ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasde10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 268 2e-68
2gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 262 1e-66
3gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 260 5e-66
4gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans... 252 1e-63
5gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term... 252 1e-63
6gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 252 1e-63
7gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 244 3e-61
8emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroel... 244 3e-61
9dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-li... 244 3e-61
10gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 228 2e-56
11gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 222 1e-54
12gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transpor... 216 7e-53
13gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposo... 212 1e-51
14emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 212 1e-51
15gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg... 131 3e-27
16gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rp... 109 1e-20
17gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retr... 90 1e-14
18gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotra... 78 4e-11
19gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula ... 64 6e-07
20gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotra... 64 6e-07
21gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposo... 64 6e-07
22gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposo... 64 6e-07
23gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotra... 56 2e-04
24gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotra... 56 2e-04
25gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotra... 56 2e-04
26gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransp... 56 2e-04
27gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransp... 56 2e-04
28gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkul... 54 6e-04
29gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 ... 54 6e-04
30gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransp... 54 6e-04
31gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotran... 54 6e-04
32gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposo... 54 6e-04
33gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposo... 54 6e-04
34gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotra... 54 6e-04
35gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposo... 48 0.038
36gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposo... 48 0.038
37gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c... 46 0.15
38gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, gen... 46 0.15
39gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108... 46 0.15
40gb|AY957953.1| Homo sapiens cytochrome P450, family 19, subfamil... 46 0.15
41gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, com... 42 2.3
42gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, com... 42 2.3
43gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 9.3
44gb|AC124550.4| Mus musculus BAC clone RP23-211F21 from chromosom... 40 9.3
45emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 40 9.3
46gb|AC129919.9| Homo sapiens chromosome 17, clone RP13-1277B16, c... 40 9.3
47gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, comp... 40 9.3
48dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 9.3
49gb|AC012238.7| Homo sapiens, clone RP11-16F4, complete sequence 40 9.3
50gb|AC027601.25| Homo sapiens chromosome 17, clone RP11-455O6, co... 40 9.3
51gb|AC004822.1|AC004822 Homo sapiens PAC clone RP1-170D19 from Xq... 40 9.3
52gb|AF091121.1|AF091121 Tripedalia cystophora retinoic acid X rec... 40 9.3
53gb|AY168508.1| Macropus rufus oocyte maturation factor Mos (c-mo... 40 9.3 
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  268 bits (135), Expect = 2e-68
 Identities = 162/169 (95%), Gaps = 2/169 (1%)
 Strand = Plus / Plus

                                                                          
Query: 2      agagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatna 59
              |||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||| |
Sbjct: 102777 agagttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatca 102836

                                                                          
Query: 60     tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgt 119
              |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 102837 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgt 102896

                                                               
Query: 120    ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
              |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102897 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 102945



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                          
Query: 255    ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
              |||||||||||| |||||||||||| |||||||||||  | |||||| ||||||| ||||
Sbjct: 104340 ctgagatcccgcctggaagaagaacaactccgtgaagcagacgaaccgacgtagtcgaac 104399

                                     
Query: 315    gggtcctcacattccgacacgct 337
              ||||||||||| |||| ||||||
Sbjct: 104400 gggtcctcacaatccggcacgct 104422



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                     
Query: 203    caaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
              |||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 102971 caaatgaacaatcaacgcgctcacgtcaaataacctttacctgtacctgcaactg 103025
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  262 bits (132), Expect = 1e-66
 Identities = 162/170 (95%), Gaps = 2/170 (1%)
 Strand = Plus / Minus

                                                                          
Query: 1      tagagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatn 58
              ||||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||| 
Sbjct: 327162 tagagttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatc 327103

                                                                          
Query: 59     atcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacg 118
              ||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||
Sbjct: 327102 atcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaagaagaacgacg 327043

                                                                
Query: 119    tccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327042 tccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 326993



 Score =  218 bits (110), Expect = 2e-53
 Identities = 157/170 (92%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                          
Query: 1      tagagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatn 58
              ||||||||||||||||||||| | ||||||||||||||  ||||||||||||||||    
Sbjct: 131559 tagagttggcttacactcgccacaagctacatcagagtcacatcagtacattacat---c 131503

