ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdc09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLPX1_WOLSU (Q7MAS4) ATP-dependent Clp protease ATP-binding subu... 31 3.9
2DNAJ_RHILE (O33529) Chaperone protein dnaJ (Fragment) 30 6.6

>CLPX1_WOLSU (Q7MAS4) ATP-dependent Clp protease ATP-binding subunit clpX 1|
          Length = 417

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 89  AQISISPARPRAITEMELNTKTGYK*LRTPHAHINSDLMHLLP 217
           A++S  P    AI E+ +  KTG + LR     +  DLM+ LP
Sbjct: 341 AELSFEPEALEAIAELAIKRKTGARGLRAIIEEVTLDLMYDLP 383



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>DNAJ_RHILE (O33529) Chaperone protein dnaJ (Fragment)|
          Length = 234

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/64 (28%), Positives = 23/64 (35%)
 Frame = -1

Query: 430 LTCPSQGKKGSKPA*ERHSCKTCCSPPYSETNNSEASRCYRCPGADSERLVPPDQVPKCD 251
           +TC      G+KP  +  +C TC             S    CP       + PD  PKC 
Sbjct: 147 ITCDVCTGSGAKPGTQPKNCGTCQGTGRVRAAQGFFSIERTCPTCHGRGQIIPDPCPKCH 206

Query: 250 IHGR 239
             GR
Sbjct: 207 GQGR 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,467,727
Number of Sequences: 219361
Number of extensions: 2275729
Number of successful extensions: 5412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5409
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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