ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdf05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 4e-73
2dbj|AK111525.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 9e-71
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
4dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
5gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.57
6ref|XM_545686.2| PREDICTED: Canis familiaris similar to transmem... 42 2.3
7emb|AL137002.19| Human DNA sequence from clone RP11-98F14 on chr... 42 2.3
8gb|AF503510.1| Homo sapiens coagulation factor X (F10) gene, com... 42 2.3
9dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.3
10ref|NM_127612.2| Arabidopsis thaliana FLA6 (fasciclin-like arabi... 40 8.9
11ref|NM_126350.2| Arabidopsis thaliana unknown protein AT2G02980 ... 40 8.9
12gb|AC148878.2| Chlamydomonas reinhardtii clone cr-29B2, complete... 40 8.9
13gb|AE013121.1| Thermoanaerobacter tengcongensis MB4, section 148... 40 8.9
14gb|AF517844.1| Arabidopsis thaliana hypothetical protein (AT2G02... 40 8.9
15gb|AC129301.3| Mus musculus BAC clone RP24-434C14 from chromosom... 40 8.9
16gb|AC117518.3| Homo sapiens X BAC RP13-106B4 (Roswell Park Cance... 40 8.9
17gb|AC034195.7| Homo sapiens chromosome 3 clone RP11-673F20 map 3... 40 8.9
18emb|AL583925.1|MLEPRTN9 Mycobacterium leprae strain TN complete ... 40 8.9
19emb|AL023596.1|MLCB2407 Mycobacterium leprae cosmid B2407 40 8.9
20gb|AC005145.1| Homo sapiens Xp22-166-169 GSHB-523A23 (Genome Sys... 40 8.9
21gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.9
22gb|AC007109.7| Arabidopsis thaliana chromosome 2 clone T13C7 map... 40 8.9
23gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 ma... 40 8.9
24gb|AC078909.7| Homo sapiens chromosome 15, clone RP11-128A17, co... 40 8.9
25gb|AC069483.6| Homo sapiens, clone RP11-29M5, complete sequence 40 8.9
26emb|BX324224.11| Zebrafish DNA sequence from clone CH211-168H21 ... 40 8.9
27gb|AF333972.1|AF333972 Arabidopsis thaliana fasciclin-like arabi... 40 8.9
28gb|AC023478.5|AC023478 Homo sapiens chromosome 3 clone RP11-360E... 40 8.9
29gb|AC005510.3|AC005510 Homo sapiens chromosome 4 clone B368A9 ma... 40 8.9
30gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, comple... 40 8.9

>dbj|AK099499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028A12, full
           insert sequence
          Length = 1070

 Score =  283 bits (143), Expect = 4e-73
 Identities = 278/323 (86%)
 Strand = Plus / Minus

                                                                       
Query: 329 tggccgccgcgaacacgtccttgggcctctcccacccgccgccgaacaccccgtgccctt 388
           ||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||| |||
Sbjct: 705 tggccgcagcgaacacgtcccggggcctctcccacccgccgccgaacacgccgtgcgctt 646

                                                                       
Query: 389 ccttgggctgcggacgcgtcatgaactccagcaccgggagttcttggctcccgacccagt 448
           ||||  |||| || || | || ||||||||||||||  || || | ||||   |||||||
Sbjct: 645 ccttctgctgtggccgtgccaggaactccagcaccgctagctcctcgctcatcacccagt 586

                                                                       
Query: 449 ggatgcagttcacagggcaggactccacagccacctggatctgctggtccgcgtcaccga 508
           ||||||||||||| ||||| ||||||||||| ||||| |||| ||| |||  ||| || |
Sbjct: 585 ggatgcagttcactgggcacgactccacagctacctgtatcttctgctcctggtctccaa 526

                                                                       
Query: 509 actggacttggacgcgcgcgcttccaagaacatcgtccatggcaaacgtctcgccagcat 568
           ||||||||| |||| | ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 525 actggacttcgacgtgagcgcttccaagaacatcgtccatcgcgaatgtctctccggcat 466