                                                                          
Query: 59     atcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacg 118
              ||||||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||
Sbjct: 131502 atcaagagtaagagcagggtccgactacggaagaaaacaaacgagaaaagaagaacgacg 131443

                                                                
Query: 119    tccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
              |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 131442 tccatccttgctatcccaggctgccgccctggaacccatcctagatcgat 131393



 Score =  133 bits (67), Expect = 8e-28
 Identities = 82/87 (94%)
 Strand = Plus / Minus

                                                                          
Query: 255    ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
              |||||||||| |||||||||||||| |||||||||||| | |||||||||||||| ||||
Sbjct: 325599 ctgagatcccacttggaagaagaacaactccgtgaagtagacgaaccaacgtagtcgaac 325540

                                         
Query: 315    gggtcctcacattccgacacgcttgcg 341
              |||||||||||||||||||||||||||
Sbjct: 325539 gggtcctcacattccgacacgcttgcg 325513



 Score =  101 bits (51), Expect = 3e-18
 Identities = 57/59 (96%)
 Strand = Plus / Minus

                                                                         
Query: 199    actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
              |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 326971 actccaaatgaacaatcaacacgctcgcatcaagtaacctttacctgtacctgcaactg 326913



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                          
Query: 255    ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
              |||||||||||||||||||||||| | ||||||||||    |||||| ||||||| ||||
Sbjct: 130044 ctgagatcccgcttggaagaagaatgtctccgtgaagcacacgaaccgacgtagtcgaac 129985

                                           
Query: 315    gggtcctcacattccgacacgcttgcgga 343
              ||||||||||| |||||||||||||||||
Sbjct: 129984 gggtcctcaca-tccgacacgcttgcgga 129957



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                         
Query: 199    actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
              |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 131374 actccaaatgaacaatcaacgcgctcacgtcaagtgacctttacatgtacctgcaactg 131316



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 79/89 (88%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                          
Query: 255    ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
              |||||||||||||||||||||||| | ||||||||||    |||||| ||||||| ||| 
Sbjct: 177377 ctgagatcccgcttggaagaagaatgtctccgtgaagaacacgaaccgacgtagtcgaat 177318

                                           
Query: 315    gggtcctcacattccgacacgcttgcgga 343
              ||||||||||| |||||||||||||||||
Sbjct: 177317 gggtcctcaca-tccgacacgcttgcgga 177290
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  260 bits (131), Expect = 5e-66
 Identities = 161/169 (95%), Gaps = 2/169 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     agagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatna 59
             |||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||| |
Sbjct: 64845 agagttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatca 64904

                                                                         
Query: 60    tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgt 119
             |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct: 64905 tcaagagtaagagcagggtccgtctacggacgaaaacaaacgacaaaagaagaacgacgt 64964

                                                              
Query: 120   ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64965 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 65013



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 81/90 (90%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                         
Query: 255   ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
             ||||||||| |||||||||||||| | ||||||||||  | |||||| ||||||| ||||
Sbjct: 66389 ctgagatcctgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 66448

                                           
Query: 315   gggtcctcacattccgacacgcttgcggaa 344
             ||||||||||| ||||||||||||||||||
Sbjct: 66449 gggtcctcaca-tccgacacgcttgcggaa 66477



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                        
Query: 199   actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
             |||||||||||||||||||| ||||||| |||||||| |||  ||||||||||||||||
Sbjct: 65038 actccaaatgaacaatcaacacgctcgcatcaagtaatcttagcctgtacctgcaactg 65096
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>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score =  252 bits (127), Expect = 1e-63
 Identities = 160/169 (94%), Gaps = 2/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2    agagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatna 59
            |||||||||||||||||||| | ||||||||||||||  |||||||||||||||| || |
Sbjct: 4195 agagttggcttacactcgccacaagctacatcagagtcacatcagtacattacatcatca 4136

                                                                        
Query: 60   tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgt 119
            |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct: 4135 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacat 4076

                                                             
Query: 120  ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 4027



 Score =  109 bits (55), Expect = 1e-20
 Identities = 58/59 (98%)
 Strand = Plus / Minus

                                                                       
Query: 199  actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4005 actccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 3947



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
            |||||||||||||||||||||||| | ||||||||||  | |||||| ||||||| ||||
Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596

