>TOP1_YEAST (P04786) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Maintenance of killer protein 1)
          Length = 769

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 537 WLFIWPEKYRLSLRYTTLRIHFNKFEKFDYEHFEQA--LRKWVSLYNEPHTRNIVSNTLR 364
           WL +W E    S +Y  L  + +   + DY+ FE+A  L+ ++      +TRN+ S  + 
Sbjct: 344 WLAMWRENIFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVML 403

Query: 363 QQ 358
           ++
Sbjct: 404 ER 405

>MTMRD_HUMAN (Q86WG5) Myotubularin-related protein 13 (SET-binding factor 2)|
          Length = 1849

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -3

Query: 420  WVSLYNEPHTRNIVSNTLRQQYVKCLKTLIGATRSAPFMNAPHMQDLLAETQQILKELGE 241
            W SL +   TR I S T    ++     L G   SA F N+ ++Q+ L + Q  L   GE
Sbjct: 1267 WASLRSS--TRLISSPT---SFIDVGARLAGKDHSASFSNSSYLQNQLLKRQAALYIFGE 1321

Query: 240  ENNMMTHRVDF 208
            ++ +   +V+F
Sbjct: 1322 KSQLRNFKVEF 1332

>TLR13_MOUSE (Q6R5N8) Toll-like receptor 13 precursor|
          Length = 991

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 689 KHLKLLDFLTVEEWQYKHGHQRTRYSC*GFLGNI*SMDTSKLMLCAYQTNAGYSYGQKNI 510
           KHL+ L  + +  W+ +HGH   +  C   LGN+      KL    +Q N   + G K +
Sbjct: 314 KHLQNLRAMDLSNWELRHGHLDMKTVC-HLLGNL-----PKLETLVFQKNVTNAEGIKQL 367

Query: 509 A 507
           A
Sbjct: 368 A 368

>SIA8A_PANTR (P61642) Alpha-N-acetylneuraminide alpha-2,8-sialyltransferase (EC|
           2.4.99.8) (Ganglioside GD3 synthase) (Ganglioside GT3
           synthase) (Alpha-2,8-sialyltransferase 8A) (ST8Sia I)
          Length = 356

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -3

Query: 660 CGRMAIQAWAPANSVLLLRLPREHMKHGYFKIDVVRIPDKCWLFIWPEKYRL 505
           CGR   Q    A +VL  + PR  +  G   + VV +   CWL+I+P  YRL
Sbjct: 4   CGRARRQTSRGAMAVLAWKFPRTRLPMGASALCVVVL---CWLYIFP-VYRL 51

>SIA8A_HUMAN (Q92185) Alpha-N-acetylneuraminide alpha-2,8-sialyltransferase (EC|
           2.4.99.8) (Ganglioside GD3 synthase) (Ganglioside GT3
           synthase) (Alpha-2,8-sialyltransferase 8A) (ST8Sia I)
          Length = 356

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -3

Query: 660 CGRMAIQAWAPANSVLLLRLPREHMKHGYFKIDVVRIPDKCWLFIWPEKYRL 505
           CGR   Q    A +VL  + PR  +  G   + VV +   CWL+I+P  YRL
Sbjct: 4   CGRARRQTSRGAMAVLAWKFPRTRLPMGASALCVVVL---CWLYIFP-VYRL 51

>MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle|
          Length = 1935

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 680 KLLDFLTVEEWQYKHGHQRTRYSC*GFLGNI*SMDTSKLMLCAYQTNA 537
           KLL  + V+  QYK GH +  +   G LG +  M   KL L    T A
Sbjct: 745 KLLGSIDVDHTQYKFGHTKVFFKA-GLLGALEEMRDEKLALLVTMTQA 791

>AKT6_ARATH (Q8GXE6) Potassium channel AKT6 (Shaker pollen inward rectifier|
           K(+) channel) (Potassium channel SPIK)
          Length = 888

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
 Frame = -3

Query: 639 AWAPANSVLLLRLPR------EHMKHGYFKIDVV-----RIPDKCWLFIWPEKYRLSLRY 493
           AWA       L+ PR      +++ +G+F +D+V        DK    +  +  R++ RY
Sbjct: 95  AWASPFEFGFLQKPRPPLSILDNIVNGFFAVDIVLTFFVAFLDKVTYLLVDDPKRIAWRY 154

Query: 492 TTLRIHFNKFEKFDYEHFEQALRKWVSLY 406
            +  + F+    F YE F   L + +  Y
Sbjct: 155 ASTWLIFDVVSTFPYEIFGSLLHESIQGY 183

>RAD50_METMA (Q8PUY4) DNA double-strand break repair rad50 ATPase|
          Length = 1070

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 366 RQQYVKCLKTLIGAT---RSAPFMNAPHMQDLLAETQQILKELGEENNMMTHRVDFGDAE 196
           R Q ++ LK  I  +   ++A F       + +   +++L ELGEEN+ M     FGD E
Sbjct: 254 RLQEIEVLKQAIRKSQEDKAACFKEKETFSEEVQVQRRVLLELGEENSGMREECGFGDLE 313

>PTPA2_CRYNE (Q5KCM5) Serine/threonine-protein phosphatase 2A activator 2 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2)
           (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl
           phosphatase activator 2)
          Length = 382

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 198 LHHQNPHGASSYCSLLPIPSIFAASQPAN 284
           +H  +  G S  C  +P+PS FAA+Q AN
Sbjct: 334 IHDPSEKGWSMDCCGIPVPSAFAAAQDAN 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,763,170
Number of Sequences: 219361
Number of extensions: 2007903
Number of successful extensions: 5174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5173
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)