928803.6| Mouse DNA sequence from clone RP23-319N14 on chromosome 2, complete sequence Length = 109092 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caccatcataacacagacaa 106 |||||||||||||||||||| Sbjct: 93861 caccatcataacacagacaa 93880
>gb|AY353886.1| Rabies virus isolate 2072f glycoprotein (G) mRNA, partial cds Length = 854 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 tggtgtaggtttctgcctca 428 |||||||||||||||||||| Sbjct: 186 tggtgtaggtttctgcctca 167
>emb|AL845478.6| Mouse DNA sequence from clone RP23-186J18 on chromosome 2, complete sequence Length = 222451 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctcctcagctcagagcatca 188 |||||||||||||||||||| Sbjct: 41617 ctcctcagctcagagcatca 41636
>gb|DQ243319.1| Bombyx mori chromosome 05 microsatellite S0514-R sequence Length = 716 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 573 accggtcaccgtcctcgtcg 592
>gb|DQ243067.1| Bombyx mori chromosome 11 microsatellite S1128-F sequence Length = 501 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 328 accggtcaccgtcctcgtcg 347
>gb|DQ242762.1| Bombyx mori chromosome 12 microsatellite S1207-F sequence Length = 973 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 accggtcaccgtcctcgtcg 312 |||||||||||||||||||| Sbjct: 264 accggtcaccgtcctcgtcg 245
>dbj|AB032198.1| Nicotiana tabacum mRNA for gibberellin 3beta-hydroxylase, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 catataaataggctacagaa 61 |||||||||||||||||||| Sbjct: 913 catataaataggctacagaa 894 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,400,575 Number of Sequences: 3902068 Number of extensions: 4400575 Number of successful extensions: 79446 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79285 Number of HSP's gapped (non-prelim): 160 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)