ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdd21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete s... 46 0.15
2emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chr... 46 0.15
3gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, com... 46 0.15
4emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chr... 44 0.60
5gb|AE008572.1| Rickettsia conorii str. Malish 7, section 4 of 11... 42 2.4
6ref|XM_725703.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 2.4
7emb|AL354921.12| Human DNA sequence from clone RP5-840O13 on chr... 42 2.4
8emb|CR352295.8| Zebrafish DNA sequence from clone DKEY-30J11 in ... 42 2.4
9emb|BX649313.6| Zebrafish DNA sequence from clone DKEY-112A7 in ... 42 2.4
10emb|BX470146.8| Zebrafish DNA sequence from clone DKEY-126D11 in... 42 2.4
11gb|AC107015.6| Homo sapiens 3 BAC RP11-124D9 (Roswell Park Cance... 42 2.4
12gb|AC113195.8| Homo sapiens chromosome 18, clone RP11-1112K22, c... 42 2.4
13gb|AC087534.8| Homo sapiens chromosome 18, clone RP11-716B20, co... 42 2.4
14ref|XM_680334.1| PREDICTED: Danio rerio similar to nicotinic ace... 42 2.4
15ref|XM_680064.1| PREDICTED: Danio rerio similar to nicotinic ace... 42 2.4
16ref|XM_687828.1| PREDICTED: Danio rerio similar to nicotinic ace... 42 2.4
17gb|AC160946.6| Mus musculus 10 BAC RP23-175G6 (Roswell Park Canc... 42 2.4
18gb|AC153917.6| Mus musculus 10 BAC RP23-283D8 (Roswell Park Canc... 42 2.4
19gb|AC108697.3| Homo sapiens 3 BAC RP11-8N23 (Roswell Park Cancer... 42 2.4
20gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complet... 42 2.4
21emb|BX005310.6| Zebrafish DNA sequence from clone CH211-214J2 in... 42 2.4
22gb|AC115058.17| Mus musculus chromosome 5, clone RP24-381E3, com... 40 9.4
23ref|XM_462697.1| Oryza sativa (japonica cultivar-group), predic... 40 9.4
24gb|AC159422.1| Trypanosoma brucei chromosome 5 clone RPCI93-26C7... 40 9.4
25gb|AC159419.1| Trypanosoma brucei chromosome 5 clone RPCI93-25P1... 40 9.4
26gb|AC158348.4| Mus musculus chromosome 8, clone RP24-134G9, comp... 40 9.4
27gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 40 9.4
28gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome ... 40 9.4
29gb|AF068716.1| Caenorhabditis elegans cosmid F26D11, complete se... 40 9.4
30gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic seque... 40 9.4
31gb|AC124433.4| Mus musculus BAC clone RP24-248P14 from chromosom... 40 9.4
32gb|AC101714.10| Mus musculus chromosome 8, clone RP23-283I2, com... 40 9.4
33gb|AY812795.1| Schistosoma japonicum SJCHGC02295 protein mRNA, c... 40 9.4
34gb|AC118645.13| Mus musculus chromosome 15, clone RP24-114E9, co... 40 9.4
35gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.4
36gb|AC102350.14| Mus musculus chromosome 9, clone RP23-323P3, com... 40 9.4
37gb|AC124725.3| Mus musculus BAC clone RP23-459F16 from chromosom... 40 9.4
38emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 9.4
39gb|AC122340.3| Mus musculus BAC clone RP23-354B8 from 15, comple... 40 9.4
40ref|XM_720857.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 9.4
41gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, com... 40 9.4
42gb|AF038608.1| Caenorhabditis elegans cosmid C09G12, complete se... 40 9.4
43gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete se... 40 9.4
44gb|AC124955.34| Medicago truncatula clone mth2-12l24, complete s... 40 9.4
45gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete se... 40 9.4
46gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, compl... 40 9.4
47emb|AL390836.12| Human DNA sequence from clone RP13-179C6 on chr... 40 9.4
48emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 40 9.4
49emb|AL669892.11| Mouse DNA sequence from clone RP23-31K14 on chr... 40 9.4
50emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4,... 40 9.4
51emb|AL954336.3| Mouse DNA sequence from clone RP23-223H19 on chr... 40 9.4
52gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete s... 40 9.4
53gb|AC026394.11| Homo sapiens chromosome 10 clone RP11-427O20, co... 40 9.4
54gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complet... 40 9.4
55dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
56dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
57gb|AC007502.6| Homo sapiens chromosome 16 clone RP11-98C8, compl... 40 9.4
58gb|AC125766.5| Homo sapiens 3 BAC RP11-62F21 (Roswell Park Cance... 40 9.4
59dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 9.4
60emb|BX294107.4| Zebrafish DNA sequence from clone DKEYP-2D10 in ... 40 9.4
61gb|AC156288.5| Mus musculus 6 BAC RP24-246G10 (Roswell Park Canc... 40 9.4
62gb|AC152943.1| Mus musculus 10 BAC RP23-225G5 (Roswell Park Canc... 40 9.4
63gb|AC157326.2| Dasypus novemcinctus, clone Dasypus novemcinctus-... 40 9.4
64gb|AC007869.2|AC007869 Genomic Sequence for Homo sapiens Clone 4... 40 9.4
65gb|AF016657.1| Caenorhabditis elegans cosmid C16C4, complete seq... 40 9.4
66dbj|AK066988.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4
67dbj|AK065786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4
68emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5... 40 9.4
69gb|AC101221.11| Mus musculus chromosome 13, clone RP23-96E4, com... 40 9.4
70emb|BX294446.6| Mouse DNA sequence from clone RP23-459F16 on chr... 40 9.4
71emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g... 40 9.4
72emb|CR788294.5| Zebrafish DNA sequence from clone DKEY-68A6 in l... 40 9.4
73emb|AL928871.5| Mouse DNA sequence from clone RP23-350F2 on chro... 40 9.4
74emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chr... 40 9.4
75gb|AC161208.9| Mus musculus chromosome 5, clone RP23-71M14, comp... 40 9.4 
>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence
          Length = 116591

