>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 550

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 122 MARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAP 256
           + R + G SA +  RG+  +  SH   D DL+ F  + A  ++ P
Sbjct: 423 LTREIFGQSAFDAFRGQEISPGSHVQSDDDLDVFIRDHAESAYHP 467

>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha)
           (SWI/SNF-related matrix associated actin dependent
           regulator of chromatin subfamily A member 2) (hBRM)
          Length = 1586

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 45  GFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLTWVGASGG 179
           G  PP  G G  + P+  H    +SP   PLGA   ++   + GG
Sbjct: 98  GMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGG 142

>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)|
           (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase)
           (Phosphatidylinositol polyphosphate 5-phosphatase type
           IV)
          Length = 644

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 225 LNASKSESKLACDACARRSPRPTLGALAPPRAR 127
           L   +  S LACD C+ RS + +   LAP R++
Sbjct: 234 LGPGRPRSPLACDDCSLRSAKSSFSLLAPIRSK 266

>PRGR_MOUSE (Q00175) Progesterone receptor (PR)|
          Length = 923

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 125 ARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNCVNQR 301
           A   GG S+  V      A +S ++L+  L      P  GSFAPL  +P A  +C+  R
Sbjct: 432 AAVAGGPSSAAVSP----ASSSGSALECILYKAEAPPTQGSFAPLPCKPPAAASCLLPR 486

>IL17C_HUMAN (Q9P0M4) Interleukin-17C precursor (IL-17C) (Cytokine CX2)|
          Length = 197

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +2

Query: 134 LGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 289
           LG A    + RG +  QA   +L S LEA SH   H        +PSA T C
Sbjct: 44  LGQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHE-------RPSATTQC 88

>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 115

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 155 NVGRGERRAQASHASLDSDLEAFSHN 232
           ++G+G+  AQ +HASLD+ L+ + +N
Sbjct: 12  DIGKGKLCAQVAHASLDAALKVYRNN 37

>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)|
           (Sterol regulatory element-binding transcription factor
           1) (Adipocyte determination- and
           differentiation-dependent factor 1) (ADD1) (Fragment)
          Length = 1024

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 28/71 (39%), Positives = 35/71 (49%)
 Frame = +2

Query: 71  GSFEAADHGTSAGPT*PMARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSF 250
           G F+A   G   G T P +    GAS+P        + +S ASL S LEAF   P   + 
Sbjct: 21  GLFDAPYAGGETGDTGPSSP---GASSPE-------SFSSPASLGSSLEAFLGGP-KVTP 69

Query: 251 APLAFQPSAMT 283
           APL+  PSA T
Sbjct: 70  APLSPPPSAPT 80

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 1   SALTMPRRVFKSSAKDSAHRPLGRELRGGRSRHIGRT 111
           SA T+P     SSA     +P G  L GGR   +GRT
Sbjct: 506 SAATLPTAAVVSSAAAEGTQPSGLLLAGGRPALLGRT 542

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 12  NAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPL 137
           N PSR+    +  S PP      +  +  HRP R   W  PL
Sbjct: 863 NLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPL 904

>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 5   PLQCPVAYLSRLQRIQPTARWEGSFEAADHGTSAGPT*PMARALGGASAPNVGRGERRAQ 184
           P Q    YL +   IQP  + E     A+  T+ GPT    +     S PN+  G +R++
Sbjct: 437 PNQPSEYYLFQKPDIQPEEQ-EAVGSPAEAATAMGPTVLEGQVYTNTSPPNLNTGRQRSR 495

Query: 185 ASHASLD 205
           +   SL+
Sbjct: 496 SYDRSLE 502

>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen|
           golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen)
          Length = 460

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 137 GGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSA 277
           GG      G+G    +A+ A+ D      S+N  HG F   A  P+A
Sbjct: 328 GGHHQAGPGQGGEEGEAAGAAGDGVAACGSYNEGHGKFLAAAQNPAA 374

>FHOD1_HUMAN (Q9Y613) FH1/FH2 domain-containing protein (Formin homolog|
           overexpressed in spleen) (FHOS) (Formin homology 2
           domain-containing protein 1)
          Length = 1163

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -1

Query: 168 PRPTLGALAPPRARAMG*VGPADVP*SAASKLPSQRAVG*ILCRRLKYATGH 13
           P P  G   PP    +    P  VP S+A  LP++R    +  R LK A GH
Sbjct: 590 PPPIKGPFPPPPPLPLAAPLPHSVPDSSA--LPTKRKTVKLFWRELKLAGGH 639

>PRGR_RAT (Q63449) Progesterone receptor (PR)|
          Length = 923

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 26/97 (26%)
 Frame = +2

Query: 89  DHGTSAGPT*PMARALGGASA---------------PNVGRGERRAQASHASLD------ 205
           + GT A    P    L GASA               P    GE    A  A++       
Sbjct: 390 EEGTEAASRSPRPYLLAGASAATFPDFPLPPRPPRAPPSRPGEAAVAAPSAAVSPVSSSG 449

Query: 206 SDLEAFSHN-----PAHGSFAPLAFQPSAMTNCVNQR 301
           S LE   +      P  GSFAPL  +P A ++C+  R
Sbjct: 450 SALECILYKAEGAPPTQGSFAPLPCKPPAASSCLLPR 486

>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)|
           (Zinc finger protein Cezanne 2) (OTU domain-containing
           protein 7)
          Length = 926

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = +2

Query: 50  QPTARWEGSFEAADHGTSAGPT*PMARALGGASAPNVGRGERRA 181
           QPT       E    GT A      ARA GGA++P  G G RRA
Sbjct: 718 QPTQLVLKLKERPSPGTGASAR--AARAAGGAASPGPGGGARRA 759

>XYLD_RHILO (Q98D10) Putative D-xylulose reductase (EC 1.1.1.9) (Xylitol|
           dehydrogenase) (XDH)
          Length = 348

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 197 SLDSDLEAFSHNPAHGSFAPLAFQPSAMT 283
           ++D D+  ++  P HG  AP A  P+A T
Sbjct: 105 NVDPDVSFWATPPVHGVLAPYAVHPAAFT 133

>TRMD_RHIME (Q92L41) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 240

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 307 EEPLIHTIGHRAWLKSQWREATVCRIMTERL*VRIQASMRRLRPPLAP 164
           E P + T G+ A + +QWREAT  R+  ER    ++ +    R P  P
Sbjct: 191 EIPAVLTSGNHAAV-AQWREATARRLTAERRPDLLERARHPKRDPPQP 237

>CI068_RAT (Q6AYJ3) Protein C9orf68 homolog|
          Length = 398

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 33  VVCKGFSPPPVGKGASRRPITAHRPD 110
           +V +  SPPP+  G  R+P+  H+ D
Sbjct: 287 IVLRSQSPPPLNSGHFRKPLLNHQGD 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,887,301
Number of Sequences: 219361
Number of extensions: 899312
Number of successful extensions: 3163
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3156
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)