Clone Name | rbasdd21 |
---|---|
Clone Library Name | barley_pub |
>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence Length = 116591 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 561 catcaattttgaagtatccatgcttca 587 ||||||||||||||||||| ||||||| Sbjct: 14195 catcaattttgaagtatccgtgcttca 14221
>emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chromosome 10 Contains a pseudogene similar to part of solute carrier family 25, (mitochondrial carrier), member 18 (SLC25A18), the GPR10 gene for G protein-coupled receptor 10 (GR3, PrRPR), a translocase of outer mitochondrial membrane 22 homolog (yeast) (TOM22) (TOMM22) pseudogene and one CpG island, complete sequence Length = 156604 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 451 atcaaacttttcaaatttattaa 473 ||||||||||||||||||||||| Sbjct: 44119 atcaaacttttcaaatttattaa 44097
>gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, complete sequence Length = 196013 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 455 aacttttcaaatttattaaaatg 477 ||||||||||||||||||||||| Sbjct: 129045 aacttttcaaatttattaaaatg 129023
>emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chromosome X, complete sequence Length = 163726 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 tcaaacttttcaaatttattaa 473 |||||||||||||||||||||| Sbjct: 25827 tcaaacttttcaaatttattaa 25848
>gb|AE008572.1| Rickettsia conorii str. Malish 7, section 4 of 114 of the complete genome Length = 12429 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 600 gaagccttagcaagagtaccg 620 ||||||||||||||||||||| Sbjct: 10059 gaagccttagcaagagtaccg 10039
>ref|XM_725703.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00284) partial mRNA Length = 1089 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 atcaaacttttcaaatttattaaaa 475 ||||||||||||| ||||||||||| Sbjct: 51 atcaaacttttcacatttattaaaa 27
>emb|AL354921.12| Human DNA sequence from clone RP5-840O13 on chromosome 11p12-13, complete sequence Length = 106657 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 actgcccctctccctacccct 53 ||||||||||||||||||||| Sbjct: 29628 actgcccctctccctacccct 29648
>emb|CR352295.8| Zebrafish DNA sequence from clone DKEY-30J11 in linkage group 7, complete sequence Length = 119970 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 551 atgcgcacaacatcaattttg 571 ||||||||||||||||||||| Sbjct: 100391 atgcgcacaacatcaattttg 100411
>emb|BX649313.6| Zebrafish DNA sequence from clone DKEY-112A7 in linkage group 7, complete sequence Length = 104374 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 551 atgcgcacaacatcaattttg 571 ||||||||||||||||||||| Sbjct: 50400 atgcgcacaacatcaattttg 50380
>emb|BX470146.8| Zebrafish DNA sequence from clone DKEY-126D11 in linkage group 7, complete sequence Length = 168554 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 551 atgcgcacaacatcaattttg 571 ||||||||||||||||||||| Sbjct: 80024 atgcgcacaacatcaattttg 80044
>gb|AC107015.6| Homo sapiens 3 BAC RP11-124D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156277 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 447 cataatcaaacttttcaaatttatt 471 ||||||||| ||||||||||||||| Sbjct: 77027 cataatcaaccttttcaaatttatt 77003
>gb|AC113195.8| Homo sapiens chromosome 18, clone RP11-1112K22, complete sequence Length = 162760 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 445 ttcataatcaaacttttcaaattta 469 |||||||| |||||||||||||||| Sbjct: 148176 ttcataatgaaacttttcaaattta 148152
>gb|AC087534.8| Homo sapiens chromosome 18, clone RP11-716B20, complete sequence Length = 176966 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 445 ttcataatcaaacttttcaaattta 469 |||||||| |||||||||||||||| Sbjct: 135020 ttcataatgaaacttttcaaattta 135044
>ref|XM_680334.1| PREDICTED: Danio rerio similar to nicotinic acetylcholine receptor beta 1a subunit (LOC557298), mRNA Length = 1464 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 551 atgcgcacaacatcaattttg 571 ||||||||||||||||||||| Sbjct: 290 atgcgcacaacatcaattttg 270
>ref|XM_680064.1| PREDICTED: Danio rerio similar to nicotinic acetylcholine receptor beta 1a subunit (LOC557084), mRNA Length = 1461 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 551 atgcgcacaacatcaattttg 571 ||||||||||||||||||||| Sbjct: 287 atgcgcacaacatcaattttg 267
>ref|XM_687828.1| PREDICTED: Danio rerio similar to nicotinic acetylcholine receptor beta 1a subunit (LOC564495), partial mRNA Length = 1178 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 551 atgcgcacaacatcaattttg 571 ||||||||||||||||||||| Sbjct: 287 atgcgcacaacatcaattttg 267
>gb|AC160946.6| Mus musculus 10 BAC RP23-175G6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 192628 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 cctctccctacccctcttcct 59 ||||||||||||||||||||| Sbjct: 62074 cctctccctacccctcttcct 62054