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 561   catcaattttgaagtatccatgcttca 587
             ||||||||||||||||||| |||||||
Sbjct: 14195 catcaattttgaagtatccgtgcttca 14221
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>emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chromosome 10 Contains a
             pseudogene similar to part of solute carrier family 25,
             (mitochondrial carrier), member 18 (SLC25A18), the GPR10
             gene for G protein-coupled receptor 10 (GR3, PrRPR), a
             translocase of outer mitochondrial membrane 22 homolog
             (yeast) (TOM22) (TOMM22) pseudogene and one CpG island,
             complete sequence
          Length = 156604

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 451   atcaaacttttcaaatttattaa 473
             |||||||||||||||||||||||
Sbjct: 44119 atcaaacttttcaaatttattaa 44097
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>gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, complete sequence
          Length = 196013

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 455    aacttttcaaatttattaaaatg 477
              |||||||||||||||||||||||
Sbjct: 129045 aacttttcaaatttattaaaatg 129023
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>emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chromosome X, complete
             sequence
          Length = 163726

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 452   tcaaacttttcaaatttattaa 473
             ||||||||||||||||||||||
Sbjct: 25827 tcaaacttttcaaatttattaa 25848
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>gb|AE008572.1| Rickettsia conorii str. Malish 7, section 4 of 114 of the complete
             genome
          Length = 12429

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 600   gaagccttagcaagagtaccg 620
             |||||||||||||||||||||
Sbjct: 10059 gaagccttagcaagagtaccg 10039
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>ref|XM_725703.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00284)
           partial mRNA
          Length = 1089

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 451 atcaaacttttcaaatttattaaaa 475
           ||||||||||||| |||||||||||
Sbjct: 51  atcaaacttttcacatttattaaaa 27
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>emb|AL354921.12| Human DNA sequence from clone RP5-840O13 on chromosome 11p12-13,
             complete sequence
          Length = 106657

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    actgcccctctccctacccct 53
             |||||||||||||||||||||
Sbjct: 29628 actgcccctctccctacccct 29648
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>emb|CR352295.8| Zebrafish DNA sequence from clone DKEY-30J11 in linkage group 7, complete
              sequence
          Length = 119970

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 551    atgcgcacaacatcaattttg 571
              |||||||||||||||||||||
Sbjct: 100391 atgcgcacaacatcaattttg 100411
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>emb|BX649313.6| Zebrafish DNA sequence from clone DKEY-112A7 in linkage group 7,
             complete sequence
          Length = 104374

