ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasde23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024H02, full insert sequence Length = 1428 Score = 319 bits (161), Expect = 6e-84 Identities = 350/413 (84%) Strand = Plus / Minus Query: 223 atcttgggggcggctcccagcactctctccatgtcaaaacgcacctcaatgttgcgcatg 282 ||||| ||||| || |||| ||||| ||||||||||| ||||| ||||| ||||||||| Sbjct: 1091 atctttggggcagcacccaatactctttccatgtcaaaccgcacttcaatattgcgcatg 1032 Query: 283 ctgtacccgacgatcatcagccagaacagcaggttcgccagctgagcaccgctcgtctcc 342 ||||| || || ||||||| ||| |||| || ||| || |||||| | | || || || Sbjct: 1031 ctgtagccaacaatcatcaaccaaaacatcaagttggctagctgattagcacttgtttct 972 Query: 343 gacaccgccgtcttcatttgtgcagggtccgagacggccaacagacgctttatgaatgca 402 || || | |||||||| |||||||| || ||||| ||||| || ||||||||||||||| Sbjct: 971 gaaactgttgtcttcatctgtgcaggatctgagacagccaaaaggcgctttatgaatgca 912 Query: 403 ttcatagcaaacacgacgtcctcacccgcactactcgcaagttccttcagattttgaggt 462 ||||||||||| ||||| ||||| || |||||||| || || |||||||||||||||||| Sbjct: 911 ttcatagcaaaaacgacatcctcgccggcactacttgccagctccttcagattttgaggt 852 Query: 463 tctagagttttcaggtattccaggagctcattgcttccttgagatgatttcctagcaact 522 ||||||||||| || ||||||| ||| ||||| ||||||||||||||||| ||||||||| Sbjct: 851 tctagagtttttagatattccaagagttcattacttccttgagatgattttctagcaact 792 Query: 523 tgacggctcagctcatcgatttctgcttcaagcaattctatatatttcacagcgtcaatc 582 ||| |||| |||||||| ||||||||||||||||||||||||||||| || || ||||| Sbjct: 791 tgatggctgagctcatcaatttctgcttcaagcaattctatatattttactgcatcaatt 732 Query: 583 ttttctggtccagtggtcttgttccatcggatcacttccccacttaccttttt 635 || || || ||||| ||||||||||||||||| ||||| ||| | |||||||| Sbjct: 731 ttctcaggaccagtagtcttgttccatcggataacttctccagtaaccttttt 679
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 202 bits (102), Expect = 1e-48 Identities = 168/190 (88%) Strand = Plus / Plus Query: 446 ccttcagattttgaggttctagagttttcaggtattccaggagctcattgcttccttgag 505 |||||||||||||||||||||||||||| || ||||||| ||| ||||| |||||||||| Sbjct: 35859639 ccttcagattttgaggttctagagtttttagatattccaagagttcattacttccttgag 35859698 Query: 506 atgatttcctagcaacttgacggctcagctcatcgatttctgcttcaagcaattctatat 565 ||||||| |||||||||||| |||| || ||||| ||||||||||||||||||||||||| Sbjct: 35859699 atgattttctagcaacttgatggctgagttcatcaatttctgcttcaagcaattctatat 35859758 Query: 566 atttcacagcgtcaatcttttctggtccagtggtcttgttccatcggatcacttccccac 625 |||| || || ||||| || || || ||||| ||||||||||||||||| ||||| ||| Sbjct: 35859759 attttactgcatcaattttctcaggaccagtagtcttgttccatcggataacttctccag 35859818 Query: 626 ttaccttttt 635 | |||||||| Sbjct: 35859819 taaccttttt 35859828 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 354 cttcatttgtgcagggtccgagacggccaacagacgctttatgaatgcattcatagcaaa 413 |||||| |||||||| || ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 35859402 cttcatctgtgcaggatctgagacagccaaaaggcgctttatgaatgcattcatagcaaa 35859461 Query: 414 cacgacgtcctcacccgcactact 437 ||||| ||||| || |||||||| Sbjct: 35859462 aacgacatcctcgccggcactact 35859485 Score = 65.9 bits (33), Expect = 2e-07 Identities = 87/105 (82%) Strand = Plus / Plus Query: 223 atcttgggggcggctcccagcactctctccatgtcaaaacgcacctcaatgttgcgcatg 282 ||||| ||||| || |||| ||||| ||||||||||| ||||| ||||| ||||||||| Sbjct: 35859050 atctttggggcagcacccaatactctttccatgtcaaaccgcacttcaatattgcgcatg 35859109 Query: 283 ctgtacccgacgatcatcagccagaacagcaggttcgccagctga 327 ||||| || || ||||||| ||| |||| || ||| || |||||| Sbjct: 35859110 ctgtagccaacaatcatcaaccaaaacatcaagttggctagctga 35859154
