ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdc09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome... 96 2e-16
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
3dbj|AK109438.2| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
4dbj|AK061766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
5gb|AY105732.1| Zea mays PCO085152 mRNA sequence 64 6e-07
6dbj|AK066149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.15
7gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome... 42 2.3
8ref|XM_473837.1| Oryza sativa (japonica cultivar-group), predic... 42 2.3
9gb|AC140843.2| Mus musculus BAC clone RP24-443L17 from chromosom... 42 2.3
10gb|DQ001084.1| Equus caballus isolate CTNNA2 genomic sequence 42 2.3
11emb|Z70265.1|CEC05A9 Caenorhabditis elegans Cosmid C05A9, comple... 42 2.3
12gb|AC124714.4| Mus musculus BAC clone RP24-128K11 from chromosom... 42 2.3
13emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 42 2.3
14emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chro... 42 2.3
15ref|NM_077409.2| Caenorhabditis elegans C05A9.1 (p-glycoprotein)... 42 2.3
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
17gb|AC154651.2| Mus musculus BAC clone RP24-261K2 from chromosome... 42 2.3
18dbj|AK103652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
19emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 2.3
20gb|DQ138648.1| Drosophila yakuba strain T33 CG7960 gene, partial... 42 2.3
21gb|DQ138647.1| Drosophila yakuba strain Tai18 CG7960 gene, parti... 42 2.3
22gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome ... 42 2.3
23gb|AY303511.1| Wedelia simsioides external transcribed spacer, p... 40 9.2
24gb|AC132260.3| Mus musculus BAC clone RP24-370C1 from chromosome... 40 9.2
25gb|AC122864.3| Mus musculus BAC clone RP23-142M19 from 6, comple... 40 9.2
26gb|CP000001.1| Bacillus cereus E33L, complete genome 40 9.2
27emb|Z75092.1|SCYOR184W S.cerevisiae chromosome XV reading frame ... 40 9.2
28gb|AC093026.3| Homo sapiens 12 BAC RP11-307E8 (Roswell Park Canc... 40 9.2
29gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 40 9.2
30gb|AC008383.8|AC008383 Homo sapiens chromosome 5 clone CTC-222O2... 40 9.2
31gb|AC154502.2| Mus musculus BAC clone RP24-87I20 from chromosome... 40 9.2
32gb|DQ332381.1| Synthetic construct Saccharomyces cerevisiae clon... 40 9.2
33emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 ... 40 9.2
34emb|AL935116.6| Mouse DNA sequence from clone RP23-59I2 on chrom... 40 9.2
35gb|U19714.1|SCU19714 Saccharomyces cerevisiae 3-phosphoserine am... 40 9.2
36emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chro... 40 9.2
37gb|L20917.1|YSCSERC Saccharomyces cerevisiae 3-phosphoserine ami... 40 9.2 
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06,
              complete sequence
          Length = 139139

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                          
Query: 595    gacctatgcccaccacctcccagaagcacctgcaaatgggcttcacgtagatcccggctc 654
              |||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 113098 gacctatgtcccccacctcccagaagcacctgcaaatgggcttcacgtagatctcgactc 113157

                  
Query: 655    agca 658
              ||||
Sbjct: 113158 agca 113161



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                          
Query: 501    ttttgatgtttcctcagcatctaatgttgggaagctaaggccaaatgatgacagaagggg 560
              ||||||||||||||| |  ||| ||||||| |||||||||||||| ||||||||||| ||
Sbjct: 113001 ttttgatgtttcctctgtgtctgatgttggaaagctaaggccaaacgatgacagaagagg 113060

                               
Query: 561    atcagctgaaatatttg 577
               ||||||||||||||||
Sbjct: 113061 gtcagctgaaatatttg 113077



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 400    tccctttcttcccttgtgagggacaagtcaatact 434
              |||||||||||||||||||||||  ||||||||||
Sbjct: 112423 tccctttcttcccttgtgagggatgagtcaatact 112457



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 401    ccctttcttcccttgtgagggacaagtcaat 431
              |||||||||| |||||||||||| |||||||
Sbjct: 102486 ccctttcttcacttgtgagggacgagtcaat 102516



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 357    gagcagcaggtcttgcacgaatgccgctctcacgctggcttgct 400
              |||||||||||||||||| ||||  ||||| || || |||||||
Sbjct: 112368 gagcagcaggtcttgcacaaatgttgctctgacactcgcttgct 112411
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                            
Query: 595      gacctatgcccaccacctcccagaagcacctgcaaatgggcttcacgtagatcccggctc 654
                |||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 27748540 gacctatgtcccccacctcccagaagcacctgcaaatgggcttcacgtagatctcgactc 27748599