                                                                       
Query: 569 ggtggacacactccctacatcctatgcatttgttctcatccacaaagagagcttggcttc 628
           ||||||| ||||||||||||||||||||||||||||| || |||||||| || |||||||
Sbjct: 465 ggtggacgcactccctacatcctatgcatttgttctcgtcgacaaagagtgcatggcttc 406

                                  
Query: 629 tcataggcccattccaagaactg 651
           ||| ||||||||||||| |||||
Sbjct: 405 tcacaggcccattccaacaactg 383



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                       
Query: 144 tttcctccagtctcccaacccattccaaatatcgagcaaactcttccaccggagctcctg 203
           |||| ||||||| | || ||||||||| | |||| |||||| ||||||||||||||||||
Sbjct: 893 tttcgtccagtccctcagcccattccacacatcgcgcaaacgcttccaccggagctcctg 834

                                       
Query: 204 ccccgcgtgacgtctcgcttcggcctgc 231
           ||| ||| |||| ||||| |||||||||
Sbjct: 833 ccctgcgcgacgcctcgcctcggcctgc 806



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>dbj|AK111525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022M11, full
           insert sequence
          Length = 2226

 Score =  276 bits (139), Expect = 9e-71
 Identities = 277/323 (85%)
 Strand = Plus / Minus

                                                                       
Query: 329 tggccgccgcgaacacgtccttgggcctctcccacccgccgccgaacaccccgtgccctt 388
           ||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||| |||
Sbjct: 696 tggccgcagcgaacacgtcccggggcctctcccacccgccgccgaacacgccgtgcgctt 637

                                                                       
Query: 389 ccttgggctgcggacgcgtcatgaactccagcaccgggagttcttggctcccgacccagt 448
           ||||  |||| || || | || ||||||||||||||  || || | ||||   |||||||
Sbjct: 636 ccttctgctgtggccgtgccaggaactccagcaccgctagctcctcgctcatcacccagt 577

                                                                       
Query: 449 ggatgcagttcacagggcaggactccacagccacctggatctgctggtccgcgtcaccga 508
           ||||||||||||| ||||| ||||||||||| ||||| |||| ||  |||  ||| || |
Sbjct: 576 ggatgcagttcactgggcacgactccacagctacctgtatcttctactcctggtctccaa 517

                                                                       
Query: 509 actggacttggacgcgcgcgcttccaagaacatcgtccatggcaaacgtctcgccagcat 568
           ||||||||| |||| | ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 516 actggacttcgacgtgagcgcttccaagaacatcgtccatcgcgaatgtctctccggcat 457

                                                                       
Query: 569 ggtggacacactccctacatcctatgcatttgttctcatccacaaagagagcttggcttc 628
           ||||||| ||||||||||||||||||||||||||||| || |||||||| || |||||||
Sbjct: 456 ggtggacgcactccctacatcctatgcatttgttctcgtcgacaaagagtgcatggcttc 397

                                  
Query: 629 tcataggcccattccaagaactg 651
           ||| ||||||||||||| |||||
Sbjct: 396 tcacaggcccattccaacaactg 374



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  129 bits (65), Expect = 1e-26
 Identities = 134/157 (85%)
 Strand = Plus / Plus

                                                                            
Query: 329      tggccgccgcgaacacgtccttgggcctctcccacccgccgccgaacaccccgtgccctt 388
                ||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||| |||
Sbjct: 15699284 tggccgcagcgaacacgtcccggggcctctcccacccgccgccgaacacgccgtgcgctt 15699343

                                                                            
Query: 389      ccttgggctgcggacgcgtcatgaactccagcaccgggagttcttggctcccgacccagt 448
                ||||  |||| || || | || ||||||||||||||  || || | ||||   |||||||
Sbjct: 15699344 ccttctgctgtggccgtgccaggaactccagcaccgctagctcctcgctcatcacccagt 15699403

                                                     
Query: 449      ggatgcagttcacagggcaggactccacagccacctg 485
                ||||||||||||| ||||| ||||||||||| |||||
Sbjct: 15699404 ggatgcagttcactgggcacgactccacagctacctg 15699440