>gb|AC153917.6| Mus musculus 10 BAC RP23-283D8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182207 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 cctctccctacccctcttcct 59 ||||||||||||||||||||| Sbjct: 31937 cctctccctacccctcttcct 31957
>gb|AC108697.3| Homo sapiens 3 BAC RP11-8N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163737 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 447 cataatcaaacttttcaaatttatt 471 ||||||||| ||||||||||||||| Sbjct: 161520 cataatcaaccttttcaaatttatt 161496
>gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complete sequence Length = 161935 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 aatgaaagagacgattcattcactt 139 |||| |||||||||||||||||||| Sbjct: 102131 aatggaagagacgattcattcactt 102155
>emb|BX005310.6| Zebrafish DNA sequence from clone CH211-214J2 in linkage group 7, complete sequence Length = 221979 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 551 atgcgcacaacatcaattttg 571 ||||||||||||||||||||| Sbjct: 199424 atgcgcacaacatcaattttg 199404
>gb|AC115058.17| Mus musculus chromosome 5, clone RP24-381E3, complete sequence Length = 187046 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tcttcctaagagatgcctct 72 |||||||||||||||||||| Sbjct: 106791 tcttcctaagagatgcctct 106810
>ref|XM_462697.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2328 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 662 tcaagaagtccaacaatttcaagtgctt 689 |||||||||||| ||| ||||||||||| Sbjct: 2063 tcaagaagtccagcaacttcaagtgctt 2036
>gb|AC159422.1| Trypanosoma brucei chromosome 5 clone RPCI93-26C7, complete sequence Length = 144928 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 aaaatgttcataatcaaact 458 |||||||||||||||||||| Sbjct: 100623 aaaatgttcataatcaaact 100642
>gb|AC159419.1| Trypanosoma brucei chromosome 5 clone RPCI93-25P15, complete sequence Length = 130539 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 aaaatgttcataatcaaact 458 |||||||||||||||||||| Sbjct: 2501 aaaatgttcataatcaaact 2520
>gb|AC158348.4| Mus musculus chromosome 8, clone RP24-134G9, complete sequence Length = 175836 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 227 atcatattgttctcttctcccaattcct 254 |||||||| ||| ||||||||||||||| Sbjct: 118479 atcatattcttcccttctcccaattcct 118506
>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence Length = 1608198 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 aaaatgttcataatcaaact 458 |||||||||||||||||||| Sbjct: 1414223 aaaatgttcataatcaaact 1414242
>gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome 14, complete sequence Length = 209896 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ctctccctacccctcttcct 59 |||||||||||||||||||| Sbjct: 180828 ctctccctacccctcttcct 180847
>gb|AF068716.1| Caenorhabditis elegans cosmid F26D11, complete sequence Length = 36161 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ctgcccctctccctacccct 53 |||||||||||||||||||| Sbjct: 18773 ctgcccctctccctacccct 18792
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence Length = 175704 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tctcttctcccaattccttc 256 |||||||||||||||||||| Sbjct: 134524 tctcttctcccaattccttc 134543
>gb|AC124433.4| Mus musculus BAC clone RP24-248P14 from chromosome 13, complete sequence Length = 169876 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 232 attgttctcttctcccaattccttcaat 259 |||||||||||| ||||||| ||||||| Sbjct: 24400 attgttctcttcacccaatttcttcaat 24427
>gb|AC101714.10| Mus musculus chromosome 8, clone RP23-283I2, complete sequence Length = 157233 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 227 atcatattgttctcttctcccaattcct 254 |||||||| ||| ||||||||||||||| Sbjct: 1152 atcatattcttcccttctcccaattcct 1179
>gb|AY812795.1| Schistosoma japonicum SJCHGC02295 protein mRNA, complete cds Length = 1367 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 attcattcactttaacaata 147 |||||||||||||||||||| Sbjct: 970 attcattcactttaacaata 951
>gb|AC118645.13| Mus musculus chromosome 15, clone RP24-114E9, complete sequence Length = 172076 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 ttttcaaatttattaaaatg 477 |||||||||||||||||||| Sbjct: 37314 ttttcaaatttattaaaatg 37333
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tctcttctcccaattccttc 256 |||||||||||||||||||| Sbjct: 24501336 tctcttctcccaattccttc 24501317
>gb|AC102350.14| Mus musculus chromosome 9, clone RP23-323P3, complete sequence Length = 211216 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ttctcttctcccaattcctt 255 |||||||||||||||||||| Sbjct: 206015 ttctcttctcccaattcctt 205996
>gb|AC124725.3| Mus musculus BAC clone RP23-459F16 from chromosome 2, complete sequence Length = 168983 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ctctccctacccctcttcct 59 |||||||||||||||||||| Sbjct: 76269 ctctccctacccctcttcct 76250
>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15, complete sequence Length = 185021 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 662 tcaagaagtccaacaatttcaagtgctt 689 |||||||||||| ||| ||||||||||| Sbjct: 171823 tcaagaagtccagcaacttcaagtgctt 171796