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_E10 Length = 107284 Score = 202 bits (102), Expect = 1e-48 Identities = 168/190 (88%) Strand = Plus / Plus Query: 446 ccttcagattttgaggttctagagttttcaggtattccaggagctcattgcttccttgag 505 |||||||||||||||||||||||||||| || ||||||| ||| ||||| |||||||||| Sbjct: 50185 ccttcagattttgaggttctagagtttttagatattccaagagttcattacttccttgag 50244 Query: 506 atgatttcctagcaacttgacggctcagctcatcgatttctgcttcaagcaattctatat 565 ||||||| |||||||||||| |||| || ||||| ||||||||||||||||||||||||| Sbjct: 50245 atgattttctagcaacttgatggctgagttcatcaatttctgcttcaagcaattctatat 50304 Query: 566 atttcacagcgtcaatcttttctggtccagtggtcttgttccatcggatcacttccccac 625 |||| || || ||||| || || || ||||| ||||||||||||||||| ||||| ||| Sbjct: 50305 attttactgcatcaattttctcaggaccagtagtcttgttccatcggataacttctccag 50364 Query: 626 ttaccttttt 635 | |||||||| Sbjct: 50365 taaccttttt 50374 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 354 cttcatttgtgcagggtccgagacggccaacagacgctttatgaatgcattcatagcaaa 413 |||||| |||||||| || ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 49948 cttcatctgtgcaggatctgagacagccaaaaggcgctttatgaatgcattcatagcaaa 50007 Query: 414 cacgacgtcctcacccgcactact 437 ||||| ||||| || |||||||| Sbjct: 50008 aacgacatcctcgccggcactact 50031 Score = 65.9 bits (33), Expect = 2e-07 Identities = 87/105 (82%) Strand = Plus / Plus Query: 223 atcttgggggcggctcccagcactctctccatgtcaaaacgcacctcaatgttgcgcatg 282 ||||| ||||| || |||| ||||| ||||||||||| ||||| ||||| ||||||||| Sbjct: 49596 atctttggggcagcacccaatactctttccatgtcaaaccgcacttcaatattgcgcatg 49655 Query: 283 ctgtacccgacgatcatcagccagaacagcaggttcgccagctga 327 ||||| || || ||||||| ||| |||| || ||| || |||||| Sbjct: 49656 ctgtagccaacaatcatcaaccaaaacatcaagttggctagctga 49700
>dbj|AK105388.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H12, full insert sequence Length = 637 Score = 135 bits (68), Expect = 2e-28 Identities = 194/236 (82%) Strand = Plus / Minus Query: 223 atcttgggggcggctcccagcactctctccatgtcaaaacgcacctcaatgttgcgcatg 282 ||||| ||||| || |||| ||||| ||||||||||| ||||| ||||| ||||||||| Sbjct: 236 atctttggggcagcacccaatactctttccatgtcaaaccgcacttcaatattgcgcatg 177 Query: 283 ctgtacccgacgatcatcagccagaacagcaggttcgccagctgagcaccgctcgtctcc 342 ||||| || || ||||||| ||| |||| || ||| || |||||| | | || || || Sbjct: 176 ctgtagccaacaatcatcaaccaaaacatcaagttggctagctgattagcacttgtttct 117 Query: 343 gacaccgccgtcttcatttgtgcagggtccgagacggccaacagacgctttatgaatgca 402 || || | |||||||| |||||||| || ||||| ||||| || ||||||||||||||| Sbjct: 116 gaaactgttgtcttcatctgtgcaggatctgagacagccaaaaggcgctttatgaatgca 57 Query: 403 ttcatagcaaacacgacgtcctcacccgcactactcgcaagttccttcagattttg 458 ||||||||||| ||||| ||||| || |||||||| || || |||||||||||||| Sbjct: 56 ttcatagcaaaaacgacatcctcgccggcactacttgccagctccttcagattttg 1
>gb|AC016883.14| Homo sapiens chromosome 8, clone RP11-327N12, complete sequence Length = 180682 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 aaaaatacaaaatttctttttt 49 |||||||||||||||||||||| Sbjct: 58588 aaaaatacaaaatttctttttt 58609
>gb|AC018714.4| Homo sapiens BAC clone RP11-382A18 from 8, complete sequence Length = 176760 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 aaaaatacaaaatttctttttt 49 |||||||||||||||||||||| Sbjct: 141703 aaaaatacaaaatttctttttt 141724
>dbj|AP005662.3| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1205G3, complete sequence Length = 108147 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 aaaaatacaaaatttctttttt 49 |||||||||||||||||||||| Sbjct: 56926 aaaaatacaaaatttctttttt 56947
>gb|AC102311.10| Mus musculus chromosome 1, clone RP24-426M1, complete sequence Length = 175758 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 460 ggttctagagttttcaggtat 480 ||||||||||||||||||||| Sbjct: 120302 ggttctagagttttcaggtat 120322
>gb|AY622966.1| Mus musculus matrix metalloproteinase 2 (Mmp2) mRNA, partial cds Length = 334 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 301 cacagcgtcaatcttttctgg 281
>ref|NM_008610.2| Mus musculus matrix metallopeptidase 2 (Mmp2), mRNA Length = 3070 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 1872 cacagcgtcaatcttttctgg 1852
>gb|AE009086.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 112 of 256 of the complete sequence Length = 10140 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cgatcatcagccagaacagca 313 ||||||||||||||||||||| Sbjct: 4712 cgatcatcagccagaacagca 4732
>gb|BC070430.1| Mus musculus matrix metallopeptidase 2, mRNA (cDNA clone MGC:95837 IMAGE:6813184), complete cds Length = 3070 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 1872 cacagcgtcaatcttttctgg 1852