                                          
Query: 315  gggtcctcacattccgacacgcttgcggaa 344
            | ||||||||| |||| |||||||||||||
Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaa 2566
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>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
            and complete sequences
          Length = 11820

 Score =  252 bits (127), Expect = 1e-63
 Identities = 160/169 (94%), Gaps = 2/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2    agagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatna 59
            |||||||||||||||||||| | ||||||||||||||  |||||||||||||||| || |
Sbjct: 4195 agagttggcttacactcgccacaagctacatcagagtcacatcagtacattacatcatca 4136

                                                                        
Query: 60   tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgt 119
            |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct: 4135 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacat 4076

                                                             
Query: 120  ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 4027



 Score =  230 bits (116), Expect = 5e-57
 Identities = 159/170 (93%), Gaps = 3/170 (1%)
 Strand = Plus / Minus

                                                                         
Query: 2     agagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatna 59
             |||||||||||||||||||| | || |||||||||||  ||||||||||||||||||| |
Sbjct: 11733 agagttggcttacactcgccacaagttacatcagagtcacatcagtacattacataatca 11674

                                                                         
Query: 60    tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaag-aagaacgacg 118
             |||||||||||||||||||| ||||||||||||||||||||||  |||  ||||||||||
Sbjct: 11673 tcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaaataagaacgacg 11614

                                                               
Query: 119   tccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11613 tccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 11564



 Score =  117 bits (59), Expect = 5e-23
 Identities = 59/59 (100%)
 Strand = Plus / Minus

                                                                        
Query: 199   actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11545 actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 11487



 Score =  113 bits (57), Expect = 8e-22
 Identities = 82/89 (92%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                         
Query: 256   tgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaacg 315
             |||||||||||||||||||||||| |||| ||| ||||||| ||||| |||||| |||||
Sbjct: 10185 tgagatcccgcttggaagaagaacaactcggtggagtcggcaaaccatcgtagtcgaacg 10126

                                          
Query: 316   ggtcctcacattccgacacgcttgcggaa 344
             ||||||||| |||||||||||||||||||
Sbjct: 10125 ggtcctcac-ttccgacacgcttgcggaa 10098



 Score =  109 bits (55), Expect = 1e-20
 Identities = 58/59 (98%)
 Strand = Plus / Minus

                                                                       
Query: 199  actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4005 actccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 3947



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
            |||||||||||||||||||||||| | ||||||||||  | |||||| ||||||| ||||
Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596

                                          
Query: 315  gggtcctcacattccgacacgcttgcggaa 344
            | ||||||||| |||| |||||||||||||
Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaa 2566
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>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score =  252 bits (127), Expect = 1e-63
 Identities = 160/169 (94%), Gaps = 2/169 (1%)
 Strand = Plus / Minus

                                                                         
Query: 2     agagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatna 59
             |||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||| |
Sbjct: 11074 agagttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatca 11015

                                                                         
Query: 60    tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgt 119
             |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 11014 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgt 10955

                                                              
Query: 120   ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
             ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 10954 ccatccttgctatccgagggtgccggcctggaacccatcctagatcgat 10906



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
            |||||||||||||||||||| ||| | ||||||||||  | |||||| ||||||| ||||
Sbjct: 9538 ctgagatcccgcttggaagaggaatgcctccgtgaagcagacgaaccgacgtagtcgaac 9479

                                      
Query: 315  gggtcctcacattccgacacgcttgc 340
            ||||||||||| ||||||||||||||
Sbjct: 9478 gggtcctcaca-tccgacacgcttgc 9454



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                        
Query: 199   actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
             |||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||
Sbjct: 10884 actccaaatgaacaatcaacgcgctcacgtgaagtaccatttacctgtacctgcaactg 10826
to top
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score =  244 bits (123), Expect = 3e-61
 Identities = 159/169 (94%), Gaps = 2/169 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     agagttggcttacactcgcccgag-ctacatcagagtn-catcagtacattacataatna 59
             ||||||||||||||||||||  || ||||||||||||  ||| ||| ||||||||||| |
Sbjct: 68149 agagttggcttacactcgccacaggctacatcagagtcacataagttcattacataatca 68208

                                                                         
Query: 60    tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgt 119
             |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 68209 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgt 68268

                                                              
Query: 120   ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68269 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 68317



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                         
Query: 255   ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
             |||||||||||||||||||||||| | ||||||||||  | |||||| ||||||| ||||
Sbjct: 69688 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 69747