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 551   atgcgcacaacatcaattttg 571
             |||||||||||||||||||||
Sbjct: 50400 atgcgcacaacatcaattttg 50380
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>emb|BX470146.8| Zebrafish DNA sequence from clone DKEY-126D11 in linkage group 7,
             complete sequence
          Length = 168554

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 551   atgcgcacaacatcaattttg 571
             |||||||||||||||||||||
Sbjct: 80024 atgcgcacaacatcaattttg 80044
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>gb|AC107015.6| Homo sapiens 3 BAC RP11-124D9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156277

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 447   cataatcaaacttttcaaatttatt 471
             ||||||||| |||||||||||||||
Sbjct: 77027 cataatcaaccttttcaaatttatt 77003
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>gb|AC113195.8| Homo sapiens chromosome 18, clone RP11-1112K22, complete sequence
          Length = 162760

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 445    ttcataatcaaacttttcaaattta 469
              |||||||| ||||||||||||||||
Sbjct: 148176 ttcataatgaaacttttcaaattta 148152
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>gb|AC087534.8| Homo sapiens chromosome 18, clone RP11-716B20, complete sequence
          Length = 176966

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 445    ttcataatcaaacttttcaaattta 469
              |||||||| ||||||||||||||||
Sbjct: 135020 ttcataatgaaacttttcaaattta 135044
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>ref|XM_680334.1| PREDICTED: Danio rerio similar to nicotinic acetylcholine receptor
           beta 1a subunit (LOC557298), mRNA
          Length = 1464

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 551 atgcgcacaacatcaattttg 571
           |||||||||||||||||||||
Sbjct: 290 atgcgcacaacatcaattttg 270
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>ref|XM_680064.1| PREDICTED: Danio rerio similar to nicotinic acetylcholine receptor
           beta 1a subunit (LOC557084), mRNA
          Length = 1461

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 551 atgcgcacaacatcaattttg 571
           |||||||||||||||||||||
Sbjct: 287 atgcgcacaacatcaattttg 267
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>ref|XM_687828.1| PREDICTED: Danio rerio similar to nicotinic acetylcholine receptor
           beta 1a subunit (LOC564495), partial mRNA
          Length = 1178

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 551 atgcgcacaacatcaattttg 571
           |||||||||||||||||||||
Sbjct: 287 atgcgcacaacatcaattttg 267
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>gb|AC160946.6| Mus musculus 10 BAC RP23-175G6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 192628

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    cctctccctacccctcttcct 59
             |||||||||||||||||||||
Sbjct: 62074 cctctccctacccctcttcct 62054
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>gb|AC153917.6| Mus musculus 10 BAC RP23-283D8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 182207

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    cctctccctacccctcttcct 59
             |||||||||||||||||||||
Sbjct: 31937 cctctccctacccctcttcct 31957
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>gb|AC108697.3| Homo sapiens 3 BAC RP11-8N23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163737

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 447    cataatcaaacttttcaaatttatt 471
              ||||||||| |||||||||||||||
Sbjct: 161520 cataatcaaccttttcaaatttatt 161496
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>gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complete sequence
          Length = 161935

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 115    aatgaaagagacgattcattcactt 139
              |||| ||||||||||||||||||||
Sbjct: 102131 aatggaagagacgattcattcactt 102155
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>emb|BX005310.6| Zebrafish DNA sequence from clone CH211-214J2 in linkage group 7,
              complete sequence
          Length = 221979

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 551    atgcgcacaacatcaattttg 571
              |||||||||||||||||||||
Sbjct: 199424 atgcgcacaacatcaattttg 199404
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>gb|AC115058.17| Mus musculus chromosome 5, clone RP24-381E3, complete sequence
          Length = 187046

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     tcttcctaagagatgcctct 72
              ||||||||||||||||||||
Sbjct: 106791 tcttcctaagagatgcctct 106810
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>ref|XM_462697.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2328

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 662  tcaagaagtccaacaatttcaagtgctt 689
            |||||||||||| ||| |||||||||||
Sbjct: 2063 tcaagaagtccagcaacttcaagtgctt 2036
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>gb|AC159422.1| Trypanosoma brucei chromosome 5 clone RPCI93-26C7, complete sequence
          Length = 144928

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    aaaatgttcataatcaaact 458
              ||||||||||||||||||||
Sbjct: 100623 aaaatgttcataatcaaact 100642
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>gb|AC159419.1| Trypanosoma brucei chromosome 5 clone RPCI93-25P15, complete sequence
          Length = 130539