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 76/85 (89%)
 Strand = Plus / Plus

                                                                            
Query: 508      aactggacttggacgcgcgcgcttccaagaacatcgtccatggcaaacgtctcgccagca 567
                |||||||||| |||| | ||||||||||||||||||||||| || || ||||| || |||
Sbjct: 15699848 aactggacttcgacgtgagcgcttccaagaacatcgtccatcgcgaatgtctctccggca 15699907

                                         
Query: 568      tggtggacacactccctacatccta 592
                |||||||| ||||||||||||||||
Sbjct: 15699908 tggtggacgcactccctacatccta 15699932



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 144      tttcctccagtctcccaacccattccaaatatcgagcaaactcttccaccggagctcctg 203
                |||| ||||||| | || ||||||||| | |||| |||||| ||||||||||||||||||
Sbjct: 15697551 tttcgtccagtccctcagcccattccacacatcgcgcaaacgcttccaccggagctcctg 15697610

                                            
Query: 204      ccccgcgtgacgtctcgcttcggcctgc 231
                ||| ||| |||| ||||| |||||||||
Sbjct: 15697611 ccctgcgcgacgcctcgcctcggcctgc 15697638



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 589      cctatgcatttgttctcatccacaaagagagcttggcttctcataggcccattccaagaa 648
                ||||||||||||||||| || |||||||| || |||||||||| ||||||||||||| ||
Sbjct: 15700046 cctatgcatttgttctcgtcgacaaagagtgcatggcttctcacaggcccattccaacaa 15700105

                   
Query: 649      ctg 651
                |||
Sbjct: 15700106 ctg 15700108



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>dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0021H10
          Length = 142659

 Score =  129 bits (65), Expect = 1e-26
 Identities = 134/157 (85%)
 Strand = Plus / Plus

                                                                         
Query: 329   tggccgccgcgaacacgtccttgggcctctcccacccgccgccgaacaccccgtgccctt 388
             ||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||| |||
Sbjct: 34922 tggccgcagcgaacacgtcccggggcctctcccacccgccgccgaacacgccgtgcgctt 34981

                                                                         
Query: 389   ccttgggctgcggacgcgtcatgaactccagcaccgggagttcttggctcccgacccagt 448
             ||||  |||| || || | || ||||||||||||||  || || | ||||   |||||||
Sbjct: 34982 ccttctgctgtggccgtgccaggaactccagcaccgctagctcctcgctcatcacccagt 35041

                                                  
Query: 449   ggatgcagttcacagggcaggactccacagccacctg 485
             ||||||||||||| ||||| ||||||||||| |||||
Sbjct: 35042 ggatgcagttcactgggcacgactccacagctacctg 35078



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 76/85 (89%)
 Strand = Plus / Plus

                                                                         
Query: 508   aactggacttggacgcgcgcgcttccaagaacatcgtccatggcaaacgtctcgccagca 567
             |||||||||| |||| | ||||||||||||||||||||||| || || ||||| || |||
Sbjct: 35486 aactggacttcgacgtgagcgcttccaagaacatcgtccatcgcgaatgtctctccggca 35545

                                      
Query: 568   tggtggacacactccctacatccta 592
             |||||||| ||||||||||||||||
Sbjct: 35546 tggtggacgcactccctacatccta 35570



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                         
Query: 144   tttcctccagtctcccaacccattccaaatatcgagcaaactcttccaccggagctcctg 203
             |||| ||||||| | || ||||||||| | |||| |||||| ||||||||||||||||||
Sbjct: 33189 tttcgtccagtccctcagcccattccacacatcgcgcaaacgcttccaccggagctcctg 33248

                                         
Query: 204   ccccgcgtgacgtctcgcttcggcctgc 231
             ||| ||| |||| ||||| |||||||||
Sbjct: 33249 ccctgcgcgacgcctcgcctcggcctgc 33276



