ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasde10 |
|---|---|
| Clone Library Name | barley_pub |
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 33.5 bits (75), Expect = 0.61 Identities = 35/120 (29%), Positives = 44/120 (36%), Gaps = 6/120 (5%) Frame = +2 Query: 335 ACGSIGETATGGHSETKQRRDRASSRGQGPRRGSPVPGAGALNEAPAATTRTITWGC*QT 514 A S+ TA GG SE + RDR G + V G G + TT T G Sbjct: 106 ASASVFATAAGGSSERSRNRDRPYRNG-----SASVQGGGINSSNTTTTTAACTAG---G 157 Query: 515 AWLGSTCTGGAGLLGFESTRSWGAVPQQAAPSKPQTSLELQAWKAR------WAHKALAA 676 + G+ TG GL+G G VPQ ++ AR W A AA Sbjct: 158 SGSGAIGTGTGGLVG----SGPGGVPQALGDRSSTQNIHQNHQSARVAPPQSWYEAATAA 213
>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) Length = 1424 Score = 32.7 bits (73), Expect = 1.0 Identities = 21/76 (27%), Positives = 33/76 (43%) Frame = +2 Query: 374 SETKQRRDRASSRGQGPRRGSPVPGAGALNEAPAATTRTITWGC*QTAWLGSTCTGGAGL 553 +E K++R + G G+ PG A AP +T + G+ GG G+ Sbjct: 606 AELKEKRKSGGATSSGAATGATTPGGAA---APGSTGNSSPGTPGGLGGPGAVGAGGPGV 662 Query: 554 LGFESTRSWGAVPQQA 601 +G + G VPQQ+ Sbjct: 663 MGGAESAPAGTVPQQS 678
>GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific 2-like 1)| (GAS2-related protein on chromosome 22) (GAR22 protein) Length = 681 Score = 32.3 bits (72), Expect = 1.4 Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 4/107 (3%) Frame = +2 Query: 341 GSIGETATGGHSETKQRRDRASSRGQGPRRGSPVPGAGALNEAP----AATTRTITWGC* 508 G G+ G + R+ + GSP PG G +AP A T + TW Sbjct: 575 GKCGQPGDSGRTANGLPGPRSQALSSSSDEGSPCPGMGGPLDAPGSPLACTEPSRTW--- 631 Query: 509 QTAWLGSTCTGGAGLLGFESTRSWGAVPQQAAPSKPQTSLELQAWKA 649 G + + R +P P +P EL W A Sbjct: 632 -----------ARGRMDTQPDRKPSRIPTPRGPRRPSGPAELGTWHA 667
>GUND_CELFI (P50400) Endoglucanase D precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) Length = 747 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/72 (31%), Positives = 29/72 (40%) Frame = +2 Query: 413 GQGPRRGSPVPGAGALNEAPAATTRTITWGC*QTAWLGSTCTGGAGLLGFESTRSWGAVP 592 G P +P G P A+T +TW ST TGG+G+ G+E R V Sbjct: 446 GGTPDTTAPTAPTGLRAGTPTASTVPLTWSA-------STDTGGSGVAGYEVYRGTTLVG 498 Query: 593 QQAAPSKPQTSL 628 A S T L Sbjct: 499 TTTATSYTVTGL 510 Score = 29.6 bits (65), Expect = 8.8 Identities = 23/75 (30%), Positives = 31/75 (41%) Frame = +2 Query: 404 SSRGQGPRRGSPVPGAGALNEAPAATTRTITWGC*QTAWLGSTCTGGAGLLGFESTRSWG 583 ++ G G VP G P AT+ +TW ST TGG+G+ G+E R Sbjct: 540 TAAGGGDVTAPSVP-TGLTAGTPTATSVPLTW-------TASTDTGGSGVTGYEVYRGST 591 Query: 584 AVPQQAAPSKPQTSL 628 V + S T L Sbjct: 592 LVARPTGTSHTVTGL 606
>RFX5_HUMAN (P48382) DNA-binding protein RFX5 (Regulatory factor X subunit 5)| Length = 616 Score = 32.0 bits (71), Expect = 1.8 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 362 TGGHSETKQRRDRASSRGQGPRRGSPVPGAGALNEAPAATTRTITWG 502 T ++ K+ R R S G G R +P+ A A+ A ++ TWG Sbjct: 458 TASDAKRKRGRPRKKSGGSGERNSTPLKSAAAMESAQSSRLPWETWG 504
>JPH4_HUMAN (Q96JJ6) Junctophilin-4 (Junctophilin-like 1 protein)| Length = 628 Score = 25.4 bits (54), Expect(2) = 2.4 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%) Frame = +2 Query: 386 QRRDRASSRGQGPRRGSPVPG-----AGALNE 466 + D A +G GPR GSP+ G +G+L E Sbjct: 513 EAEDEAGMQGPGPRDGSPLLGGCSDSSGSLRE 544 Score = 24.6 bits (52), Expect(2) = 2.4 Identities = 12/37 (32%), Positives = 15/37 (40%) Frame = +1 Query: 550 LARLRIHSELGRSPTTGCSIEATNEPGAPGLEGEVGA 660 +A L + R P GC E EP A + GA Sbjct: 567 IAMLVLRGSSSRGPDAGCLTEELGEPAATERPAQPGA 603
