ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdd19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ222774.1|HVJ222774 Hordeum vulgare mRNA for putative thiol... 549 e-153
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.019
5emb|X80876.1|OSCYSPRO O.sativa mRNA for cysteine protease 48 0.019
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
7dbj|AK071495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
8dbj|AB004648.1| Oryza sativa (japonica cultivar-group) RepA gene... 48 0.019
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.019
10ref|NM_183860.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
11gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Can... 42 1.2
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
13dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
14dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
15gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosom... 42 1.2
16ref|NM_188466.1| Oryza sativa (japonica cultivar-group), Ozsa816... 40 4.7
17ref|XM_507329.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.7
18ref|XM_483741.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
19ref|NM_184003.1| Oryza sativa (japonica cultivar-group), predic... 40 4.7
20ref|NM_183997.1| Oryza sativa (japonica cultivar-group), predic... 40 4.7
21gb|AC118640.8| Mus musculus chromosome 15, clone RP24-112A20, co... 40 4.7
22emb|AL035467.23|HS288M22 Human DNA sequence from clone RP1-288M2... 40 4.7
23gb|AC112163.7| Mus Musculus chromosome 13 BAC, clone MGS1-437011... 40 4.7
24emb|Z97022.1|HVZ97022 Hordeum vulgare gene encoding cysteine pro... 40 4.7
25gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 4.7
26gb|AC154350.3| Mus musculus BAC clone RP23-225B15 from chromosom... 40 4.7
27gb|AC021231.8| Homo sapiens chromosome , clone RP11-323I15, comp... 40 4.7
28dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
29dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
30dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
31dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
32dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
33dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
34dbj|AK105612.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
35dbj|AK099308.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
36dbj|AK072235.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
37gb|U32430.1|TAU32430 Triticum aestivum thiol protease mRNA, comp... 40 4.7
38gb|AC140844.3| Mus musculus BAC clone RP24-361P18 from 13, compl... 40 4.7
39gb|AC170086.2| Mus musculus BAC clone RP24-127E11 from chromosom... 40 4.7
40gb|M77350.1|MUSMHKA1A Mouse hair keratin A1 (MHKA1) gene, comple... 40 4.7
41emb|AL592545.10| Mouse DNA sequence from clone RP23-374H24 on ch... 40 4.7 
>emb|AJ222774.1|HVJ222774 Hordeum vulgare mRNA for putative thiol protease, clone L8
          Length = 382

 Score =  549 bits (277), Expect = e-153
 Identities = 299/309 (96%)
 Strand = Plus / Minus

                                                                       
Query: 44  tggggtacacaaatgaatagctcggtaccgtgcaattatttaatatntatatatnaaggt 103
           |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct: 382 tggggtacacaaatgaatagctaggtaccgtgcaattatttaatatttatatataaaggt 323

                                                                       
Query: 104 atgcacggtgtcncacagagatagatgatgatggaggtgccatcatatgatagggnaaac 163
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 322 atgcacggagtcacacagagatagatgatgatggaggtgccatcatatgatagggtaaac 263

                                                                       
Query: 164 cgggagcttgncaaggccgcacaagcccaagggcggngagtccctaaggagatagatgaa 223
           |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 262 cgggagcttggcaaggccgcacaagcccaagggcggcgagtccctaaggagatagatgaa 203

                                                                       
Query: 224 gcctttgtcaccccacttggcagtccacgagttcttaccgatccagtacttggtcccgtc 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcctttgtcaccccacttggcagtccacgagttcttaccgatccagtacttggtcccgtc 143

                                                                       
Query: 284 aggcttggtccngtacccnacgagggccatcgcatggttctgcgcagtcttgcacgcccc 343
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aggcttggtcccgtacccgacgagggccatcgcatggttctgcgcagtcttgcacgcccc 83