                    
Query: 655      agca 658
                ||||
Sbjct: 27748600 agca 27748603



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                            
Query: 501      ttttgatgtttcctcagcatctaatgttgggaagctaaggccaaatgatgacagaagggg 560
                ||||||||||||||| |  ||| ||||||| |||||||||||||| ||||||||||| ||
Sbjct: 27748443 ttttgatgtttcctctgtgtctgatgttggaaagctaaggccaaacgatgacagaagagg 27748502

                                 
Query: 561      atcagctgaaatatttg 577
                 ||||||||||||||||
Sbjct: 27748503 gtcagctgaaatatttg 27748519



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 400      tccctttcttcccttgtgagggacaagtcaatact 434
                |||||||||||||||||||||||  ||||||||||
Sbjct: 27747865 tccctttcttcccttgtgagggatgagtcaatact 27747899



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 401      ccctttcttcccttgtgagggacaagtcaat 431
                |||||||||| |||||||||||| |||||||
Sbjct: 27737928 ccctttcttcacttgtgagggacgagtcaat 27737958



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 357      gagcagcaggtcttgcacgaatgccgctctcacgctggcttgct 400
                |||||||||||||||||| ||||  ||||| || || |||||||
Sbjct: 27747810 gagcagcaggtcttgcacaaatgttgctctgacactcgcttgct 27747853
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>dbj|AK109438.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F07, full
           insert sequence
          Length = 1324

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 60/64 (93%)
 Strand = Plus / Minus

                                                                       
Query: 595 gacctatgcccaccacctcccagaagcacctgcaaatgggcttcacgtagatcccggctc 654
           |||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 616 gacctatgtcccccacctcccagaagcacctgcaaatgggcttcacgtagatctcgactc 557

               
Query: 655 agca 658
           ||||
Sbjct: 556 agca 553



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 501 ttttgatgtttcctcagcatctaatgttgggaagctaaggccaaatgatgacagaagggg 560
           ||||||||||||||| |  ||| ||||||| |||||||||||||| ||||||||||| ||
Sbjct: 713 ttttgatgtttcctctgtgtctgatgttggaaagctaaggccaaacgatgacagaagagg 654

                            
Query: 561 atcagctgaaatatttg 577
            ||||||||||||||||
Sbjct: 653 gtcagctgaaatatttg 637



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 400 tccctttcttcccttgtgagggacaagtcaatacttgaccgccacggccgagcagctgcc 459
           |||||||||||||||||||||||  |||||||||||||   ||| ||| |||||| || |
Sbjct: 814 tccctttcttcccttgtgagggatgagtcaatacttgaatcccatggctgagcaggtgtc 755

                  
Query: 460 tctttta 466
           |||||||
Sbjct: 754 tctttta 748



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 357 gagcagcaggtcttgcacgaatgccgctctcacgctggcttgct 400
           |||||||||||||||||| ||||  ||||| || || |||||||
Sbjct: 869 gagcagcaggtcttgcacaaatgttgctctgacactcgcttgct 826
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>dbj|AK061766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B10, full
           insert sequence
          Length = 1387

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 60/64 (93%)
 Strand = Plus / Minus

                                                                       
Query: 595 gacctatgcccaccacctcccagaagcacctgcaaatgggcttcacgtagatcccggctc 654
           |||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 636 gacctatgtcccccacctcccagaagcacctgcaaatgggcttcacgtagatctcgactc 577

               
Query: 655 agca 658
           ||||
Sbjct: 576 agca 573



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 501 ttttgatgtttcctcagcatctaatgttgggaagctaaggccaaatgatgacagaagggg 560
           ||||||||||||||| |  ||| ||||||| |||||||||||||| ||||||||||| ||
Sbjct: 733 ttttgatgtttcctctgtgtctgatgttggaaagctaaggccaaacgatgacagaagagg 674

                            
Query: 561 atcagctgaaatatttg 577
            ||||||||||||||||
Sbjct: 673 gtcagctgaaatatttg 657



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 400 tccctttcttcccttgtgagggacaagtcaatacttgaccgccacggccgagcagctgcc 459
           |||||||||||||||||||||||  |||||||||||||   ||| ||| |||||| || |
Sbjct: 834 tccctttcttcccttgtgagggatgagtcaatacttgaatcccatggctgagcaggtgtc 775

                  
Query: 460 tctttta 466
           |||||||
Sbjct: 774 tctttta 768



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 357 gagcagcaggtcttgcacgaatgccgctctcacgctggcttgct 400
           |||||||||||||||||| ||||  ||||| || || |||||||
Sbjct: 889 gagcagcaggtcttgcacaaatgttgctctgacactcgcttgct 846
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>gb|AY105732.1| Zea mays PCO085152 mRNA sequence
          Length = 1364