>gb|AC122340.3| Mus musculus BAC clone RP23-354B8 from 15, complete sequence Length = 183991 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 ttttcaaatttattaaaatg 477 |||||||||||||||||||| Sbjct: 48882 ttttcaaatttattaaaatg 48863
>ref|XM_720857.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05485) partial mRNA Length = 887 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 ttttcaaatttattaaaatg 477 |||||||||||||||||||| Sbjct: 67 ttttcaaatttattaaaatg 48
>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence Length = 222845 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 ttctcttctcccaattcctt 255 |||||||||||||||||||| Sbjct: 115131 ttctcttctcccaattcctt 115150
>gb|AF038608.1| Caenorhabditis elegans cosmid C09G12, complete sequence Length = 41519 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 tcataatcaaacttttcaaa 465 |||||||||||||||||||| Sbjct: 23692 tcataatcaaacttttcaaa 23711
>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence Length = 139330 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cttgcgcaaagcttgttcaa 440 |||||||||||||||||||| Sbjct: 15787 cttgcgcaaagcttgttcaa 15768
>gb|AC124955.34| Medicago truncatula clone mth2-12l24, complete sequence Length = 115804 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 atcaaacttttcaaatttat 470 |||||||||||||||||||| Sbjct: 99504 atcaaacttttcaaatttat 99485
>gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete sequence Length = 147062 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 atcaaacttttcaaatttat 470 |||||||||||||||||||| Sbjct: 47559 atcaaacttttcaaatttat 47578
>gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, complete sequence Length = 165651 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gagggtctttaagcatttca 353 |||||||||||||||||||| Sbjct: 141688 gagggtctttaagcatttca 141669
>emb|AL390836.12| Human DNA sequence from clone RP13-179C6 on chromosome X, complete sequence Length = 169482 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 aaacttttcaaatttattaaaatg 477 |||||| ||||||||||||||||| Sbjct: 2106 aaacttctcaaatttattaaaatg 2129
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 accttctgatatcctagttg 189 |||||||||||||||||||| Sbjct: 743955 accttctgatatcctagttg 743974
>emb|AL669892.11| Mouse DNA sequence from clone RP23-31K14 on chromosome 11 Contains a hepatitis A virus cellular receptor (Havcr) pseudogene, the Timd2 gene for T-cell immunoglobulin and mucin domain containing 2, a ribosomal protein L7 (Rpl7) pseudogene, the Havcr1 gene for hepatitis A virus cellular receptor 1 and a CpG island, complete sequence Length = 158979 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ttcactttaacaatatccta 152 |||||||||||||||||||| Sbjct: 33916 ttcactttaacaatatccta 33935
>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16, complete sequence Length = 157801 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 662 tcaagaagtccaacaatttcaagtgctt 689 |||||||||||| ||| ||||||||||| Sbjct: 17658 tcaagaagtccagcaacttcaagtgctt 17631
>emb|AL954336.3| Mouse DNA sequence from clone RP23-223H19 on chromosome 11 Contains a high mobility group box 1 (Hmgb1) pseudogene, a novel gene and two CpG islands, complete sequence Length = 117391 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 ttttcaaatttattaaaatg 477 |||||||||||||||||||| Sbjct: 100606 ttttcaaatttattaaaatg 100625
>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence Length = 120889 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 ttttcaaatttattaaaatg 477 |||||||||||||||||||| Sbjct: 67467 ttttcaaatttattaaaatg 67486
>gb|AC026394.11| Homo sapiens chromosome 10 clone RP11-427O20, complete sequence Length = 174186 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gctgcgtctcagccagcaaa 283 |||||||||||||||||||| Sbjct: 145565 gctgcgtctcagccagcaaa 145584
>gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complete sequence Length = 165004 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 acttttcaaatttattaaaa 475 |||||||||||||||||||| Sbjct: 88789 acttttcaaatttattaaaa 88808
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 662 tcaagaagtccaacaatttcaagtgctt 689 |||||||||||| ||| ||||||||||| Sbjct: 11849063 tcaagaagtccagcaacttcaagtgctt 11849036
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tctcttctcccaattccttc 256 |||||||||||||||||||| Sbjct: 24418805 tctcttctcccaattccttc 24418786
>gb|AC007502.6| Homo sapiens chromosome 16 clone RP11-98C8, complete sequence Length = 158696 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gagggtctttaagcatttca 353 |||||||||||||||||||| Sbjct: 13163 gagggtctttaagcatttca 13144
>gb|AC125766.5| Homo sapiens 3 BAC RP11-62F21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119300 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 taatcaaacttttcaaattt 468 |||||||||||||||||||| Sbjct: 42067 taatcaaacttttcaaattt 42086