                                    
Query: 315   gggtcctcacattccgacacgct 337
             ||||||||||| |||| ||||||
Sbjct: 69748 gggtcctcacaatccggcacgct 69770



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                        
Query: 199   actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
             ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||
Sbjct: 68336 actccaaatgaacaatcaaagcgctcgcgtcaagtaaccattacgtgtacctgcaactg 68394
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>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement
          Length = 13271

 Score =  244 bits (123), Expect = 3e-61
 Identities = 156/165 (94%), Gaps = 2/165 (1%)
 Strand = Plus / Minus

                                                                         
Query: 6     ttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatnatcaa 63
             |||||||||||||||| | ||||||||||||||  ||||| ||||||||||||  |||||
Sbjct: 10551 ttggcttacactcgccacaagctacatcagagtcacatcaatacattacataaacatcaa 10492

                                                                         
Query: 64    gagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccat 123
             |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 10491 gagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccat 10432

                                                          
Query: 124   ccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10431 ccttgctatcccaggctgccggcctggaacccatcctagatcgat 10387



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                        
Query: 199   actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
             ||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 10365 actccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaactg 10307
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>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement
            BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR
            sequence
          Length = 3130

 Score =  244 bits (123), Expect = 3e-61
 Identities = 156/165 (94%), Gaps = 2/165 (1%)
 Strand = Plus / Minus

                                                                        
Query: 6    ttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatnatcaa 63
            |||||||||||||||| | ||||||||||||||  ||||| ||||||||||||  |||||
Sbjct: 2994 ttggcttacactcgccacaagctacatcagagtcacatcaatacattacataaacatcaa 2935

                                                                        
Query: 64   gagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccat 123
            |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2934 gagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccat 2875

                                                         
Query: 124  ccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2874 ccttgctatcccaggctgccggcctggaacccatcctagatcgat 2830



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                       
Query: 199  actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
            ||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 2808 actccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaactg 2750
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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score =  228 bits (115), Expect = 2e-56
 Identities = 157/169 (92%), Gaps = 2/169 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     agagttggcttacactcgcccga-gctacatcagagtn-catcagtacattacataatna 59
             ||||||||||||||||||||  | |||||||||||||  | ||||||||||||||||  |
Sbjct: 16375 agagttggcttacactcgccaaaagctacatcagagtcgcttcagtacattacataaaca 16434

                                                                         
Query: 60    tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgt 119
             | |||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 16435 tgaagagtaagagcagggtccgactacagacgaaaacaaacgacaaaagaagaacgacgt 16494

                                                              
Query: 120   ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16495 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 16543



 Score =  117 bits (59), Expect = 5e-23
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                        
Query: 199   actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16565 actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 16623



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                         
Query: 255   ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
             |||||||||||||||||||||||| | || |||||||  | |||||| ||||||| ||||
Sbjct: 17918 ctgagatcccgcttggaagaagaatgcctgcgtgaagctgacgaaccgacgtagtcgaac 17977

                                    
Query: 315   gggtcctcacattccgacacgct 337
             ||||||||||| |||| ||||||
Sbjct: 17978 gggtcctcacaatccggcacgct 18000
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score =  222 bits (112), Expect = 1e-54
 Identities = 155/166 (93%), Gaps = 3/166 (1%)
 Strand = Plus / Plus

                                                                        
Query: 5    gttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatnatca 62
            ||||||||||||||||| | ||||||||||||||  | ||||||||||||||||| ||||
Sbjct: 3317 gttggcttacactcgccacaagctacatcagagtcacctcagtacattacataatcatca 3376

                                                                        
Query: 63   agagtaagagcagggtctgactacggacgaaaa-caaacgaccaaagaagaacgacgtcc 121
            ||||||||||||||||| ||||| ||| ||||| |||||||| |||||||||||||||||
Sbjct: 3377 agagtaagagcagggtccgactatggatgaaaaacaaacgacaaaagaagaacgacgtcc 3436

                                                          
Query: 122  atccttgctatcccaggctgccggcctggaacccatcctagatcga 167
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3437 atccttgctatcccaggctgccggcctggaacccatcctagatcga 3482