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 589   cctatgcatttgttctcatccacaaagagagcttggcttctcataggcccattccaagaa 648
             ||||||||||||||||| || |||||||| || |||||||||| ||||||||||||| ||
Sbjct: 35684 cctatgcatttgttctcgtcgacaaagagtgcatggcttctcacaggcccattccaacaa 35743

                
Query: 649   ctg 651
             |||
Sbjct: 35744 ctg 35746



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 491     gctggtccgcgtcaccgaactg 512
               ||||||||||||||||||||||
Sbjct: 3947326 gctggtccgcgtcaccgaactg 3947305



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>ref|XM_545686.2| PREDICTED: Canis familiaris similar to transmembrane and coiled-coil
            domains 2 (LOC488569), mRNA
          Length = 2374

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 464  ggcaggactccacagccacctggat 488
            ||||||||||||||||| |||||||
Sbjct: 1879 ggcaggactccacagcctcctggat 1855



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>emb|AL137002.19| Human DNA sequence from clone RP11-98F14 on chromosome 13q22.1-31.1
             Contains the 3' end of the MCF2L gene for MCF.2 cell line
             derived transforming sequence-like, the F7 gene for
             coagulation factor VII (serum prothrombin conversion
             accelerator), the F10 gene for coagulation factor X, a
             lysyl-tRNA synthetase (KARS) pseudogene, the PROZ gene for
             protein Z, vitamin K-dependent plasma glycoprotein (PZ),
             the 3' end of a novel gene (FLJ11305) and six CpG islands,
             complete sequence
          Length = 132933

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 388   tccttgggctgcggacgcgtc 408
             |||||||||||||||||||||
Sbjct: 62357 tccttgggctgcggacgcgtc 62377



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>gb|AF503510.1| Homo sapiens coagulation factor X (F10) gene, complete cds
          Length = 29488

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 388   tccttgggctgcggacgcgtc 408
             |||||||||||||||||||||
Sbjct: 16531 tccttgggctgcggacgcgtc 16551



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 336     cgcgaacacgtccttgggcct 356
               |||||||||||||||||||||
Sbjct: 4253164 cgcgaacacgtccttgggcct 4253184



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>ref|NM_127612.2| Arabidopsis thaliana FLA6 (fasciclin-like arabinogalactan-protein
           6) AT2G20520 (FLA6) mRNA, complete cds
          Length = 799

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ccaccggagctcctgccccg 208
           ||||||||||||||||||||
Sbjct: 581 ccaccggagctcctgccccg 600



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>ref|NM_126350.2| Arabidopsis thaliana unknown protein AT2G02980 mRNA, complete cds
          Length = 2027

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   tgtggttgcagtcttcacaccatc 76
            ||||||||||| ||||||||||||
Sbjct: 1588 tgtggttgcagacttcacaccatc 1565



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>gb|AC148878.2| Chlamydomonas reinhardtii clone cr-29B2, complete sequence
          Length = 64153

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   cgtgcccttccttgggctgc 399
             ||||||||||||||||||||
Sbjct: 54548 cgtgcccttccttgggctgc 54529



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>gb|AE013121.1| Thermoanaerobacter tengcongensis MB4, section 148 of 244 of the
            complete genome
          Length = 12232

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 110  actagcaattgcacatctac 129
            ||||||||||||||||||||
Sbjct: 2912 actagcaattgcacatctac 2931



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>gb|AF517844.1| Arabidopsis thaliana hypothetical protein (AT2G02980/T17M13.15) mRNA,
            complete cds
          Length = 2066

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   tgtggttgcagtcttcacaccatc 76
            ||||||||||| ||||||||||||
Sbjct: 1589 tgtggttgcagacttcacaccatc 1566



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>gb|AC129301.3| Mus musculus BAC clone RP24-434C14 from chromosome 8, complete sequence
          Length = 181111

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    agcaaactcttccaccggag 197
              ||||||||||||||||||||
Sbjct: 176789 agcaaactcttccaccggag 176770



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>gb|AC117518.3| Homo sapiens X BAC RP13-106B4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170368