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 taatctccccttgtaactgcccct 41 |||||||||| ||||||||||||| Sbjct: 2606292 taatctccccatgtaactgcccct 2606315
>emb|BX294107.4| Zebrafish DNA sequence from clone DKEYP-2D10 in linkage group 16, complete sequence Length = 65141 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 450 aatcaaacttttcaaatttattaaaatg 477 |||||||||||||||| | ||||||||| Sbjct: 58823 aatcaaacttttcaaactaattaaaatg 58796
>gb|AC156288.5| Mus musculus 6 BAC RP24-246G10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 166923 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 ttttcaaatttattaaaatg 477 |||||||||||||||||||| Sbjct: 48996 ttttcaaatttattaaaatg 48977
>gb|AC152943.1| Mus musculus 10 BAC RP23-225G5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198492 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 ttttcaaatttattaaaatg 477 |||||||||||||||||||| Sbjct: 849 ttttcaaatttattaaaatg 868
>gb|AC157326.2| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875B19, complete sequence Length = 43078 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 tcaaacttttcaaatttatt 471 |||||||||||||||||||| Sbjct: 33978 tcaaacttttcaaatttatt 33959
>gb|AC007869.2|AC007869 Genomic Sequence for Homo sapiens Clone 431C18 From Chromosome 8 (locus D8S1741), complete sequence Length = 196905 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cccctctccctacccctctt 56 |||||||||||||||||||| Sbjct: 61608 cccctctccctacccctctt 61589
>gb|AF016657.1| Caenorhabditis elegans cosmid C16C4, complete sequence Length = 38708 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 tcataatcaaacttttcaaa 465 |||||||||||||||||||| Sbjct: 21415 tcataatcaaacttttcaaa 21396
>dbj|AK066988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093O18, full insert sequence Length = 3644 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 662 tcaagaagtccaacaatttcaagtgctt 689 |||||||||||| ||| ||||||||||| Sbjct: 2925 tcaagaagtccagcaacttcaagtgctt 2898
>dbj|AK065786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039J24, full insert sequence Length = 3814 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 662 tcaagaagtccaacaatttcaagtgctt 689 |||||||||||| ||| ||||||||||| Sbjct: 3100 tcaagaagtccagcaacttcaagtgctt 3073
>emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE Length = 210708 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 566 attttgaagtatccatgcttcata 589 |||||||||||||| ||||||||| Sbjct: 11392 attttgaagtatccgtgcttcata 11369
>gb|AC101221.11| Mus musculus chromosome 13, clone RP23-96E4, complete sequence Length = 258193 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 232 attgttctcttctcccaattccttcaat 259 |||||||||||| ||||||| ||||||| Sbjct: 102899 attgttctcttcacccaatttcttcaat 102872
>emb|BX294446.6| Mouse DNA sequence from clone RP23-459F16 on chromosome 2, complete sequence Length = 73907 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ctctccctacccctcttcct 59 |||||||||||||||||||| Sbjct: 21968 ctctccctacccctcttcct 21987
>emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g11, COMPLETE SEQUENCE Length = 126690 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 566 attttgaagtatccatgcttcata 589 |||||||||||||| ||||||||| Sbjct: 7579 attttgaagtatccgtgcttcata 7602
>emb|CR788294.5| Zebrafish DNA sequence from clone DKEY-68A6 in linkage group 16, complete sequence Length = 69768 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 450 aatcaaacttttcaaatttattaaaatg 477 |||||||||||||||| | ||||||||| Sbjct: 59884 aatcaaacttttcaaactaattaaaatg 59911
>emb|AL928871.5| Mouse DNA sequence from clone RP23-350F2 on chromosome 2, complete sequence Length = 133330 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 aacttttcaaatttattaaa 474 |||||||||||||||||||| Sbjct: 107969 aacttttcaaatttattaaa 107950
>emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chromosome 4, complete sequence Length = 128976 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cttgcatatatacctacaat 109 |||||||||||||||||||| Sbjct: 48078 cttgcatatatacctacaat 48097
>gb|AC161208.9| Mus musculus chromosome 5, clone RP23-71M14, complete sequence Length = 211079 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tcttcctaagagatgcctct 72 |||||||||||||||||||| Sbjct: 66929 tcttcctaagagatgcctct 66948 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,472,340 Number of Sequences: 3902068 Number of extensions: 6472340 Number of successful extensions: 129551 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129226 Number of HSP's gapped (non-prelim): 325 length of query: 689 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 666 effective length of database: 17,143,297,704 effective search space: 11417436270864 effective search space used: 11417436270864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)