 Score =  107 bits (54), Expect = 5e-20
 Identities = 82/90 (91%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                        
Query: 255  ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
            |||||||||||||||||||||||| | ||||||||||  | |||||| ||||||| ||||
Sbjct: 4859 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 4918

                                          
Query: 315  gggtcctcacattccgacacgcttgcggaa 344
            ||||||||||| ||||||||||||||||||
Sbjct: 4919 gggtcctcaca-tccgacacgcttgcggaa 4947



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                       
Query: 199  actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
            |||||| ||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 3505 actccagatgaacaatcaacgcgctcacgtcgaataacctttacctgtacctgcaactg 3563
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>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene,
            complete cds
          Length = 6561

 Score =  216 bits (109), Expect = 7e-53
 Identities = 148/159 (93%), Gaps = 2/159 (1%)
 Strand = Plus / Plus

                                                                        
Query: 8    ggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatnatcaaga 65
            |||||||||||||| | ||||||||||||||  ||||||||||||||||||| |||||| 
Sbjct: 2553 ggcttacactcgccacaagctacatcagagtcacatcagtacattacataatcatcaagg 2612

                                                                        
Query: 66   gtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcc 125
            |||||||||||||| |||||||||||||||||| |||  |||||||||||||||||||||
Sbjct: 2613 gtaagagcagggtccgactacggacgaaaacaaccgagaaaagaagaacgacgtccatcc 2672

                                                   
Query: 126  ttgctatcccaggctgccggcctggaacccatcctagat 164
            |||||||||||||||||||| ||||||||||||||||||
Sbjct: 2673 ttgctatcccaggctgccggtctggaacccatcctagat 2711



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                       
Query: 199  actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
            ||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 2764 actccaaataaacaatccacgcgctcgcgtcaagtaacctttacatgtacttgcaactg 2822
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>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score =  212 bits (107), Expect = 1e-51
 Identities = 153/165 (92%), Gaps = 8/165 (4%)
 Strand = Plus / Minus

                                                                        
Query: 6    ttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatnatcaa 63
            |||||||||||||||| | ||||||||||||||  ||||||||||||||||||| |||||
Sbjct: 4185 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatcatcaa 4126

                                                                        
Query: 64   gagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccat 123
            |||||||||||||||| |||||||||||||||||||||     |||| ||||||||||||
Sbjct: 4125 gagtaagagcagggtccgactacggacgaaaacaaacg-----agaa-aacgacgtccat 4072

                                                         
Query: 124  ccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4071 ccttgctatcccaggctgccggcctggaacccatcctagatcgat 4027



 Score =  109 bits (55), Expect = 1e-20
 Identities = 58/59 (98%)
 Strand = Plus / Minus

                                                                       
Query: 199  actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4005 actccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 3947



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
            |||||||||||||||||||||||| | ||||||||||  | |||||| ||||||| ||||
Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596

                                          
Query: 315  gggtcctcacattccgacacgcttgcggaa 344
            | ||||||||| |||| |||||||||||||
Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaa 2566
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  212 bits (107), Expect = 1e-51
 Identities = 156/169 (92%), Gaps = 3/169 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     agagttggcttacactcgcc-cgagctacatcagagtn-catcagtacattacataatna 59
             ||||||||||||||||| || | ||||||||||||||  ||||||||||||||||||| |
Sbjct: 37285 agagttggcttacactcaccacaagctacatcagagtcacatcagtacattacataatca 37344

                                                                         
Query: 60    tcaagagtaagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgt 119
             |||||||||||||| ||||| ||||||||||||||||||||||  |||  | ||||||||
Sbjct: 37345 tcaagagtaagagcggggtccgactacggacgaaaacaaacgagaaaatga-aacgacgt 37403

                                                              
Query: 120   ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 168
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37404 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 37452



 Score =  107 bits (54), Expect = 5e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                         
Query: 255   ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
             |||||||||||||||||||||||| | ||||||||||  | |||||  ||||||| ||||
Sbjct: 38836 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaactgacgtagtcgaac 38895

                                           
Query: 315   gggtcctcacattccgacacgcttgcggaa 344
             ||||||||||| ||||||||||||||||||
Sbjct: 38896 gggtcctcacaatccgacacgcttgcggaa 38925



 Score =  101 bits (51), Expect = 3e-18
 Identities = 57/59 (96%)
 Strand = Plus / Plus

