>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha)
           (SWI/SNF-related matrix associated actin dependent
           regulator of chromatin subfamily A member 2) (hBRM)
          Length = 1586

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 82  GFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLTWVGASGG 216
           G  PP  G G  + P+  H    +SP   PLGA   ++   + GG
Sbjct: 98  GMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGG 142

>PRGR_MOUSE (Q00175) Progesterone receptor (PR)|
          Length = 923

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 162 ARALGGASAPNVGRGERRAQASHASLDSDLXAFSHNPAHGSFAPLAFQPSAMTNCVNQR 338
           A   GG S+  V      A +S ++L+  L      P  GSFAPL  +P A  +C+  R
Sbjct: 432 AAVAGGPSSAAVSP----ASSSGSALECILYKAEAPPTQGSFAPLPCKPPAAASCLLPR 486

>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +3

Query: 36  PLPLQCPVAYLSRLQRIQPTARWEGSFEAADHGTSAGPT*PMARALGGASAPNVGRGERR 215
           P P Q    YL +   IQP  + E     A+  T+ GPT    +     S PN+  G +R
Sbjct: 435 PDPNQPSEYYLFQKPDIQPEEQ-EAVGSPAEAATAMGPTVLEGQVYTNTSPPNLNTGRQR 493

Query: 216 AQASHASLD 242
           +++   SL+
Sbjct: 494 SRSYDRSLE 502

>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)|
           (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase)
           (Phosphatidylinositol polyphosphate 5-phosphatase type
           IV)
          Length = 644

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 262 LNAXKSESKLACDACARRSPRPTLGALAPPRAR 164
           L   +  S LACD C+ RS + +   LAP R++
Sbjct: 234 LGPGRPRSPLACDDCSLRSAKSSFSLLAPIRSK 266

>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 550

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 159 MARALGGASAPNVGRGERRAQASHASLDSDLXAFSHNPAHGSFAP 293
           + R + G SA +  RG+  +  SH   D DL  F  + A  ++ P
Sbjct: 423 LTREIFGQSAFDAFRGQEISPGSHVQSDDDLDVFIRDHAESAYHP 467

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 38  SALTMPRRVFKSSAKDSAHRPLGRELRGGRSRHIGRT 148
           SA T+P     SSA     +P G  L GGR   +GRT
Sbjct: 506 SAATLPTAAVVSSAAAEGTQPSGLLLAGGRPALLGRT 542

>FHOD1_HUMAN (Q9Y613) FH1/FH2 domain-containing protein (Formin homolog|
           overexpressed in spleen) (FHOS) (Formin homology 2
           domain-containing protein 1)
          Length = 1163

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -1

Query: 205 PRPTLGALAPPRARAMG*VGPADVP*SAASKLPSQRAVG*ILCRRLKYATGH---CKGRG 35
           P P  G   PP    +    P  VP S+A  LP++R    +  R LK A GH       G
Sbjct: 590 PPPIKGPFPPPPPLPLAAPLPHSVPDSSA--LPTKRKTVKLFWRELKLAGGHGVSASRFG 647

Query: 34  PC 29
           PC
Sbjct: 648 PC 649

>MRCKG_HUMAN (Q6DT37) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)|
           (CDC42-binding protein kinase gamma) (Myotonic dystrophy
           kinase-related CDC42-binding kinase gamma) (Myotonic
           dystrophy protein kinase-like alpha) (MRCK gamma)
           (DMPK-like gamma
          Length = 1551

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 23  VAARPSALTMPRRVFKSSAKDSAHRPLGRELRGGRSRHIGRTDL 154
           V  +PS   +P   F+SS KDSA  P    + G  +RH G  DL
Sbjct: 804 VDTKPSNSLIPFLSFRSSEKDSAKDP---GISGEATRHGGEPDL 844

>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen|
           golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen)
          Length = 460

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 174 GGASAPNVGRGERRAQASHASLDSDLXAFSHNPAHGSFAPLAFQPSA 314
           GG      G+G    +A+ A+ D      S+N  HG F   A  P+A
Sbjct: 328 GGHHQAGPGQGGEEGEAAGAAGDGVAACGSYNEGHGKFLAAAQNPAA 374

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 49  NAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPL 174
           N PSR+    +  S PP      +  +  HRP R   W  PL
Sbjct: 863 NLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPL 904

>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 115

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 192 NVGRGERRAQASHASLDSDLXAFSHN 269
           ++G+G+  AQ +HASLD+ L  + +N
Sbjct: 12  DIGKGKLCAQVAHASLDAALKVYRNN 37

>TRMD_RHIME (Q92L41) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 240

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 344 EEPLIHTIGHRAWLKSQWREATVCRIMTERL*VRIQASMRRLRPPLAP 201
           E P + T G+ A + +QWREAT  R+  ER    ++ +    R P  P
Sbjct: 191 EIPAVLTSGNHAAV-AQWREATARRLTAERRPDLLERARHPKRDPPQP 237

>XYLD_RHILO (Q98D10) Putative D-xylulose reductase (EC 1.1.1.9) (Xylitol|
           dehydrogenase) (XDH)
          Length = 348

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 234 SLDSDLXAFSHNPAHGSFAPLAFQPSAMT 320
           ++D D+  ++  P HG  AP A  P+A T
Sbjct: 105 NVDPDVSFWATPPVHGVLAPYAVHPAAFT 133

>CI068_RAT (Q6AYJ3) Protein C9orf68 homolog|
          Length = 398

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 70  VVCKGFSPPPVGKGASRRPITAHRPD 147
           +V +  SPPP+  G  R+P+  H+ D
Sbjct: 287 IVLRSQSPPPLNSGHFRKPLLNHQGD 312

>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)|
           (Zinc finger protein Cezanne 2) (OTU domain-containing
           protein 7)
          Length = 926

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = +3

Query: 87  QPTARWEGSFEAADHGTSAGPT*PMARALGGASAPNVGRGERRA 218
           QPT       E    GT A      ARA GGA++P  G G RRA
Sbjct: 718 QPTQLVLKLKERPSPGTGASAR--AARAAGGAASPGPGGGARRA 759

>SNX18_MOUSE (Q91ZR2) Sorting nexin-18 (Sorting nexin-associated Golgi protein|
           1)
          Length = 614

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 3   GAGSSG-SWQQGPLPLQCPV 59
           GAGS G  WQ+ P P QC +
Sbjct: 251 GAGSYGPEWQENPYPFQCTI 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,294,196
Number of Sequences: 219361
Number of extensions: 1077297
Number of successful extensions: 3634
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)