                    
Query: 344 tttgatgta 352
           |||||||||
Sbjct: 82  tttgatgta 74
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 248      ccacgagttcttaccgatccagtacttggt 277
                ||||||||||||| ||||||||||||||||
Sbjct: 22126327 ccacgagttcttaacgatccagtacttggt 22126356



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 248      ccacgagttcttaccgatccagta 271
                ||||||||||||| ||||||||||
Sbjct: 22136831 ccacgagttcttaacgatccagta 22136854
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>dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0042B15
          Length = 157981

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 248   ccacgagttcttaccgatccagtacttggt 277
             ||||||||||||| ||||||||||||||||
Sbjct: 47820 ccacgagttcttaacgatccagtacttggt 47849



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 248   ccacgagttcttaccgatccagta 271
             ||||||||||||| ||||||||||
Sbjct: 58324 ccacgagttcttaacgatccagta 58347
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>gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026D03 map near S2137, complete sequence
          Length = 115141

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 248   ccacgagttcttaccgatccagtacttggtcccgtc 283
             ||||||||||||  |||||||||||||||| |||||
Sbjct: 34059 ccacgagttcttgacgatccagtacttggtgccgtc 34024
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>emb|X80876.1|OSCYSPRO O.sativa mRNA for cysteine protease
          Length = 1440

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 248  ccacgagttcttaccgatccagtacttggtcccgtc 283
            ||||||||||||  |||||||||||||||| |||||
Sbjct: 1071 ccacgagttcttgacgatccagtacttggtgccgtc 1036
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                   
Query: 248     ccacgagttcttaccgatccagtacttggtcccgtc 283
               ||||||||||||  |||||||||||||||| |||||
Sbjct: 8298341 ccacgagttcttgacgatccagtacttggtgccgtc 8298376
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>dbj|AK071495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099K03, full
            insert sequence
          Length = 1511

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 248  ccacgagttcttaccgatccagtacttggtcccgtc 283
            ||||||||||||  |||||||||||||||| |||||
Sbjct: 1077 ccacgagttcttgacgatccagtacttggtgccgtc 1042
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>dbj|AB004648.1| Oryza sativa (japonica cultivar-group) RepA gene for cysteine
            endopeptidase, complete cds
          Length = 3836

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 248  ccacgagttcttaccgatccagtacttggtcccgtc 283
            ||||||||||||  |||||||||||||||| |||||
Sbjct: 2593 ccacgagttcttgacgatccagtacttggtgccgtc 2558
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                   
Query: 248     ccacgagttcttaccgatccagtacttggtcccgtc 283
               ||||||||||||  |||||||||||||||| |||||
Sbjct: 8369104 ccacgagttcttgacgatccagtacttggtgccgtc 8369139
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>ref|NM_183860.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 247  tccacgagttcttaccgatccagtacttg 275
            |||||||||||||  ||||||||||||||
Sbjct: 1000 tccacgagttcttggcgatccagtacttg 972
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>gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 154016

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 118    acagagatagatgatgatgga 138
              |||||||||||||||||||||
Sbjct: 110534 acagagatagatgatgatgga 110554
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 247      tccacgagttcttaccgatccagtacttg 275
                |||||||||||||  ||||||||||||||
Sbjct: 12735937 tccacgagttcttggcgatccagtacttg 12735909



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 247      tccacgagttcttaccgatccagtactt 274
                |||||||||||||  |||||||||||||
Sbjct: 13843215 tccacgagttcttggcgatccagtactt 13843188



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 247      tccacgagttcttaccgatccagtactt 274
                |||||||||||||  |||||||||||||
Sbjct: 13821084 tccacgagttcttggcgatccagtactt 13821111



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 248     ccacgagttcttaccgatccagtacttg 275
               ||||||||||||  ||||||||||||||
Sbjct: 6400961 ccacgagttcttggcgatccagtacttg 6400934
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>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489E06
          Length = 140229