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  aaaatgttcataatcaaact 458
            ||||||||||||||||||||
Sbjct: 2501 aaaatgttcataatcaaact 2520
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>gb|AC158348.4| Mus musculus chromosome 8, clone RP24-134G9, complete sequence
          Length = 175836

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 227    atcatattgttctcttctcccaattcct 254
              |||||||| ||| |||||||||||||||
Sbjct: 118479 atcatattcttcccttctcccaattcct 118506
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 439     aaaatgttcataatcaaact 458
               ||||||||||||||||||||
Sbjct: 1414223 aaaatgttcataatcaaact 1414242
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>gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome 14, complete sequence
          Length = 209896

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     ctctccctacccctcttcct 59
              ||||||||||||||||||||
Sbjct: 180828 ctctccctacccctcttcct 180847
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>gb|AF068716.1| Caenorhabditis elegans cosmid F26D11, complete sequence
          Length = 36161

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    ctgcccctctccctacccct 53
             ||||||||||||||||||||
Sbjct: 18773 ctgcccctctccctacccct 18792
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>gb|AC147427.2| Oryza sativa chromosome 3  B1394A07 genomic sequence, complete sequence
          Length = 175704

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    tctcttctcccaattccttc 256
              ||||||||||||||||||||
Sbjct: 134524 tctcttctcccaattccttc 134543
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>gb|AC124433.4| Mus musculus BAC clone RP24-248P14 from chromosome 13, complete
             sequence
          Length = 169876

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 232   attgttctcttctcccaattccttcaat 259
             |||||||||||| ||||||| |||||||
Sbjct: 24400 attgttctcttcacccaatttcttcaat 24427
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>gb|AC101714.10| Mus musculus chromosome 8, clone RP23-283I2, complete sequence
          Length = 157233

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 227  atcatattgttctcttctcccaattcct 254
            |||||||| ||| |||||||||||||||
Sbjct: 1152 atcatattcttcccttctcccaattcct 1179
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>gb|AY812795.1| Schistosoma japonicum SJCHGC02295 protein mRNA, complete cds
          Length = 1367

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 attcattcactttaacaata 147
           ||||||||||||||||||||
Sbjct: 970 attcattcactttaacaata 951
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>gb|AC118645.13| Mus musculus chromosome 15, clone RP24-114E9, complete sequence
          Length = 172076

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   ttttcaaatttattaaaatg 477
             ||||||||||||||||||||
Sbjct: 37314 ttttcaaatttattaaaatg 37333
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 237      tctcttctcccaattccttc 256
                ||||||||||||||||||||
Sbjct: 24501336 tctcttctcccaattccttc 24501317
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>gb|AC102350.14| Mus musculus chromosome 9, clone RP23-323P3, complete sequence
          Length = 211216

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    ttctcttctcccaattcctt 255
              ||||||||||||||||||||
Sbjct: 206015 ttctcttctcccaattcctt 205996
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>gb|AC124725.3| Mus musculus BAC clone RP23-459F16 from chromosome 2, complete sequence
          Length = 168983

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ctctccctacccctcttcct 59
             ||||||||||||||||||||
Sbjct: 76269 ctctccctacccctcttcct 76250
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>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15,
              complete sequence
          Length = 185021

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 662    tcaagaagtccaacaatttcaagtgctt 689
              |||||||||||| ||| |||||||||||
Sbjct: 171823 tcaagaagtccagcaacttcaagtgctt 171796
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>gb|AC122340.3| Mus musculus BAC clone RP23-354B8 from 15, complete sequence
          Length = 183991

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   ttttcaaatttattaaaatg 477
             ||||||||||||||||||||
Sbjct: 48882 ttttcaaatttattaaaatg 48863
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>ref|XM_720857.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05485)
           partial mRNA
          Length = 887

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 458 ttttcaaatttattaaaatg 477
           ||||||||||||||||||||
Sbjct: 67  ttttcaaatttattaaaatg 48
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>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence
          Length = 222845

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    ttctcttctcccaattcctt 255
              ||||||||||||||||||||
Sbjct: 115131 ttctcttctcccaattcctt 115150
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>gb|AF038608.1| Caenorhabditis elegans cosmid C09G12, complete sequence
          Length = 41519

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   tcataatcaaacttttcaaa 465
             ||||||||||||||||||||
Sbjct: 23692 tcataatcaaacttttcaaa 23711
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>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence
          Length = 139330