>gb|AC121604.3| Mus musculus BAC clone RP23-312E2 from chromosome 8, complete sequence Length = 209383 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 103641 cacagcgtcaatcttttctgg 103661
>ref|XM_674494.1| Plasmodium berghei strain ANKA hypothetical protein (PB000916.03.0) partial mRNA Length = 2451 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcaagcaattctatatattt 569 ||||||||||||||||||||| Sbjct: 1776 ttcaagcaattctatatattt 1796
>emb|X71466.1|RNCOLL R. Norvegicus mRNA for 72 KDa type IV collagenase Length = 3231 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 2048 cacagcgtcaatcttttctgg 2028
>emb|BX957221.1| Methanococcus maripaludis S2 complete genome; segment 3/5 Length = 348230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 aaaatacaaaatttctttttt 49 ||||||||||||||||||||| Sbjct: 34969 aaaatacaaaatttctttttt 34949
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cgatcatcagccagaacagca 313 ||||||||||||||||||||| Sbjct: 1230366 cgatcatcagccagaacagca 1230386
>dbj|AK148184.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370043G23 product:matrix metalloproteinase 2, full insert sequence Length = 3037 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 1871 cacagcgtcaatcttttctgg 1851
>dbj|AK163248.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020005O16 product:matrix metalloproteinase 2, full insert sequence Length = 936 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 184 cacagcgtcaatcttttctgg 164
>gb|DP000002.1| Sminthopsis macroura target 1 genomic scaffold Length = 305394 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 28 aaaaatacaaaatttcttttttcta 52 |||||||||||||||| |||||||| Sbjct: 46883 aaaaatacaaaatttcatttttcta 46859
>gb|AC123967.3| Sminthopsis macroura clone 102C13, complete sequence Length = 59818 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 28 aaaaatacaaaatttcttttttcta 52 |||||||||||||||| |||||||| Sbjct: 46883 aaaaatacaaaatttcatttttcta 46859
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 243 cactctctccatgtcaaaacgcacctcaa 271 |||||||||||| |||| ||||||||||| Sbjct: 11386462 cactctctccatttcaagacgcacctcaa 11386490
>ref|NM_031054.1| Rattus norvegicus matrix metallopeptidase 2 (Mmp2), mRNA Length = 3231 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 2048 cacagcgtcaatcttttctgg 2028
>dbj|AP004696.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0475A09 Length = 143417 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 243 cactctctccatgtcaaaacgcacctcaa 271 |||||||||||| |||| ||||||||||| Sbjct: 124067 cactctctccatttcaagacgcacctcaa 124095
>dbj|AK219401.1| Mus musculus cDNA, clone:Y2G0148F17, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK204539.1| Mus musculus cDNA, clone:Y1G0148M15, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK204944.1| Mus musculus cDNA, clone:Y1G0150C11, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK204698.1| Mus musculus cDNA, clone:Y1G0149F13, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK203661.1| Mus musculus cDNA, clone:Y1G0145L13, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK203919.1| Mus musculus cDNA, clone:Y1G0146K21, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK203427.1| Mus musculus cDNA, clone:Y1G0144N08, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK202431.1| Mus musculus cDNA, clone:Y1G0141H22, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK202191.1| Mus musculus cDNA, clone:Y1G0140K15, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 307 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 73 cacagcgtcaatcttttctgg 53
>dbj|AK202079.1| Mus musculus cDNA, clone:Y1G0140F02, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK201782.1| Mus musculus cDNA, clone:Y1G0139F18, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK201746.1| Mus musculus cDNA, clone:Y1G0139D21, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK201563.1| Mus musculus cDNA, clone:Y1G0138K08, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK200774.1| Mus musculus cDNA, clone:Y1G0135O05, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 73 cacagcgtcaatcttttctgg 53