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 247   tccacgagttcttaccgatccagtacttg 275
             |||||||||||||  ||||||||||||||
Sbjct: 16336 tccacgagttcttggcgatccagtacttg 16308
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>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0554D10
          Length = 158723

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 247    tccacgagttcttaccgatccagtacttg 275
              |||||||||||||  ||||||||||||||
Sbjct: 102966 tccacgagttcttggcgatccagtacttg 102938
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>gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosome 10, complete sequence
          Length = 200663

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 118    acagagatagatgatgatgga 138
              |||||||||||||||||||||
Sbjct: 136747 acagagatagatgatgatgga 136767
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>ref|NM_188466.1| Oryza sativa (japonica cultivar-group), Ozsa8161 predicted mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 248 ccacgagttcttaccgatccagtacttg 275
           ||||||||||||  ||||||||||||||
Sbjct: 996 ccacgagttcttggcgatccagtacttg 969
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>ref|XM_507329.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1150_A11.17 mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 248  ccacgagttcttaccgatccagtacttggtcccgtc 283
            |||||||||| |  |||||||||||||||| |||||
Sbjct: 1038 ccacgagttcctgacgatccagtacttggtgccgtc 1003
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>ref|XM_483741.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 248  ccacgagttcttaccgatccagtacttggtcccgtc 283
            |||||||||| |  |||||||||||||||| |||||
Sbjct: 1038 ccacgagttcctgacgatccagtacttggtgccgtc 1003
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>ref|NM_184003.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 247 tccacgagttcttaccgatccagtactt 274
           |||||||||||||  |||||||||||||
Sbjct: 982 tccacgagttcttggcgatccagtactt 955
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>ref|NM_183997.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 247 tccacgagttcttaccgatccagtactt 274
           |||||||||||||  |||||||||||||
Sbjct: 982 tccacgagttcttggcgatccagtactt 955
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>gb|AC118640.8| Mus musculus chromosome 15, clone RP24-112A20, complete sequence
          Length = 179510

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    tgatgatggaggtgccatca 148
              ||||||||||||||||||||
Sbjct: 132026 tgatgatggaggtgccatca 132007
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>emb|AL035467.23|HS288M22 Human DNA sequence from clone RP1-288M22 on chromosome 6q12-13 Contains a
              novel gene, the gene for a novel protein (FLJ13189) and a
              CpG Island, complete sequence
          Length = 155960

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     ggtacacaaatgaatagctc 66
              ||||||||||||||||||||
Sbjct: 118228 ggtacacaaatgaatagctc 118209
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>gb|AC112163.7| Mus Musculus chromosome 13 BAC, clone MGS1-437011 ES cell line,
             Complete Sequence, complete sequence
          Length = 159042

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   agagatagatgatgatggag 139
             ||||||||||||||||||||
Sbjct: 58309 agagatagatgatgatggag 58328
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>emb|Z97022.1|HVZ97022 Hordeum vulgare gene encoding cysteine proteinase
          Length = 5593

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 248  ccacgagttcttaccgatccagtacttggtcccgtc 283
            ||||||||||||   ||||||||||||||| |||||
Sbjct: 4810 ccacgagttcttcatgatccagtacttggtgccgtc 4775
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 179     gccgcacaagcccaagggcg 198
               ||||||||||||||||||||
Sbjct: 2172568 gccgcacaagcccaagggcg 2172587
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>gb|AC154350.3| Mus musculus BAC clone RP23-225B15 from chromosome 13, complete sequence
          Length = 213847

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    agagatagatgatgatggag 139
              ||||||||||||||||||||
Sbjct: 200837 agagatagatgatgatggag 200818
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>gb|AC021231.8| Homo sapiens chromosome , clone RP11-323I15, complete sequence
          Length = 185062

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     atagacatggggtacacaaa 56
              ||||||||||||||||||||
Sbjct: 143728 atagacatggggtacacaaa 143709
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 248      ccacgagttcttaccgatccagtacttggtcccgtc 283
                |||||||||| |  |||||||||||||||| |||||
Sbjct: 27868936 ccacgagttcctgacgatccagtacttggtgccgtc 27868901
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665D10
          Length = 134967

