>QOX1_BACSU (P34956) Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase|
           polypeptide I) (Quinol oxidase aa3-600, subunit qoxB)
           (Oxidase aa(3)-600 subunit 1)
          Length = 649

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
 Frame = -1

Query: 419 VVFAMNAFIKRLLAVSDPAQMKTAVSETSGAQLANLLFWLMIVGYSMRNIEVRFDMERVL 240
           ++F    F+  L+ V  P Q+     + +   L NL FW   VG  + NI        V+
Sbjct: 107 IIFMAMPFLIGLINVVVPLQI--GARDVAFPYLNNLSFWTFFVGAMLFNISF------VI 158

Query: 239 GAAPKMG---------GELPPGPGDN 189
           G +P  G          ++ PGPG+N
Sbjct: 159 GGSPNAGWTSYMPLASNDMSPGPGEN 184

>GUAAB_METMA (Q8PXK0) GMP synthase [glutamine-hydrolyzing] subunit B (EC|
           6.3.5.2) (GMP synthetase)
          Length = 305

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 464 EPQNLKELASSAGEDVVFAMNAFIKRLLAVSDPAQMKTAVSET 336
           E + ++ + S    DVV+A + F+  L  V+DP + + A+ ET
Sbjct: 63  ETERIRHIFSHMNLDVVYAKDRFLAALAGVTDPEEKRKAIGET 105

>ECM29_HUMAN (Q5VYK3) Proteasome-associated protein ECM29 homolog (Ecm29)|
          Length = 1845

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = -1

Query: 605  NKTTGPEKIDAVKYIELLEAEIDELSRQVARKSSQGSNELLEYLKTLEPQNLKELASSA 429
            NKT    + +A+  IELL  +++E S+Q    +S+    L+E L T+EP +  EL   A
Sbjct: 1777 NKTYSSVRTEALSVIELLLKKLEE-SKQWECLTSECRVLLIESLATMEPDSRPELQEKA 1834

>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chromosome|
           segregation protein cut3) (Cell untimely torn protein 3)
          Length = 1324

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
 Frame = -1

Query: 557 LLEAEIDELSRQVARKSSQGSNELLEYL---------KTLEPQNLKELASSAGEDVVFAM 405
           +L+ E++ +++   R  S+G + LLEYL         K +  +N++EL++S  +D+    
Sbjct: 265 ILQGEVESIAQMKPRAISEGDDGLLEYLEDIIGTSKYKPIIEENMQELSNS--DDICAEK 322

Query: 404 NAFIKRLLAVSDPAQMK 354
            + +K  L +S+ A+++
Sbjct: 323 ESRLK--LVLSEKAKLE 337

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = -1

Query: 572  VKYIELLEAEIDELSRQVARKSSQGSNELLEYLKTLEPQNLKELASSAGED 420
            V+YIE      +E    +AR + + +++LL+++K  +  N+ EL +++  D
Sbjct: 1230 VRYIEHNARTFNEPESVIARSAKKITDQLLKFIKNQDCTNISELCNTSDND 1280

>SYY_LISMO (Q8Y6T4) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 419

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
 Frame = -1

Query: 578 DAVKYIE----LLEAEIDELSRQVARKSSQGSNELLEYLKTLEPQNLKELASSAGEDVVF 411
           D VKY++    L EAEIDEL++QV     +    L    KTL  +  K + S    +   
Sbjct: 262 DVVKYLKYFTFLTEAEIDELAKQV-----ETEPHLRAAQKTLAAEMTKFVHSEEALEQAL 316

Query: 410 AM-----NAFIKRLLAVSDPAQMKTAVSETSGAQLANLLFWLMIVGYSMRNIEVRFDM 252
            +     +  +K L A       K   +  +    ANL+ WL+ +G      + R D+
Sbjct: 317 KISKALFSGDVKALTADEIEQGFKDVPTFVAEDSEANLVDWLVTLGIEPSKRQAREDV 374

>RPOC2_CHLRE (Q7PCJ6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 3120

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
 Frame = -1

Query: 614  IRWNKTTGPEKIDAVKYIELLEAEID------ELSRQVARKSSQGSNELLEYLKTLE--P 459
            +RW K   P  +     I  LE  +D      +LS     +  Q SN LLE++KT++  P
Sbjct: 1675 LRWVKNKKPRFLPKDIDINTLEVNLDRIKPKNKLSNLNPTQQLQLSNSLLEFVKTIKINP 1734

Query: 458  QNLKELASSAGEDVVFAMNAFIKRLLAVSDPAQMKT 351
             +L ++ S +   V+   N   +  L VS+   +KT
Sbjct: 1735 TDLAKVYSGSANTVMSIENC--QPSLEVSNTFFLKT 1768

>GUAAB_ARCFU (O29986) GMP synthase [glutamine-hydrolyzing] subunit B (EC|
           6.3.5.2) (GMP synthetase)
          Length = 303