>dbj|AK200683.1| Mus musculus cDNA, clone:Y1G0135I02, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK200339.1| Mus musculus cDNA, clone:Y1G0134E03, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK199060.1| Mus musculus cDNA, clone:Y1G0130A11, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK198965.1| Mus musculus cDNA, clone:Y1G0129L12, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 73 cacagcgtcaatcttttctgg 53
>dbj|AK198537.1| Mus musculus cDNA, clone:Y1G0128H06, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK198474.1| Mus musculus cDNA, clone:Y1G0128E15, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK197653.1| Mus musculus cDNA, clone:Y1G0125L22, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK193625.1| Mus musculus cDNA, clone:Y1G0112O04, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 305 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK195150.1| Mus musculus cDNA, clone:Y1G0117I17, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK193954.1| Mus musculus cDNA, clone:Y1G0113N16, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 305 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK192709.1| Mus musculus cDNA, clone:Y1G0109L09, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK191758.1| Mus musculus cDNA, clone:Y1G0106N19, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK191300.1| Mus musculus cDNA, clone:Y1G0105H04, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK190966.1| Mus musculus cDNA, clone:Y1G0104G05, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK191078.1| Mus musculus cDNA, clone:Y1G0104M04, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 306 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK190805.1| Mus musculus cDNA, clone:Y1G0103N17, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AK190237.1| Mus musculus cDNA, clone:Y1G0102C16, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 72 cacagcgtcaatcttttctgg 52
>dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1114E07 Length = 135511 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 243 cactctctccatgtcaaaacgcacctcaa 271 |||||||||||| |||| ||||||||||| Sbjct: 451 cactctctccatttcaagacgcacctcaa 479
>gb|AC140217.3| Mus musculus BAC clone RP23-279O5 from 8, complete sequence Length = 224205 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 198580 cacagcgtcaatcttttctgg 198600
>emb|AL928571.6| Mouse DNA sequence from clone RP23-261A9 on chromosome 2, complete sequence Length = 41800 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 aggagctcattgcttccttga 504 ||||||||||||||||||||| Sbjct: 13494 aggagctcattgcttccttga 13474
>gb|M84324.1|MUSIVCOL Mus musculus type IV collagenase mRNA, complete cds Length = 2800 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 cacagcgtcaatcttttctgg 590 ||||||||||||||||||||| Sbjct: 1618 cacagcgtcaatcttttctgg 1598
>gb|AC152985.1| Mus musculus 6 BAC RP23-118B18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194298 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 aaaaatacaaaatttcttttttct 51 ||||||| |||||||||||||||| Sbjct: 100253 aaaaatagaaaatttcttttttct 100276
>gb|AC163390.2| Mus musculus chromosome 1, clone RP24-300C19, complete sequence Length = 180465 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 134614 gttctagagttttcaggtat 134633
>ref|NM_080546.2| Homo sapiens solute carrier family 44, member 1 (SLC44A1), transcript variant 2, mRNA Length = 4301 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaaaatacaaaatttcttt 46 |||||||||||||||||||| Sbjct: 4214 caaaaatacaaaatttcttt 4195
>gb|AC167180.5| Mus musculus chromosome 8, clone RP24-167E6, complete sequence Length = 170346 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 aaaatttcttttttctatct 55 |||||||||||||||||||| Sbjct: 160692 aaaatttcttttttctatct 160711