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    agtctcccaacccattccaa 171
              ||||||||||||||||||||
Sbjct: 144559 agtctcccaacccattccaa 144578



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>gb|AC034195.7| Homo sapiens chromosome 3 clone RP11-673F20 map 3p, complete sequence
          Length = 189848

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   ttctcataggcccattccaa 645
             ||||||||||||||||||||
Sbjct: 93150 ttctcataggcccattccaa 93169



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>emb|AL583925.1|MLEPRTN9 Mycobacterium leprae strain TN complete genome; segment 9/10
          Length = 308950

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 221   cttcggcctgcgctgccgtttcagcctc 248
             ||||||||||||||| |||||| |||||
Sbjct: 79909 cttcggcctgcgctggcgtttcggcctc 79882



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>emb|AL023596.1|MLCB2407 Mycobacterium leprae cosmid B2407
          Length = 35615

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 221   cttcggcctgcgctgccgtttcagcctc 248
             ||||||||||||||| |||||| |||||
Sbjct: 21040 cttcggcctgcgctggcgtttcggcctc 21067



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>gb|AC005145.1| Homo sapiens Xp22-166-169 GSHB-523A23 (Genome Systems Human BAC
             library) complete sequence
          Length = 143678

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   agtctcccaacccattccaa 171
             ||||||||||||||||||||
Sbjct: 10804 agtctcccaacccattccaa 10785



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 333     cgccgcgaacacgtccttgg 352
               ||||||||||||||||||||
Sbjct: 4856824 cgccgcgaacacgtccttgg 4856843



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>gb|AC007109.7| Arabidopsis thaliana chromosome 2 clone T13C7 map mi148, complete
             sequence
          Length = 52784

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   ccaccggagctcctgccccg 208
             ||||||||||||||||||||
Sbjct: 34703 ccaccggagctcctgccccg 34722



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>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete
             sequence
          Length = 104016

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    tgtggttgcagtcttcacaccatc 76
             ||||||||||| ||||||||||||
Sbjct: 50184 tgtggttgcagacttcacaccatc 50161



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>gb|AC078909.7| Homo sapiens chromosome 15, clone RP11-128A17, complete sequence
          Length = 170257

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 627    tctcataggcccattccaag 646
              ||||||||||||||||||||
Sbjct: 142696 tctcataggcccattccaag 142715



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>gb|AC069483.6| Homo sapiens, clone RP11-29M5, complete sequence
          Length = 151321

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 627   tctcataggcccattccaag 646
             ||||||||||||||||||||
Sbjct: 44378 tctcataggcccattccaag 44397



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>emb|BX324224.11| Zebrafish DNA sequence from clone CH211-168H21 in linkage group 13,
              complete sequence
          Length = 147168

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     accaacgactagcaaatcac 100
              ||||||||||||||||||||
Sbjct: 113494 accaacgactagcaaatcac 113513



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>gb|AF333972.1|AF333972 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 6
           (Fla6) mRNA, complete cds
          Length = 744

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ccaccggagctcctgccccg 208
           ||||||||||||||||||||
Sbjct: 581 ccaccggagctcctgccccg 600



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>gb|AC023478.5|AC023478 Homo sapiens chromosome 3 clone RP11-360E14 map 3p, complete sequence
          Length = 167881

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 626   ttctcataggcccattccaa 645
             ||||||||||||||||||||
Sbjct: 96664 ttctcataggcccattccaa 96645



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>gb|AC005510.3|AC005510 Homo sapiens chromosome 4 clone B368A9 map 4q25, complete sequence
          Length = 168468

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   tcgccagcatggtggacaca 578
             ||||||||||||||||||||
Sbjct: 79991 tcgccagcatggtggacaca 80010



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>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence
          Length = 166104

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    agcaaactcttccaccggag 197
              ||||||||||||||||||||
Sbjct: 106522 agcaaactcttccaccggag 106541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,576,048
Number of Sequences: 3902068
Number of extensions: 4576048
Number of successful extensions: 85775
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85526
Number of HSP's gapped (non-prelim): 245
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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