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 248   ccacgagttcttaccgatccagtacttg 275
             ||||||||||||  ||||||||||||||
Sbjct: 23356 ccacgagttcttggcgatccagtacttg 23329
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 248    ccacgagttcttaccgatccagtacttg 275
              ||||||||||||  ||||||||||||||
Sbjct: 172027 ccacgagttcttggcgatccagtacttg 172000
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>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1051E10
          Length = 207782

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 247  tccacgagttcttaccgatccagtactt 274
            |||||||||||||  |||||||||||||
Sbjct: 3517 tccacgagttcttggcgatccagtactt 3490
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>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0440D10
          Length = 144340

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 247   tccacgagttcttaccgatccagtactt 274
             |||||||||||||  |||||||||||||
Sbjct: 80618 tccacgagttcttggcgatccagtactt 80591



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 247   tccacgagttcttaccgatccagtactt 274
             |||||||||||||  |||||||||||||
Sbjct: 58487 tccacgagttcttggcgatccagtactt 58514
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 248   ccacgagttcttaccgatccagtacttggtcccgtc 283
             |||||||||| |  |||||||||||||||| |||||
Sbjct: 77014 ccacgagttcctgacgatccagtacttggtgccgtc 76979
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>dbj|AK105612.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B06, full
           insert sequence
          Length = 1351

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 248 ccacgagttcttaccgatccagtacttggtcccgtc 283
           |||||||||| |  |||||||||||||||| |||||
Sbjct: 952 ccacgagttcctgacgatccagtacttggtgccgtc 917
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>dbj|AK099308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144C09, full
            insert sequence
          Length = 1437

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 248  ccacgagttcttaccgatccagtacttggtcccgtc 283
            |||||||||| |  |||||||||||||||| |||||
Sbjct: 1038 ccacgagttcctgacgatccagtacttggtgccgtc 1003
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>dbj|AK072235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001J24, full
            insert sequence
          Length = 1437

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 248  ccacgagttcttaccgatccagtacttggtcccgtc 283
            |||||||||| |  |||||||||||||||| |||||
Sbjct: 1038 ccacgagttcctgacgatccagtacttggtgccgtc 1003
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>gb|U32430.1|TAU32430 Triticum aestivum thiol protease mRNA, complete cds
          Length = 1353

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 248  ccacgagttcttaccgatccagtacttg 275
            ||||||||||||  ||||||||||||||
Sbjct: 1038 ccacgagttcttggcgatccagtacttg 1011
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>gb|AC140844.3| Mus musculus BAC clone RP24-361P18 from 13, complete sequence
          Length = 132297

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   agagatagatgatgatggag 139
             ||||||||||||||||||||
Sbjct: 13172 agagatagatgatgatggag 13153
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>gb|AC170086.2| Mus musculus BAC clone RP24-127E11 from chromosome 13, complete
             sequence
          Length = 167543

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   agagatagatgatgatggag 139
             ||||||||||||||||||||
Sbjct: 69272 agagatagatgatgatggag 69253
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>gb|M77350.1|MUSMHKA1A Mouse hair keratin A1 (MHKA1) gene, complete cds
          Length = 8061

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  ggaggtgccatcatatgata 155
            ||||||||||||||||||||
Sbjct: 5090 ggaggtgccatcatatgata 5109
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>emb|AL592545.10| Mouse DNA sequence from clone RP23-374H24 on chromosome 11, complete
              sequence
          Length = 142565

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    ggaggtgccatcatatgata 155
              ||||||||||||||||||||
Sbjct: 122541 ggaggtgccatcatatgata 122522


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,164,785
Number of Sequences: 3902068
Number of extensions: 2164785
Number of successful extensions: 34210
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34110
Number of HSP's gapped (non-prelim): 100
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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