>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete sequence Length = 98913 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ccaaaaatacaaaatttctttttt 49 ||||||||||||||||| |||||| Sbjct: 72278 ccaaaaatacaaaatttttttttt 72301
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 233237 tcacagcgtcaatcttttct 233218
>gb|AC163679.3| Mus musculus BAC clone RP24-104E24 from chromosome 16, complete sequence Length = 193718 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 37292 gttctagagttttcaggtat 37311
>gb|AC158548.10| Mus musculus chromosome 5, clone RP23-258F17, complete sequence Length = 227065 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 tattccaggagctcattgcttcct 501 ||||||||||||||||| |||||| Sbjct: 107110 tattccaggagctcatttcttcct 107133
>ref|XM_583463.2| PREDICTED: Bos taurus similar to CDW92 antigen isoform 2 (LOC538887), partial mRNA Length = 2785 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaaaatacaaaatttcttt 46 |||||||||||||||||||| Sbjct: 2685 caaaaatacaaaatttcttt 2666
>gb|AC101651.6| Mus musculus chromosome 18, clone RP23-42D12, complete sequence Length = 198070 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 64055 gttctagagttttcaggtat 64036
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 265267 tcacagcgtcaatcttttct 265248
>gb|AC123748.10| Mus musculus chromosome 5, clone RP24-176M16, complete sequence Length = 158365 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 6731 gttctagagttttcaggtat 6750
>gb|AC091333.6| Mus musculus chromosome 7, clone RP23-325M1, complete sequence Length = 192111 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 107444 gttctagagttttcaggtat 107463
>gb|AE006493.1| Streptococcus pyogenes M1 GAS, section 22 of 167 of the complete genome Length = 12091 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 5282 tcacagcgtcaatcttttct 5263
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 233427 tcacagcgtcaatcttttct 233408
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 240796 tcacagcgtcaatcttttct 240777
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 237452 tcacagcgtcaatcttttct 237433
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 239873 tcacagcgtcaatcttttct 239854
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaaaatacaaaatttcttt 46 |||||||||||||||||||| Sbjct: 4852582 caaaaatacaaaatttcttt 4852563
>gb|AC120861.7| Mus musculus chromosome 5, clone RP23-60J23, complete sequence Length = 239102 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 tattccaggagctcattgcttcct 501 ||||||||||||||||| |||||| Sbjct: 236110 tattccaggagctcatttcttcct 236087
>gb|AC117610.7| Mus musculus chromosome 1, clone RP23-102B12, complete sequence Length = 191587 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 acaaaatttcttttttctat 53 |||||||||||||||||||| Sbjct: 63124 acaaaatttcttttttctat 63143
>gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome 18, complete sequence Length = 140990 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 120043 gttctagagttttcaggtat 120024
>emb|Z81489.1|CEC55A1 Caenorhabditis elegans Cosmid C55A1, complete sequence Length = 33202 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 acaaaatttcttttttctat 53 |||||||||||||||||||| Sbjct: 7750 acaaaatttcttttttctat 7769
>ref|XM_446563.1| Candida glabrata CBS138, CAGL0G04675g partial mRNA Length = 966 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 atacaaaatttcttttttct 51 |||||||||||||||||||| Sbjct: 912 atacaaaatttcttttttct 893
>gb|AC127233.2| Mus musculus BAC clone RP24-559K11 from chromosome 3, complete sequence Length = 160255 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 46665 gttctagagttttcaggtat 46684
>ref|XM_862361.1| PREDICTED: Canis familiaris similar to CDW92 antigen isoform 2, transcript variant 4 (LOC474792), mRNA Length = 4339 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaaaatacaaaatttcttt 46 |||||||||||||||||||| Sbjct: 4239 caaaaatacaaaatttcttt 4220
>ref|XM_862352.1| PREDICTED: Canis familiaris similar to CDW92 antigen isoform 2, transcript variant 3 (LOC474792), mRNA Length = 4407 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaaaatacaaaatttcttt 46 |||||||||||||||||||| Sbjct: 4307 caaaaatacaaaatttcttt 4288