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 610 cctcccagaagcacctgcaaatgggcttcacgtagatcccggctcagcagagagag 665
           ||||| || ||||||||||| |||||||| |||||||| |||||||||| ||||||
Sbjct: 828 cctccgaggagcacctgcaagtgggcttcccgtagatctcggctcagcaaagagag 773



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 345  gaatagggtggagagcagcaggtcttgcacgaatgccgctctcacgctggcttgct 400
            |||||| || |||||||||||||| |||||||| |  ||||| |||| ||||||||
Sbjct: 1114 gaatagagtagagagcagcaggtcctgcacgaacgtggctctgacgcgggcttgct 1059
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>dbj|AK066149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057B07, full
            insert sequence
          Length = 3858

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 401  ccctttcttcccttgtgagggacaagtcaat 431
            |||||||||| |||||||||||| |||||||
Sbjct: 3470 ccctttcttcacttgtgagggacgagtcaat 3440
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>gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome 12, complete sequence
          Length = 239046

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   ggacacctcatgcccacatca 191
             |||||||||||||||||||||
Sbjct: 87920 ggacacctcatgcccacatca 87900
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>ref|XM_473837.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1767

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 23  caacaaaaacaatgcttgtaa 43
           |||||||||||||||||||||
Sbjct: 406 caacaaaaacaatgcttgtaa 386
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>gb|AC140843.2| Mus musculus BAC clone RP24-443L17 from chromosome 14, complete
             sequence
          Length = 124918

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 506   atgtttcctcagcatctaatg 526
             |||||||||||||||||||||
Sbjct: 54681 atgtttcctcagcatctaatg 54661
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>gb|DQ001084.1| Equus caballus isolate CTNNA2 genomic sequence
          Length = 740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 376 aatgccgctctcacgctggct 396
           |||||||||||||||||||||
Sbjct: 616 aatgccgctctcacgctggct 636
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>emb|Z70265.1|CEC05A9 Caenorhabditis elegans Cosmid C05A9, complete sequence
          Length = 34309

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 460   tcttttagcactggtacatca 480
             |||||||||||||||||||||
Sbjct: 31417 tcttttagcactggtacatca 31437
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>gb|AC124714.4| Mus musculus BAC clone RP24-128K11 from chromosome 1, complete sequence
          Length = 143929

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 396    ttgctccctttcttcccttgt 416
              |||||||||||||||||||||
Sbjct: 118617 ttgctccctttcttcccttgt 118597
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     caacaaaaacaatgcttgtaa 43
              |||||||||||||||||||||
Sbjct: 156364 caacaaaaacaatgcttgtaa 156384
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>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the
             5' end of the gene for a novel protein (330000P08Rik)
             (Luc7a), the gene for a novel protein (5530600A18Rik), the
             Abcc3 gene for ATP-binding cassette sub-family C
             (CFTR/MRP) member 3, the Cacna1g gene for calcium channel
             voltage-dependent T type alpha 1G subunit, the 3' end of
             the Tisp78 gene for transcript increased in spermiogenesis
             78 and one CpG island, complete sequence
          Length = 161978

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 170   aggacacctcatgcccacatc 190
             |||||||||||||||||||||
Sbjct: 19387 aggacacctcatgcccacatc 19367
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>ref|NM_077409.2| Caenorhabditis elegans C05A9.1 (p-glycoprotein) mRNA, complete cds
          Length = 3907

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 460  tcttttagcactggtacatca 480
            |||||||||||||||||||||
Sbjct: 1274 tcttttagcactggtacatca 1254
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 23       caacaaaaacaatgcttgtaa 43
                |||||||||||||||||||||
Sbjct: 30888843 caacaaaaacaatgcttgtaa 30888863
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>gb|AC154651.2| Mus musculus BAC clone RP24-261K2 from chromosome 9, complete sequence
          Length = 173354

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 506   atgtttcctcagcatctaatg 526
             |||||||||||||||||||||
Sbjct: 23299 atgtttcctcagcatctaatg 23319
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>dbj|AK103652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135D24, full
           insert sequence
          Length = 1952

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 23  caacaaaaacaatgcttgtaa 43
           |||||||||||||||||||||
Sbjct: 588 caacaaaaacaatgcttgtaa 568
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    caacaaaaacaatgcttgtaa 43
             |||||||||||||||||||||
Sbjct: 65418 caacaaaaacaatgcttgtaa 65438
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>gb|DQ138648.1| Drosophila yakuba strain T33 CG7960 gene, partial cds
          Length = 492