                                                                        
Query: 199   actccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 257
             |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 37474 actcaaaatgaacaatcagcgcgctcgcgtcaagtaacctttacctgtacctgcaactg 37532
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>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic
            sequence
          Length = 3124

 Score =  131 bits (66), Expect = 3e-27
 Identities = 92/100 (92%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                        
Query: 68   aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
            |||||||||||| ||||||| ||||||||||||||  ||||||   ||||||||||||||
Sbjct: 2336 aagagcagggtccgactacgaacgaaaacaaacgataaaagaa---cgacgtccatcctt 2280

                                                    
Query: 128  gctatcccaggctgccggcctggaacccatcctagatcga 167
            ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2279 gctatcccaggctgccgacctggaacccatcctagatcga 2240



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                       
Query: 255 ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
           ||||||||| ||||||||||||||||| |||||||||  | |||||||||||||  ||||
Sbjct: 865 ctgagatcctgcttggaagaagaacgaatccgtgaagcagacgaaccaacgtagccgaac 806

                                      
Query: 315 gggtcctcacattccgacacgcttgcg 341
           || ||||||||||||||||||||||||
Sbjct: 805 ggttcctcacattccgacacgcttgcg 779
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>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic
            sequence
          Length = 7321

 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
            ||||||||| ||||||||||||||||| |||||||||  | |||||||||||||  ||||
Sbjct: 6094 ctgagatcctgcttggaagaagaacgaatccgtgaagcagacgaaccaacgtagccgaac 6035

                                       
Query: 315  gggtcctcacattccgacacgcttgcg 341
            || ||||||||||||||||||||||||
Sbjct: 6034 ggttcctcacattccgacacgcttgcg 6008
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>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/100 (87%), Gaps = 7/100 (7%)
 Strand = Plus / Minus

                                                                        
Query: 68   aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
            |||||||||||| ||||||||||||||||||||||  |||       ||| |||||||||
Sbjct: 4230 aagagcagggtccgactacggacgaaaacaaacgataaaat------gacatccatcctt 4177

                                                    
Query: 128  gctatcccaggctgccggcctggaacccatcctagatcga 167
            |||||||||||||||| ||||||||||||||||| |||||
Sbjct: 4176 gctatcccaggctgcc-gcctggaacccatcctatatcga 4138



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
            ||||||||||||||||||||||||||| |||||||||  | ||| ||||| |||| ||||
Sbjct: 2787 ctgagatcccgcttggaagaagaacgaatccgtgaagaagacgagccaacatagtcgaac 2728

                             
Query: 315  gggtcctcacattccga 331
            |  |||||||| |||||
Sbjct: 2727 gaatcctcacactccga 2711
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>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 257  gagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaacgg 316
            |||||||||||||||||||||||||  |||||||||   |||||||||||||| ||||| 
Sbjct: 2583 gagatcccgcttggaagaagaacgaaaccgtgaagtaaacgaaccaacgtagtcgaacga 2524

                           
Query: 317  gtcctcacattccga 331
             |||||||| |||||
Sbjct: 2523 atcctcacactccga 2509



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 44/46 (95%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 120  ccatccttgctatcccaggctgccggcctggaacccatcctagatc 165
            |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 3985 ccatccttgctatcccaggctgcc-gcctggaacccatcctggatc 3941



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 68   aagagcagggtctgactacggacgaaaacaaacga 102
            ||||||||||||| |||||||||||||||||||||
Sbjct: 4031 aagagcagggtctaactacggacgaaaacaaacga 3997
to top
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon,
           partial sequence
          Length = 3434

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 64/75 (85%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| ||||||||||||||||||||||       | || ||| |||||||||
Sbjct: 69  aagagcagggtccgactacggacgaaaacaaacga------taaaatgacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
to top
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial
           sequence
          Length = 3862

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 64/75 (85%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| |||||| |||||||||||||||       | |||||| |||||||||
Sbjct: 69  aagagcagggtccgactacagacgaaaacaaacga------taaaacgacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial
           sequence
          Length = 3622

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 64/75 (85%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| ||||||||||||||||||||||       | || ||| |||||||||
Sbjct: 69  aagagcagggtccgactacggacgaaaacaaacga------taaaatgacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial
           sequence
          Length = 3613