>gb|AC138549.3| Mus musculus BAC clone RP23-173C1 from chromosome 7, complete sequence Length = 203651 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 107288 gttctagagttttcaggtat 107307
>gb|AC125115.3| Mus musculus BAC clone RP24-255F19 from chromosome 5, complete sequence Length = 170572 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 44928 gttctagagttttcaggtat 44909
>gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, complete sequence Length = 200282 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 199947 gttctagagttttcaggtat 199966
>gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, complete sequence Length = 152782 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 aatacaaaatttcttttttctatc 54 ||||||||||||||| |||||||| Sbjct: 29351 aatacaaaatttcttatttctatc 29328
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 236760 tcacagcgtcaatcttttct 236741
>gb|AC110917.11| Mus musculus, clone RP23-155I20, complete sequence Length = 193005 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 163586 gttctagagttttcaggtat 163605
>emb|AL354858.16| Human DNA sequence from clone RP11-367P24 on chromosome 6 Contains STSs and GSSs, complete sequence Length = 155358 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 aaaaatacaaaatttctttt 47 |||||||||||||||||||| Sbjct: 13055 aaaaatacaaaatttctttt 13074
>emb|AL161627.13| Human DNA sequence from clone RP11-287A8 on chromosome 9 Contains the 3' end of the gene for CDw92 antigen (CDW92) (CTL1), a novel gene, the CSDUFD1 gene for cystatin and DUF19 domain containing 1, the 5' end of a novel gene, part of a pseudogene similar to KIAA1272, KIAA0884, Drosophila CG5521 and rat Tulip 1 and 2 proteins and a CpG island, complete sequence Length = 138752 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaaaatacaaaatttcttt 46 |||||||||||||||||||| Sbjct: 9441 caaaaatacaaaatttcttt 9422
>emb|AL139420.13| Human DNA sequence from clone RP4-712E4 on chromosome 1p11.1-13.2 Contains the 5' end of the TBX15 gene for T-box 15, a novel gene, the 3' end of the WARS2 gene for tryptophanyl tRNA synthetase 2 (mitochondrial), the 3' end of a novel gene and a CpG island, complete sequence Length = 122122 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 acaaaatttcttttttctat 53 |||||||||||||||||||| Sbjct: 22408 acaaaatttcttttttctat 22427
>emb|AL139283.13| Human DNA sequence from clone RP4-540O3 on chromosome 1p34.3-36.11, complete sequence Length = 74237 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 atacaaaatttcttttttctatct 55 ||||||||||||| |||||||||| Sbjct: 18141 atacaaaatttctcttttctatct 18118
>gb|AC117971.7| Rattus norvegicus 7 BAC CH230-393L21 (Children's Hospital Oakland Research Institute) complete sequence Length = 80793 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 36887 gttctagagttttcaggtat 36868
>gb|AC164298.2| Mus musculus BAC clone RP23-347H20 from chromosome 14, complete sequence Length = 203395 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 96271 gttctagagttttcaggtat 96290
>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence Length = 992211 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 atacaaaatttcttttttct 51 |||||||||||||||||||| Sbjct: 444482 atacaaaatttcttttttct 444463
>gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosome 8, complete sequence Length = 182428 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 159562 gttctagagttttcaggtat 159543
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7 Length = 199615 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 ccaaaaatacaaaatttctttttt 49 ||||||||||||||||| |||||| Sbjct: 156824 ccaaaaatacaaaatttttttttt 156801
>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence Length = 127914 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 aagtccccaaaaatacaaaa 39 |||||||||||||||||||| Sbjct: 45371 aagtccccaaaaatacaaaa 45390
