ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdd20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 49 1e-05
2TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 39 0.015
3TPSY_SCHPO (Q9UUI7) Putative alpha,alpha-trehalose-phosphate syn... 37 0.072
4TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) ... 33 0.80
5VAV3_HUMAN (Q9UKW4) Protein vav-3 32 1.8
6VAV3_MOUSE (Q9R0C8) Protein vav-3 32 2.3
7S35B3_DROME (Q9VVD9) Solute carrier family 35 member B3 homolog 31 3.0

>TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP)
          Length = 817

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
 Frame = -1

Query: 677 SVSKGFVAEKILSMLTENKRQADFVLCIGDDRSDEDMFEGIADIMRRSIVDPQTSLYACT 498
           S++KG + ++ILS   E+   + F+ C GDDR+DEDMF     + + + ++ +TS +A T
Sbjct: 731 SINKGGIVKQILSSYPEDSLPS-FIFCAGDDRTDEDMFR---SLHKNTRINKETS-FAVT 785

Query: 497 VG--QKPSKAKYYLDDTNDVLNMLEALAD 417
           +G  +K S A + + D  +V+++L  LA+
Sbjct: 786 IGSDKKLSIADWCIADPANVIDILADLAN 814



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>TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP) (Trehalose synthase complex catalytic
           subunit TPS2)
          Length = 896

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
 Frame = -1

Query: 611 DFVLCIGDDRSDEDMFEGIADI---MRRSIVDPQT-----SLYACTVG--QKPSKAKYYL 462
           DFVLC+GDD +DEDMF  +  I    +    D +        Y  TVG   K + AK +L
Sbjct: 774 DFVLCLGDDFTDEDMFRQLNTIETCWKEKYPDQKNQWGNYGFYPVTVGSASKKTVAKAHL 833

Query: 461 DDTNDVLNMLEAL 423
            D   VL  L  L
Sbjct: 834 TDPQQVLETLGLL 846



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>TPSY_SCHPO (Q9UUI7) Putative alpha,alpha-trehalose-phosphate synthase|
            [UDP-forming] subunit 100 kDa subunit (EC 2.4.1.15)
            (Trehalose-6-phosphate synthase)
            (UDP-glucose-glucosephosphate glucosyltransferase)
          Length = 891

 Score = 36.6 bits (83), Expect = 0.072
 Identities = 22/85 (25%), Positives = 41/85 (48%)
 Frame = -1

Query: 677  SVSKGFVAEKILSMLTENKRQADFVLCIGDDRSDEDMFEGIADIMRRSIVDPQTSLYACT 498
            ++SK   A  I++ L +N  + D +L  G++R+DE +F              + S +  +
Sbjct: 813  TISKATAANYIMTHLIKNPEELDLILVAGNNRTDESVFAWAN--------KSKVSSFTVS 864

Query: 497  VGQKPSKAKYYLDDTNDVLNMLEAL 423
            +G   ++AK Y D      N+L +L
Sbjct: 865  MGVGNTEAKAYTDGIPSFFNVLNSL 889



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>TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) (Trehalose|
           6-phosphate phosphatase) (TPP)
          Length = 718

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -1

Query: 623 KRQADFVLCIGDDRSDEDMFEGIADIMRRSIVDPQTSLYACTVGQKPSKAKYYLDDTNDV 444
           K +  FVLC GDD +DEDMF    D+ +          Y   VG + + A Y + D  + 
Sbjct: 663 KIEEGFVLCAGDDVADEDMF----DVCKG---------YTIKVGDQSTSAAYRVKDPENF 709

Query: 443 LNMLEALAD 417
             +L  L +
Sbjct: 710 RMLLGRLLE 718



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>VAV3_HUMAN (Q9UKW4) Protein vav-3|
          Length = 847

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -1

Query: 581 SDEDMFEGIADIMRRSIVDPQTSLYACTVGQ 489
           +DED+++G+ D++  ++V+ +  LY C  G+
Sbjct: 136 NDEDIYKGLPDLIDETLVEDEEDLYDCVYGE 166



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>VAV3_MOUSE (Q9R0C8) Protein vav-3|
          Length = 847

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 581 SDEDMFEGIADIMRRSIVDPQTSLYACTVGQKPSKAKYYLDDTNDVLNMLEALADASEE 405
           +DED+++G+ D++  + V+ +  LY C  G+      Y      D++   EA    S+E
Sbjct: 136 NDEDIYKGLPDLIDETRVEDEEDLYDCVYGEDEGGEVY-----EDLMKAEEAQQPKSQE 189



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>S35B3_DROME (Q9VVD9) Solute carrier family 35 member B3 homolog|
          Length = 396

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
 Frame = -3

Query: 441 EHARGTCRCIRGGWFT---RRIGDTFSVGGGMMKSWMQEMSKSISQ*CIATSNLQSKLKP 271
           + A  TC CI   WFT    ++   F++ G  M S       +I        N+Q K   
Sbjct: 192 DFAAATCMCIGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIG-------NVQEKAMR 244

Query: 270 SSASWSAALVIYR*SDQCQ*PSVGLVLVYFIVLPSRNFGVIFTFCLD 130
              + S+ +V Y          +G V ++ I+L + NF   F FCL+
Sbjct: 245 EFKAPSSEVVFYS-------YGLGFVYLFVIMLVTGNFFSGFAFCLE 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,390,947
Number of Sequences: 219361
Number of extensions: 1685086
Number of successful extensions: 3782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3771
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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