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 64/75 (85%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| ||||||||||||||||||||||       | || ||| |||||||||
Sbjct: 69  aagagcagggtccgactacggacgaaaacaaacga------taaaatgacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial
           sequence
          Length = 3698

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 63/75 (84%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| | ||||||||||||||||||||       | ||| || |||||||||
Sbjct: 69  aagagcagggtccggctacggacgaaaacaaacga------taaaacaacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial
           sequence
          Length = 3804

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 63/75 (84%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| | ||||||||||||||||||||       | ||| || |||||||||
Sbjct: 69  aagagcagggtccggctacggacgaaaacaaacga------taaaacaacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial
           sequence
          Length = 3943

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 63/75 (84%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| | ||||||||||||||||||||       | ||| || |||||||||
Sbjct: 69  aagagcagggtccggctacggacgaaaacaaacga------taaaacaacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial
           sequence
          Length = 3764

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 63/75 (84%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| ||||||||||||||||||| ||  |||       ||| |||||||||
Sbjct: 69  aagagcagggtccgactacggacgaaaacaaatgataaaat------gacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial
           sequence
          Length = 3774

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 63/75 (84%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           |||||||||||| ||||||||||||||||||| ||  |||       ||| |||||||||
Sbjct: 69  aagagcagggtccgactacggacgaaaacaaatgataaaat------gacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon,
           partial sequence
          Length = 4001

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 112 aacgacgtccatccttgctatcccaggctgc 142
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
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>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula
           retrotransposon, partial sequence
          Length = 3935

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 112 aacgacgtccatccttgctatcccaggctgc 142
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
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>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial
           sequence
          Length = 3997

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 112 aacgacgtccatccttgctatcccaggctgc 142
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
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>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial
           sequence
          Length = 4120

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 112 aacgacgtccatccttgctatcccaggctgc 142
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
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>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial
           sequence
          Length = 2924

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 112 aacgacgtccatccttgctatcccaggctgc 142
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
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>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial
           sequence
          Length = 2923

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 112 aacgacgtccatccttgctatcccaggctgc 142
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
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>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7919

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 80/95 (84%), Gaps = 7/95 (7%)
 Strand = Plus / Minus

                                                                        
Query: 67   taagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcct 126
            ||||||||||||| |||||||||||||| |||||     || || || ||| ||||||||
Sbjct: 4343 taagagcagggtccgactacggacgaaatcaaac-----aataa-aatgacatccatcct 4290

                                               
Query: 127  tgctatcccaggctgccggcctggaacccatccta 161
            |||||||| |||||||| |||| ||| ||||||||
Sbjct: 4289 tgctatcctaggctgcc-gcctagaatccatccta 4256



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 255  ctgagatcccgcttggaagaagaacgactccgtgaag 291
            ||||||||||||| ||||||||||||| ||| |||||
Sbjct: 2873 ctgagatcccgctcggaagaagaacgattccatgaag 2837
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>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula,
           complete sequence
          Length = 3695

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 62/75 (82%), Gaps = 6/75 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  aagagcagggtctgactacggacgaaaacaaacgaccaaagaagaacgacgtccatcctt 127
           ||||||||||||   ||||||||||||||||||||       | || ||| |||||||||
Sbjct: 69  aagagcagggtccatctacggacgaaaacaaacga------taaaatgacatccatcctt 16

                          
Query: 128 gctatcccaggctgc 142
           |||||||||||||||
Sbjct: 15  gctatcccaggctgc 1
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>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula,
          complete sequence
          Length = 3683

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                      
Query: 68 aagagcagggtctgactacggacgaaaa 95
          |||||||||||| |||||||||||||||
Sbjct: 69 aagagcagggtccgactacggacgaaaa 42



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 119 tccatccttgctatcccaggctgc 142
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
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>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                          
Query: 255    ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
              |||| |||||||  ||||||||||||| ||| |||||| | | |||  ||||||| ||||
Sbjct: 194904 ctgaaatcccgcaaggaagaagaacgagtccatgaagtagacaaacggacgtagtcgaac 194963

                         
Query: 315    gggtcctcaca 325
              || ||||||||
Sbjct: 194964 ggatcctcaca 194974
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>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence
          Length = 103866