>emb|AL604062.15| Mouse DNA sequence from clone RP23-104B6 on chromosome 11 Contains a novel gene, a ferritin light chain (Ftl) pseudogene and a CpG island, complete sequence Length = 216510 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 72954 gttctagagttttcaggtat 72973
>emb|BX324113.14| Zebrafish DNA sequence from clone DKEYP-68B7 in linkage group 2, complete sequence Length = 188968 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 caactaacacaacacagaacaata 85 ||||||||| |||||||||||||| Sbjct: 14778 caactaacataacacagaacaata 14801
>gb|AC153149.4| Mus musculus BAC clone RP23-176O2 from chromosome 3, complete sequence Length = 206540 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 79518 gttctagagttttcaggtat 79499
>gb|AE009973.1| Streptococcus pyogenes strain MGAS8232, section 21 of 173 of the complete genome Length = 12001 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 1124 tcacagcgtcaatcttttct 1105
>dbj|AK077028.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932416E17 product:unclassifiable, full insert sequence Length = 3380 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 2426 gttctagagttttcaggtat 2445
>gb|AC000092.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 98c4 In DGCR Region, complete sequence Length = 38715 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ataccaactaacacaacaca 77 |||||||||||||||||||| Sbjct: 6630 ataccaactaacacaacaca 6649
>gb|AC025262.27|AC025262 Homo sapiens 12 BAC RP11-629N8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167276 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 486 gagctcattgcttccttgagatga 509 ||||||| |||||||||||||||| Sbjct: 123071 gagctcactgcttccttgagatga 123048
>gb|AC115748.8| Mus musculus chromosome 1, clone RP23-13N24, complete sequence Length = 202092 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 199861 gttctagagttttcaggtat 199842
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 22474750 acccgacgatcatcagccag 22474769 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 2377982 acccgacgatcatcagccag 2378001 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 2373327 acccgacgatcatcagccag 2373346 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 2335860 acccgacgatcatcagccag 2335841
>gb|AC159292.3| Mus musculus BAC clone RP23-290D9 from chromosome 10, complete sequence Length = 224627 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 125153 gttctagagttttcaggtat 125134
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 224318 tcacagcgtcaatcttttct 224299
>gb|AC154353.1| Mus musculus BAC clone RP24-547N14 from chromosome 12, complete sequence Length = 249825 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 56546 gttctagagttttcaggtat 56527
>dbj|AK195892.1| Mus musculus cDNA, clone:Y1G0119P16, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034187, based on BLAT search Length = 304 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 acagcgtcaatcttttctgg 590 |||||||||||||||||||| Sbjct: 71 acagcgtcaatcttttctgg 52
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tcacagcgtcaatcttttct 588 |||||||||||||||||||| Sbjct: 218228 tcacagcgtcaatcttttct 218209
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036F10 Length = 149415 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 9440 acccgacgatcatcagccag 9459 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 4785 acccgacgatcatcagccag 4804
>dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0498C03 Length = 146394 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 111883 acccgacgatcatcagccag 111902
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20 Length = 147363 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 99783 acccgacgatcatcagccag 99802 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 95128 acccgacgatcatcagccag 95147 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 57661 acccgacgatcatcagccag 57642
>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 151468 gttctagagttttcaggtat 151449
