>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4912

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -1

Query: 640  LACIYAIVQQAHQKLTPPDS-PPRGYAPLSPPRR---HSISIASMNRLDDKSS 494
            L CI ++  QAHQ+L+     PP G A  SPP+    H + + ++ R + K S
Sbjct: 2446 LNCIQSLATQAHQELSEGGGVPPNGRALSSPPQPTMVHGVPVYNVARKEQKPS 2498

>INVE_SALTY (P35671) Invasion protein invE|
          Length = 372

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 17/73 (23%)
 Frame = -1

Query: 400 QVRNRLSYEQFSAFLAN-----------------VKELNAHKQTREDTLRKADAIFGPEN 272
           Q RNR  YE+ S+ L+N                 +K ++ H    ED LR+A ++F P+ 
Sbjct: 64  QFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLF-PDP 122

Query: 271 SDLYTIFESLITR 233
           SDL  +   L+ R
Sbjct: 123 SDLVLVLRELLRR 135

>INVE_SALTI (Q56052) Invasion protein invE|
          Length = 372

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 17/73 (23%)
 Frame = -1

Query: 400 QVRNRLSYEQFSAFLAN-----------------VKELNAHKQTREDTLRKADAIFGPEN 272
           Q RNR  YE+ S+ L+N                 +K ++ H    ED LR+A ++F P+ 
Sbjct: 64  QFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLF-PDP 122

Query: 271 SDLYTIFESLITR 233
           SDL  +   L+ R
Sbjct: 123 SDLVLVLRELLRR 135

>PTC_DROME (P18502) Protein patched (Hedgehog receptor)|
          Length = 1286

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 649  ATPLACIYAIVQQAHQKLTPPDSPPRGYAPLSPPRRHSISI 527
            A P A   A  QQ HQ   PP +PP  +    PP   SI +
Sbjct: 1204 APPPAYHKAAAQQHHQHQGPPTTPPPPFPTAYPPELQSIVV 1244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,857,396
Number of Sequences: 219361
Number of extensions: 2142133
Number of successful extensions: 6396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6387
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7932903580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)