>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1717 Score = 25.0 bits (53), Expect(2) = 2.9 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 398 RASSRGQGPRRGSPVPGAGALNEAPAA 478 RA G+ RRG+P P AG P A Sbjct: 86 RAGGAGRRRRRGAPQPIAGGAAPVPGA 112 Score = 24.6 bits (52), Expect(2) = 2.9 Identities = 13/46 (28%), Positives = 20/46 (43%) Frame = +1 Query: 538 RGRWLARLRIHSELGRSPTTGCSIEATNEPGAPGLEGEVGAQGAGC 675 RGR L + S ++ + A++ PGA GL A + C Sbjct: 123 RGRLKRNLSAAAAAASSSSSSSAAAASHSPGAAGLPASCSASASLC 168
>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 44) (DIS3 protein homolog) Length = 958 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -3 Query: 618 CGFDGAACCGTAPQLRVDSKPSKPAPPVHVDPSQAVCQQPHVMV 487 CG G A CG A + +P P DP+ +VC QPH ++ Sbjct: 31 CGAPGCAACGGAHE----GPALEPQPQ---DPASSVCPQPHYLL 67
>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)| Length = 1186 Score = 30.4 bits (67), Expect = 5.2 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Frame = +2 Query: 338 CGSIGETATGGHSETKQRRDRASSRGQGPRRGSPVPG-AGALNEAPAATTRTITWGC*QT 514 CG ++TG S T D A S G GS G + + ++T + + T Sbjct: 891 CGDGSVSSTGSSSNTDASTDLAGSSTSG---GSSTYGYSSDSRDGSVSSTGSSSNTDAST 947 Query: 515 AWLGSTCTGGAGLLGFESTRSWGAVPQQAAPSKPQTSLEL 634 GS+ +GG+ G+ S G+V + S S +L Sbjct: 948 DLAGSSTSGGSSTYGYSSNSRDGSVSSTGSSSNTDASTDL 987
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 25.4 bits (54), Expect(2) = 5.4 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -2 Query: 583 APTPSGFEAEQASAPCTCRSEPSCLSAAPCDGARCG 476 AP G + ASAPC ++P C PC G G Sbjct: 124 APGAPGNPGKGASAPCEPVTQPPC---QPCPGGPPG 156 Score = 23.5 bits (49), Expect(2) = 5.4 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -1 Query: 668 APCAPTSPSRPGAPGS 621 +P P P +PGAPG+ Sbjct: 112 SPGKPGKPGKPGAPGA 127
>MURG_CHRVO (Q7NPZ9) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 360 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -3 Query: 672 ASALCAHLAFQAWSSRLVCGFDGAACCGTAPQLRVDSKP 556 A L ++ A ++S+LVCGFDG+A G P+ V P Sbjct: 126 AGLLLSNKALLPFASKLVCGFDGSAARG--PKALVTGNP 162
>GSC_HUMAN (P56915) Homeobox protein goosecoid| Length = 257 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Frame = -3 Query: 606 GAACCGTAPQLRVDSKPSKPAPPVHVDP-SQAVCQQPHVMV 487 G ACCG P L P PP + P S V PH M+ Sbjct: 96 GPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPVPHQML 136
>GSC_MOUSE (Q02591) Homeobox protein goosecoid| Length = 256 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Frame = -3 Query: 606 GAACCGTAPQLRVDSKPSKPAPPVHVDP-SQAVCQQPHVMV 487 G ACCG P L P PP + P S V PH M+ Sbjct: 96 GPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPVPHQML 136
>SOX8_MOUSE (Q04886) Transcription factor SOX-8| Length = 464 Score = 30.0 bits (66), Expect = 6.7 Identities = 18/65 (27%), Positives = 30/65 (46%) Frame = +2 Query: 437 PVPGAGALNEAPAATTRTITWGC*QTAWLGSTCTGGAGLLGFESTRSWGAVPQQAAPSKP 616 P+ G AL P+ T + ++G + G+T G + + + S A P +A P +P Sbjct: 289 PLNGHSALPTEPSQATASGSYGGASYSHSGATGIGASPVWAHKGAPSASASPTEAGPLRP 348 Query: 617 QTSLE 631 Q E Sbjct: 349 QIKTE 353 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,602,737 Number of Sequences: 219361 Number of extensions: 1833907 Number of successful extensions: 9914 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 7140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9850 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