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   cttgcgcaaagcttgttcaa 440
             ||||||||||||||||||||
Sbjct: 15787 cttgcgcaaagcttgttcaa 15768
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>gb|AC124955.34| Medicago truncatula clone mth2-12l24, complete sequence
          Length = 115804

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   atcaaacttttcaaatttat 470
             ||||||||||||||||||||
Sbjct: 99504 atcaaacttttcaaatttat 99485
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>gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete sequence
          Length = 147062

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   atcaaacttttcaaatttat 470
             ||||||||||||||||||||
Sbjct: 47559 atcaaacttttcaaatttat 47578
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>gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, complete sequence
          Length = 165651

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    gagggtctttaagcatttca 353
              ||||||||||||||||||||
Sbjct: 141688 gagggtctttaagcatttca 141669
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>emb|AL390836.12| Human DNA sequence from clone RP13-179C6 on chromosome X, complete
            sequence
          Length = 169482

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 454  aaacttttcaaatttattaaaatg 477
            |||||| |||||||||||||||||
Sbjct: 2106 aaacttctcaaatttattaaaatg 2129
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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    accttctgatatcctagttg 189
              ||||||||||||||||||||
Sbjct: 743955 accttctgatatcctagttg 743974
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>emb|AL669892.11| Mouse DNA sequence from clone RP23-31K14 on chromosome 11 Contains a
             hepatitis A virus cellular receptor (Havcr) pseudogene,
             the Timd2 gene for T-cell immunoglobulin and mucin domain
             containing 2, a ribosomal protein L7 (Rpl7) pseudogene,
             the Havcr1 gene for hepatitis A virus cellular receptor 1
             and a CpG island, complete sequence
          Length = 158979

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   ttcactttaacaatatccta 152
             ||||||||||||||||||||
Sbjct: 33916 ttcactttaacaatatccta 33935
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>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16,
             complete sequence
          Length = 157801

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 662   tcaagaagtccaacaatttcaagtgctt 689
             |||||||||||| ||| |||||||||||
Sbjct: 17658 tcaagaagtccagcaacttcaagtgctt 17631
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>emb|AL954336.3| Mouse DNA sequence from clone RP23-223H19 on chromosome 11 Contains a
              high mobility group box 1 (Hmgb1) pseudogene, a novel gene
              and two CpG islands, complete sequence
          Length = 117391

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 458    ttttcaaatttattaaaatg 477
              ||||||||||||||||||||
Sbjct: 100606 ttttcaaatttattaaaatg 100625
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>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence
          Length = 120889

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   ttttcaaatttattaaaatg 477
             ||||||||||||||||||||
Sbjct: 67467 ttttcaaatttattaaaatg 67486
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>gb|AC026394.11| Homo sapiens chromosome 10 clone RP11-427O20, complete sequence
          Length = 174186

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    gctgcgtctcagccagcaaa 283
              ||||||||||||||||||||
Sbjct: 145565 gctgcgtctcagccagcaaa 145584
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>gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complete sequence
          Length = 165004

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   acttttcaaatttattaaaa 475
             ||||||||||||||||||||
Sbjct: 88789 acttttcaaatttattaaaa 88808
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 662      tcaagaagtccaacaatttcaagtgctt 689
                |||||||||||| ||| |||||||||||
Sbjct: 11849063 tcaagaagtccagcaacttcaagtgctt 11849036
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 237      tctcttctcccaattccttc 256
                ||||||||||||||||||||
Sbjct: 24418805 tctcttctcccaattccttc 24418786
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>gb|AC007502.6| Homo sapiens chromosome 16 clone RP11-98C8, complete sequence
          Length = 158696

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   gagggtctttaagcatttca 353
             ||||||||||||||||||||
Sbjct: 13163 gagggtctttaagcatttca 13144
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>gb|AC125766.5| Homo sapiens 3 BAC RP11-62F21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 119300

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   taatcaaacttttcaaattt 468
             ||||||||||||||||||||
Sbjct: 42067 taatcaaacttttcaaattt 42086
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 18      taatctccccttgtaactgcccct 41
               |||||||||| |||||||||||||
Sbjct: 2606292 taatctccccatgtaactgcccct 2606315
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>emb|BX294107.4| Zebrafish DNA sequence from clone DKEYP-2D10 in linkage group 16,
             complete sequence
          Length = 65141