>dbj|AK000109.1| Homo sapiens cDNA FLJ20102 fis, clone COL04783 Length = 535 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaaaatacaaaatttcttt 46 |||||||||||||||||||| Sbjct: 452 caaaaatacaaaatttcttt 433
>dbj|AK100191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P11, full insert sequence Length = 1659 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 1225 acccgacgatcatcagccag 1244
>dbj|AK072583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132G06, full insert sequence Length = 2078 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 1260 acccgacgatcatcagccag 1279
>dbj|AK070509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054E18, full insert sequence Length = 1870 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acccgacgatcatcagccag 306 |||||||||||||||||||| Sbjct: 1259 acccgacgatcatcagccag 1278
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 acaacacagaacaatatata 89 |||||||||||||||||||| Sbjct: 116261 acaacacagaacaatatata 116242
>gb|AC154386.2| Mus musculus BAC clone RP23-27A13 from 13, complete sequence Length = 170110 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agaccaaactaacaaatctg 136 |||||||||||||||||||| Sbjct: 166993 agaccaaactaacaaatctg 167012
>emb|CR931726.9| Zebrafish DNA sequence from clone DKEYP-38E8 in linkage group 11, complete sequence Length = 131097 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 cagctcatcgatttctgctt 550 |||||||||||||||||||| Sbjct: 29759 cagctcatcgatttctgctt 29740
>gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 224716 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 88916 gttctagagttttcaggtat 88935
>gb|AC102764.12| Mus musculus chromosome 8, clone RP24-266L17, complete sequence Length = 185178 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 aaaatttcttttttctatct 55 |||||||||||||||||||| Sbjct: 80200 aaaatttcttttttctatct 80219
>emb|AL772152.16| Mouse DNA sequence from clone RP23-157O1 on chromosome 4, complete sequence Length = 195937 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 106987 gttctagagttttcaggtat 106968
>gb|AC126931.4| Mus musculus BAC clone RP23-389M9 from 9, complete sequence Length = 189423 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 166206 gttctagagttttcaggtat 166187
>gb|U00062.1|YSCH8179 Saccharomyces cerevisiae chromosome VIII cosmid 8179 Length = 44113 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 aaaaatacaaaatttcttttttct 51 |||||| ||||||||||||||||| Sbjct: 37928 aaaaatgcaaaatttcttttttct 37905
>gb|AC154662.2| Mus musculus BAC clone RP24-279F20 from chromosome 13, complete sequence Length = 170831 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agaccaaactaacaaatctg 136 |||||||||||||||||||| Sbjct: 87287 agaccaaactaacaaatctg 87306
>emb|AL672299.14| Mouse DNA sequence from clone RP23-287A19 on chromosome X, complete sequence Length = 131629 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 108213 gttctagagttttcaggtat 108194
>emb|AL807775.8| Mouse DNA sequence from clone RP23-149H3 on chromosome X, complete sequence Length = 185599 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gttctagagttttcaggtat 480 |||||||||||||||||||| Sbjct: 159114 gttctagagttttcaggtat 159133
>emb|AJ420812.1|HSA420812 Homo sapiens mRNA for choline transporter-like protein 1, splice variant a (CTL1 gene) Length = 4301 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaaaatacaaaatttcttt 46 |||||||||||||||||||| Sbjct: 4214 caaaaatacaaaatttcttt 4195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,474,500 Number of Sequences: 3902068 Number of extensions: 7474500 Number of successful extensions: 249969 Number of sequences better than 10.0: 136 Number of HSP's better than 10.0 without gapping: 137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 249373 Number of HSP's gapped (non-prelim): 596 length of query: 635 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 612 effective length of database: 17,143,297,704 effective search space: 10491698194848 effective search space used: 10491698194848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