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 648 ccggctcagcagagagagcga 668
           |||||||||||||||||||||
Sbjct: 36  ccggctcagcagagagagcga 56
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>gb|DQ138647.1| Drosophila yakuba strain Tai18 CG7960 gene, partial cds
          Length = 492

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 648 ccggctcagcagagagagcga 668
           |||||||||||||||||||||
Sbjct: 36  ccggctcagcagagagagcga 56
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>gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome 12, complete sequence
          Length = 185710

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 171    ggacacctcatgcccacatca 191
              |||||||||||||||||||||
Sbjct: 177285 ggacacctcatgcccacatca 177265
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>gb|AY303511.1| Wedelia simsioides external transcribed spacer, partial sequence
          Length = 371

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 172 gacacctcatgcccacatca 191
           ||||||||||||||||||||
Sbjct: 106 gacacctcatgcccacatca 125
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>gb|AC132260.3| Mus musculus BAC clone RP24-370C1 from chromosome 13, complete sequence
          Length = 160903

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 603   cccaccacctcccagaagca 622
             ||||||||||||||||||||
Sbjct: 54766 cccaccacctcccagaagca 54785
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>gb|AC122864.3| Mus musculus BAC clone RP23-142M19 from 6, complete sequence
          Length = 210148

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    tccttccttgctggggtgcc 229
              ||||||||||||||||||||
Sbjct: 114545 tccttccttgctggggtgcc 114564
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 571     atatttgccgcattattgtt 590
               ||||||||||||||||||||
Sbjct: 3508348 atatttgccgcattattgtt 3508329
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>emb|Z75092.1|SCYOR184W S.cerevisiae chromosome XV reading frame ORF YOR184w
          Length = 2182

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 448  cgagcagctgcctcttttag 467
            ||||||||||||||||||||
Sbjct: 1153 cgagcagctgcctcttttag 1134
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>gb|AC093026.3| Homo sapiens 12 BAC RP11-307E8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 114468

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 395    cttgctccctttcttcccttgtga 418
              |||||| |||||||||||||||||
Sbjct: 101638 cttgcttcctttcttcccttgtga 101661
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>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     actggtacaacaaaaacaat 35
              ||||||||||||||||||||
Sbjct: 116164 actggtacaacaaaaacaat 116145
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>gb|AC008383.8|AC008383 Homo sapiens chromosome 5 clone CTC-222O22, complete sequence
          Length = 209114

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   tgatgtttcctcagcatcta 523
             ||||||||||||||||||||
Sbjct: 99716 tgatgtttcctcagcatcta 99735
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>gb|AC154502.2| Mus musculus BAC clone RP24-87I20 from chromosome 13, complete sequence
          Length = 183319

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 650   ggctcagcagagagagcgactggc 673
             |||||||||||||||| |||||||
Sbjct: 86638 ggctcagcagagagagggactggc 86661
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>gb|DQ332381.1| Synthetic construct Saccharomyces cerevisiae clone FLH143684.01X SER1
            gene, complete sequence
          Length = 1188

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 448  cgagcagctgcctcttttag 467
            ||||||||||||||||||||
Sbjct: 1058 cgagcagctgcctcttttag 1039
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>emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 in linkage group 3,
             complete sequence
          Length = 159132

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    agcggtatggtacggtacag 73
             ||||||||||||||||||||
Sbjct: 51313 agcggtatggtacggtacag 51294
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>emb|AL935116.6| Mouse DNA sequence from clone RP23-59I2 on chromosome 2, complete
             sequence
          Length = 35203

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   ttgatgtttcctcagcatct 522
             ||||||||||||||||||||
Sbjct: 12704 ttgatgtttcctcagcatct 12723
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>gb|U19714.1|SCU19714 Saccharomyces cerevisiae 3-phosphoserine aminotransferase (SER1)
            gene, complete cds
          Length = 2325

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 448  cgagcagctgcctcttttag 467
            ||||||||||||||||||||
Sbjct: 1529 cgagcagctgcctcttttag 1510
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>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete
              sequence
          Length = 230614

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    catcactctgagcaggagta 495
              ||||||||||||||||||||
Sbjct: 129938 catcactctgagcaggagta 129919
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>gb|L20917.1|YSCSERC Saccharomyces cerevisiae 3-phosphoserine aminotransferase (SERC)
            gene, complete cds
          Length = 2252

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 448  cgagcagctgcctcttttag 467
            ||||||||||||||||||||
Sbjct: 1765 cgagcagctgcctcttttag 1746


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,289,417
Number of Sequences: 3902068
Number of extensions: 6289417
Number of successful extensions: 118487
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118317
Number of HSP's gapped (non-prelim): 170
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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