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 255   ctgagatcccgcttggaagaagaacgactccgtgaagtcggcgaaccaacgtagttgaac 314
             |||| |||||||  ||||||||| ||| ||| |||||  | | ||| ||||||| |||||
Sbjct: 30154 ctgaaatcccgcaaggaagaagagcgagtccatgaagaagacaaacgaacgtagatgaac 30095

                        
Query: 315   gggtcctcaca 325
             |||||||||||
Sbjct: 30094 gggtcctcaca 30084
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>gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108K3 map 15q21, complete
             sequence
          Length = 144714

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 626   ctggagctccaggcctggaaggcgaggtggg 656
             |||||||||||||||||| ||||| ||||||
Sbjct: 30297 ctggagctccaggcctggcaggcgtggtggg 30267
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>gb|AY957953.1| Homo sapiens cytochrome P450, family 19, subfamily A, polypeptide 1
             (CYP19A1) gene, complete cds
          Length = 133132

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 626   ctggagctccaggcctggaaggcgaggtggg 656
             |||||||||||||||||| ||||| ||||||
Sbjct: 39979 ctggagctccaggcctggcaggcgtggtggg 40009
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>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence
          Length = 172618

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 123    tccttgctatcccaggctgcc 143
              |||||||||||||||||||||
Sbjct: 170021 tccttgctatcccaggctgcc 170001
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>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence
          Length = 168864

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   tccttgctatcccaggctgcc 143
             |||||||||||||||||||||
Sbjct: 20040 tccttgctatcccaggctgcc 20020
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 655     ggcgcacaaggcgctggctg 674
               ||||||||||||||||||||
Sbjct: 1440133 ggcgcacaaggcgctggctg 1440114
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>gb|AC124550.4| Mus musculus BAC clone RP23-211F21 from chromosome 1, complete sequence
          Length = 204588

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 627   tggagctccaggcctggaag 646
             ||||||||||||||||||||
Sbjct: 80367 tggagctccaggcctggaag 80386
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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 636    aggcctggaaggcgaggtgg 655
              ||||||||||||||||||||
Sbjct: 200046 aggcctggaaggcgaggtgg 200065
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>gb|AC129919.9| Homo sapiens chromosome 17, clone RP13-1277B16, complete sequence
          Length = 182735

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 623    agcctggagctccaggcctg 642
              ||||||||||||||||||||
Sbjct: 178169 agcctggagctccaggcctg 178188
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>gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, complete sequence
          Length = 176647

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    aagtaacctttacctgtacc 249
              ||||||||||||||||||||
Sbjct: 160098 aagtaacctttacctgtacc 160079
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      aacaaacgaccaaagaagaa 113
               ||||||||||||||||||||
Sbjct: 2305029 aacaaacgaccaaagaagaa 2305048
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>gb|AC012238.7| Homo sapiens, clone RP11-16F4, complete sequence
          Length = 156834

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   aagtaacctttacctgtacc 249
             ||||||||||||||||||||
Sbjct: 68652 aagtaacctttacctgtacc 68633
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>gb|AC027601.25| Homo sapiens chromosome 17, clone RP11-455O6, complete sequence
          Length = 192732

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 623   agcctggagctccaggcctg 642
             ||||||||||||||||||||
Sbjct: 27447 agcctggagctccaggcctg 27466
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>gb|AC004822.1|AC004822 Homo sapiens PAC clone RP1-170D19 from Xq23, complete sequence
          Length = 127824

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   cgcaccatcacatggggctg 504
             ||||||||||||||||||||
Sbjct: 78462 cgcaccatcacatggggctg 78443
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>gb|AF091121.1|AF091121 Tripedalia cystophora retinoic acid X receptor mRNA, complete cds
          Length = 2529

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 500  ggctgctgacaaacagcttg 519
            ||||||||||||||||||||
Sbjct: 1524 ggctgctgacaaacagcttg 1543
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>gb|AY168508.1| Macropus rufus oocyte maturation factor Mos (c-mos) gene, partial
           cds
          Length = 576

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 472 ggcggccacaacgcgcacca 491
           ||||||||||||||||||||
Sbjct: 198 ggcggccacaacgcgcacca 179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,602,375
Number of Sequences: 3902068
Number of extensions: 3602375
Number of successful extensions: 61403
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61139
Number of HSP's gapped (non-prelim): 218
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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