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 464 EPQNLKELASSAGEDVVFAMNAFIKRLLAVSDPAQMKTAVSE 339
           EP+ +KE+  + G   + A   F K L  V+DP + +  + E
Sbjct: 62  EPEKIKEIFGNMGLVFIDAKEEFFKALKGVTDPEEKRKVIGE 103

>SYY_LISMF (Q71Z70) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 419

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
 Frame = -1

Query: 578 DAVKYIE----LLEAEIDELSRQVARKSSQGSNELLEYLKTLEPQNLKELASSAGEDVVF 411
           D VKY++    L EAEIDEL++QV     +    L    KTL  +  K + S    +   
Sbjct: 262 DVVKYLKYFTFLTEAEIDELAKQV-----ETEPHLRAAQKTLAAEMTKFVHSEEALEQAL 316

Query: 410 AM-----NAFIKRLLAVSDPAQMKTAVSETSGAQLANLLFWLMIVGYSMRNIEVRFDM 252
            +     +  +K L A       K   +  +    ANL+ WL+ +G      + R D+
Sbjct: 317 KISKALFSGDVKALTADEIEQGFKDVPTFVAEDTEANLVDWLVTLGIEPSKRQAREDV 374

>CYSNC_XYLFA (Q9PD78) CysN/cysC bifunctional enzyme [Includes: Sulfate|
           adenylyltransferase subunit 1 (EC 2.7.7.4) (Sulfate
           adenylate transferase) (SAT) (ATP-sulfurylase large
           subunit); Adenylyl-sulfate kinase (EC 2.7.1.25) (APS
           kinase) (ATP adenosine-5'-p
          Length = 623

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 581 IDAVKYIELLEAEIDELSRQVARKSSQGSNELLEYLKTLEPQNL 450
           I+ V+ I L   E D LS++ AR        LLEYL+ LEP ++
Sbjct: 185 INQVQCIPLSALEGDNLSKRSARMPWYVGPSLLEYLEALEPADV 228

>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)|
           (Strand-exchange protein 1 homolog) (Protein Dhm2)
          Length = 1719

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = -1

Query: 524 QVARKSSQGSNELLEYLKTLEPQNLK--ELASSAGEDVVFAMNAFIK--RLLAVSDPAQM 357
           QV ++SS+G N +LE     EP  L+   +AS+     VF     ++  R++AVSD  + 
Sbjct: 677 QVFQQSSRGENLMLEISVNAEPDELRIENIASAVLGKAVFVNWPHLEEARVVAVSD-GET 735

Query: 356 KTAVSETSGAQ 324
           K  + E  G Q
Sbjct: 736 KFYIEEPPGTQ 746

>YAOE_SCHPO (Q10093) Hypothetical protein C11D3.14c in chromosome I|
          Length = 1260

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 29/118 (24%), Positives = 46/118 (38%)
 Frame = +3

Query: 186 RVVSRARRQLAAHLGGGSQHSLHVKTHLNVAHAVPDDHQPEQQVRQLSTAXXXXXXXXXX 365
           R +  +   LA   G G QH+  + + LN+   +   +        L+ A          
Sbjct: 469 RGLDLSAHHLAVFGGAGGQHACAIASLLNIEKIIIHKYSSVLSAYGLALAHVTHEEQMPC 528

Query: 366 XXXDGQQTLYECIHSKHDVLTRTTRKFLQILRF*SFQVFQELIASLR*FPSNLTAQLI 539
                +  L   I SK DVL +    FL+   +   Q+  EL A+LR +  N T  +I
Sbjct: 529 LSVLDEDNL-PLIQSKFDVLDKKAVSFLENEGYLESQISTELFANLR-YEGNDTTMMI 584

>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
            heavy chain)
          Length = 3110

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = -1

Query: 629  VSGEVIRWNKTTGPEKIDAVKYIELLEAEIDELSRQVARKSSQGSNELLEYLKTLEPQNL 450
            V+ + I+ N+T G       + +E L+ EID++ +++ RK+ +   E+ E         L
Sbjct: 1692 VNEKAIKLNETLGTRDEAFERNLEGLQKEIDQMIKELRRKNLETQKEIAEDELVAAEALL 1751

Query: 449  KELASSAGE 423
            K++    GE
Sbjct: 1752 KKVKKLFGE 1760

>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2320

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = -1

Query: 572  VKYIELLEAEIDELSRQVARKSSQGSNELLEYLKTLEPQNLKELASSAGED 420
            V+YIE      +E    +AR + + +++LL+++K     N+ EL++++  D
Sbjct: 1229 VRYIEHNARTFNEPESVIARSAKKITDQLLKFIKNQHCTNISELSNTSEND 1279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,910,662
Number of Sequences: 219361
Number of extensions: 1655994
Number of successful extensions: 4964
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4964
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)