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 450   aatcaaacttttcaaatttattaaaatg 477
             |||||||||||||||| | |||||||||
Sbjct: 58823 aatcaaacttttcaaactaattaaaatg 58796
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>gb|AC156288.5| Mus musculus 6 BAC RP24-246G10 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 166923

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   ttttcaaatttattaaaatg 477
             ||||||||||||||||||||
Sbjct: 48996 ttttcaaatttattaaaatg 48977
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>gb|AC152943.1| Mus musculus 10 BAC RP23-225G5 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 198492

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 458 ttttcaaatttattaaaatg 477
           ||||||||||||||||||||
Sbjct: 849 ttttcaaatttattaaaatg 868
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>gb|AC157326.2| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875B19, complete
             sequence
          Length = 43078

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   tcaaacttttcaaatttatt 471
             ||||||||||||||||||||
Sbjct: 33978 tcaaacttttcaaatttatt 33959
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>gb|AC007869.2|AC007869 Genomic Sequence for Homo sapiens Clone 431C18 From Chromosome 8 (locus
             D8S1741), complete sequence
          Length = 196905

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    cccctctccctacccctctt 56
             ||||||||||||||||||||
Sbjct: 61608 cccctctccctacccctctt 61589
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>gb|AF016657.1| Caenorhabditis elegans cosmid C16C4, complete sequence
          Length = 38708

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   tcataatcaaacttttcaaa 465
             ||||||||||||||||||||
Sbjct: 21415 tcataatcaaacttttcaaa 21396
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>dbj|AK066988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093O18, full
            insert sequence
          Length = 3644

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 662  tcaagaagtccaacaatttcaagtgctt 689
            |||||||||||| ||| |||||||||||
Sbjct: 2925 tcaagaagtccagcaacttcaagtgctt 2898
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>dbj|AK065786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039J24, full
            insert sequence
          Length = 3814

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 662  tcaagaagtccaacaatttcaagtgctt 689
            |||||||||||| ||| |||||||||||
Sbjct: 3100 tcaagaagtccagcaacttcaagtgctt 3073
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>emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE
          Length = 210708

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 566   attttgaagtatccatgcttcata 589
             |||||||||||||| |||||||||
Sbjct: 11392 attttgaagtatccgtgcttcata 11369
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>gb|AC101221.11| Mus musculus chromosome 13, clone RP23-96E4, complete sequence
          Length = 258193

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 232    attgttctcttctcccaattccttcaat 259
              |||||||||||| ||||||| |||||||
Sbjct: 102899 attgttctcttcacccaatttcttcaat 102872
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>emb|BX294446.6| Mouse DNA sequence from clone RP23-459F16 on chromosome 2, complete
             sequence
          Length = 73907

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ctctccctacccctcttcct 59
             ||||||||||||||||||||
Sbjct: 21968 ctctccctacccctcttcct 21987
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>emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g11, COMPLETE SEQUENCE
          Length = 126690

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 566  attttgaagtatccatgcttcata 589
            |||||||||||||| |||||||||
Sbjct: 7579 attttgaagtatccgtgcttcata 7602
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>emb|CR788294.5| Zebrafish DNA sequence from clone DKEY-68A6 in linkage group 16,
             complete sequence
          Length = 69768

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 450   aatcaaacttttcaaatttattaaaatg 477
             |||||||||||||||| | |||||||||
Sbjct: 59884 aatcaaacttttcaaactaattaaaatg 59911
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>emb|AL928871.5| Mouse DNA sequence from clone RP23-350F2 on chromosome 2, complete
              sequence
          Length = 133330

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 455    aacttttcaaatttattaaa 474
              ||||||||||||||||||||
Sbjct: 107969 aacttttcaaatttattaaa 107950
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>emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chromosome 4, complete
             sequence
          Length = 128976

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    cttgcatatatacctacaat 109
             ||||||||||||||||||||
Sbjct: 48078 cttgcatatatacctacaat 48097
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>gb|AC161208.9| Mus musculus chromosome 5, clone RP23-71M14, complete sequence
          Length = 211079

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    tcttcctaagagatgcctct 72
             ||||||||||||||||||||
Sbjct: 66929 tcttcctaagagatgcctct 66948


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,472,340
Number of Sequences: 3902068
Number of extensions: 6472340
Number of successful extensions: 129551
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129226
Number of HSP's gapped (non-prelim): 325
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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